Section for Plant and Soil Sciences

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  1. Published

    Spatial oxygen distribution and nitrous oxide emissions from soil after manure application: a novel approach using planar optodes

    Zhu, K., Bruun, Sander, Larsen, M., Glud, R. N. & Jensen, Lars Stoumann, 2014, In: Journal of Environmental Quality. 43, 5, p. 1809-1812 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Spatio-temporal variations of shallow and deep well groundwater nitrate concentrations along the Indus River floodplain aquifer in Pakistan

    Khan, S. N., Yasmeen, T., Riaz, M., Arif, M. S., Rizwan, M., Ali, S., Tariq, Azeem & Jessen, Søren, Oct 2019, In: Environmental Pollution. 253, p. 384-392

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Spatiotemporal dynamics of phosphorus release, oxygen consumption and greenhouse gas emissions after localised soil amendment with organic fertilisers

    Christel, W., Zhu, K., Hoefer, C., Kreuzeder, A., Santner, J., Bruun, Sander, Magid, Jakob & Jensen, Lars Stoumann, 2016, In: Science of the Total Environment. 554-555, p. 119-129 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Stability and genetic control of morphological, biomass and biofuel traits under temperate maritime and continental conditions in sweet sorghum (Sorghum bicolour)

    Mocoeur, A. R. J., Liu, Z., Zhang, Y., Shen, X., Zhang, L., Rasmussen, S. K. & Jing, H., 2015, In: Theoretical and Applied Genetics. 128, 9, p. 1685-1701 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Stable Isotope Fractionation of Metals and Metalloids in Plants: A Review

    Wiggenhauser, M., Moore, R. E. T., Wang, P., Bienert, G. P., Laursen, Kristian Holst & Blotevogel, S., 2022, In: Frontiers in Plant Science. 13, 26 p., 840941.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    Stakeholder perceptions of manure treatment technologies in Denmark, Italy, the Netherlands and Spain

    Hou, Y., Velthof, G. L., Case, S., Oelofse, M., Grignani, C., Balsari, P., Zavattaro, L., Gioelli, F., Bernal, M. P., Fangueiro, D., Trindade, H., Jensen, Lars Stoumann & Oenema, O., 20 Jan 2018, In: Journal of Cleaner Production. 172, p. 1620-1630 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Straw export in continuous winter wheat and the ability of oil radish catch crops and early sowing of wheat to offset soil C and N losses: a simulation study

    Peltre, C., Nielsen, M. P., Christensen, B. T., Hansen, E. M., Thomsen, I. K. & Bruun, Sander, 2016, In: Agricultural Systems. 143, p. 195-202 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Straw yield and quality parameters of wheat for bio-refineries as affected by nitrogen application

    van Hecke, J. J. J., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Structural and chemical analysis of process residue from biochemical conversion of wheat straw (Triticum aestivum L.) to ethanol

    Hansen, M. A. T., Jørgensen, H., Laursen, Kristian Holst, Schjoerring, Jan K. & Felby, C., 2013, In: Biomass & Bioenergy. 56, p. 572-581 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Structural and temporal variation in the genetic diversity of a European collection of spring two-row barley cultivars and utility for association mapping of quantitative traits

    Tondelli, A., Xu, X., Moragues, M., Sharma, R., Schnaithmann, F., Ingvardsen, C. R., Manninen, O., Comadran, J., Russell, J., Waugh, R., Schulman, A. H., Pillen, K., Rasmussen, S. K., Kilian, B., Cattivelli, L., Thomas, W. T. B. & Flavell, A. J., 2013, In: The Plant Genome. 6, 2, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Structure and chromosomal localization of the gene encoding barley seed peroxidase BP 2A

    Theilade, B. & Rasmussen, S. K., 10 Sep 1992, In: Gene. 118, 2, p. 261-266 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Structure and enzymatic accessibility of leaf and stem from wheat straw before and after hydrothermal pretreatment

    Zhang, H., Thygesen, Lisbeth Garbrecht, Mortensen, Kell, Kádár, Z., Lindedam, J., Jørgensen, H. & Felby, C., 2014, In: Biotechnology for Biofuels. 7, 11 p., 74.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Studies of the variability of the genes encoding the insulin-like growth factor I receptor and its ligand in relation to type 2 diabetes mellitus

    Rasmussen, S. K., Lautier, C., Hansen, L., Echwald, S. M., Hansen, Torben, Ekstrøm, Claus Thorn, Urhammer, Søren Asger, Borch-Johnsen, K., Grigorescu, F., Smith, R. J. & Pedersen, Oluf Borbye, 1 Dec 2000, In: Journal of Clinical Endocrinology and Metabolism. 85, 4, p. 1606-1610 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Succession of the fungal endophytic microbiome of wheat is dependent on tissue-specific interactions between host genotype and environment

    Latz, Meike, Kerrn, Mads Herbert, Sørensen, Helle, Collinge, David B., Jensen, Birgit, Brown, J. K. M., Madsen, A. M. & Jørgensen, Hans Jørgen Lyngs, 2021, In: Science of the Total Environment. 759, 11 p., 143804.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field

    Nunes, I., Hansen, Veronika, Bak, Frederik, Bonnichsen, L., Su, J., Hao, X., Raymond, Nelly Sophie, Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Nybroe, O., 2022, In: FEMS Microbiology Ecology. 98, 3, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Summary report on mechanisms underpinning beneficial plant associations based on APSIM and DAISY

    Weih, M., Berghuijs, H. N. C., Ghaley, Bhim Bahadur, Hansen, Line Vinther, Vico, G. & Karley, A. J. (ed.), 2019, 44 p.

    Research output: Book/Report › Report › Research

  17. Published

    Suppression of XopQ–XopX-induced immune responses of rice by the type III effector XopG

    Deb, S., Gokulan, C. G., Nathawat, R., Patel, H. K. & Sonti, R. V., 2022, In: Molecular Plant Pathology. 23, 5, p. 634-648

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Suppression of arbuscular mycorrhizal fungal activity in a diverse collection of non-cultivated soils

    Cruz Paredes, C., Svenningsen, N. B., Nybroe, O., Kjøller, Rasmus, Frøslev, Tobias Guldberg & Jakobsen, Iver, Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-10 fiz020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

    Svenningsen, N. B., Watts-Williams, S. J., Joner, E. J., Battini, F., Efthymiou, A., Cruz Paredes, C., Nybroe, O. & Jakobsen, Iver, 2018, In: I S M E Journal. 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Surface properties correlate to the digestibility of hydrothermally pretreated lignocellulosic Poaceae biomass feedstocks

    Djajadi, Demi Tristan, Hansen, A. R., Jensen, A., Thygesen, Lisbeth Garbrecht, Pinelo, M., Meyer, A. S. & Jørgensen, H., 2017, In: Biotechnology for Biofuels. 10, 49, 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Survival and phosphate solubilisation activity of desiccated formulations of Penicillium bilaiae and Aspergillus niger influenced by water activity

    Raymond, Nelly Sophie, Müller-Stöver, Dorette Sophie, Jensen, Lars Stoumann & Hakansson, S., 2018, In: Journal of Microbiological Methods. 150, p. 39-46

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Survival of chicken ascarid eggs exposed to different soil types and fungi

    Thapa, S., Mejer, Helena, Thamsborg, Stig Milan, Lekfeldt, J. D. S., Wang, R., Jensen, Birgit, Magid, Jakob & Meyling, Nicolai Vitt, 2017, In: Agriculture, Ecosystems & Environment. 121, p. 143-151 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. E-pub ahead of print

    Sustainable growth of organic farming in the EU requires a rethink of nutrient supply

    Reimer, M., Oelofse, M., Müller-Stöver, Dorette Sophie, Möller, K., Bünemann, E. K., Bianchi, S., Vetemaa, A., Drexler, D., Trugly, B., Raskin, B., Blogg, H., Rasmussen, A., Verrastro, V. & Magid, Jakob, 2023, (E-pub ahead of print) In: Nutrient Cycling in Agroecosystems.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Synthesis of new MKC-442 analogues containing alkenyl chains or reactive functionalities at C-5

    Petersen, L., Hansen, Thomas Hesselhøj, Khalifa, N. M., Jørgensen, P. T., Pedersen, E. B. & Nielsen, C., 1 Jan 2002, In: Monatshefte fur Chemie. 133, 7, p. 1031-1043 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    TILLING in Brachypodium distachyon

    de Bang, L., Torp, A. M. & Rasmussen, S. K., 2017, Brachypodium genomics: methods and protocols. Sablok, G., Budak, H. & Ralph, P. J. (eds.). Springer, p. 173-186 14 p. (Methods in Molecular Biology, Vol. 1667).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  26. Published

    TILLING in plant disease control: applications and perspectives

    Desiderio, F., Torp, A. M., Vale, G. & Rasmussen, S. K., 2016, Plant pathogen resistance biotechnology. Collinge, D. B. (ed.). Wiley-Blackwell, p. 365-384 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  27. Published

    Temporal and Spatial Patterns of Zinc and Iron Accumulation during Barley (Hordeum vulgare L.) Grain Development

    Detterbeck, A., Pongrac, P., Persson, Daniel Pergament, Vogel-Mikus, K., Kelemen, M., Vavpetic, P., Pelicon, P., Arcon, I., Husted, Søren, Schjoerring, Jan K. & Clemens, S., 2020, In: Journal of Agricultural and Food Chemistry. 68, 44, p. 12229-12240 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Temporal effects of thinning on soil organic carbon and carbon cycling-related enzyme activities in oak-pine mixed forests

    Li, Y., Ajloon, F. H., Wang, X., Malghani, Saadatullah, Yu, S., Ma, X., Li, Y. & Wang, W., 2023, In: Forest Ecology and Management. 545, 9 p., 121293.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Test of efficacy of cellulases for biomass degradation

    Jørgensen, H., 2018, Cellulases: methods and protocols. Lübeck, M. (ed.). Springer, p. 283-297 (Methods in Molecular Biology, Vol. 1796).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Testing biowaste materials as peat replacement in organo-mineral fertilizers

    Sitzmann, T. J., Sica, P., Grignani, C. & Magid, Jakob, 2024, In: Frontiers in Sustainable Food Systems. 8, 11 p., 1330843.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Testing for plant available phosphorus in soils

    Mundus, S., Carstensen, A. & Husted, Søren, 2013, In: International Fertiliser Society. Proceedings. 738, p. 2-24 23 p.

    Research output: Contribution to journal › Conference article › Research › peer-review

  32. Published

    The Bacillus cereus Strain EC9 Primes the Plant Immune System for Superior Biocontrol of Fusarium oxysporum

    Madriz Ordenana, Kenneth, Pazarlar, S., Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Zhang, Y., Nielsen, K. L., Hansen, Lars Hestbjerg & Thordal-Christensen, Hans, 2022, In: Plants. 11, 5, 19 p., 687.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    The AMSH3 ESCRT-III-Associated Deubiquitinase Is Essential for Plant Immunity

    Schultz-Larsen, T., Lenk, Andrea, Kalinowska, K., Vestergaard, L. K., Pedersen, Carsten, Isono, E. & Thordal-Christensen, Hans, 2018, In: Cell Reports. 25, 9, p. 2329-2338.e5 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    The Arabidopsis bZIP19 and bZIP23 Activity Requires Zinc Deficiency – Insight on Regulation From Complementation Lines

    Lilay, Grmay Hailu, Castro, P. H., Campilho, A. & Assuncao, Ana, 2019, In: Frontiers in Plant Science. 9, p. 1-13 1955.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    The CLE53-SUNN genetic pathway negatively regulates arbuscular mycorrhiza root colonization in Medicago truncatula

    Karlo, M., Boschiero, C., Landerslev, K. G., Blanco, G. S., Wen, J., Mysore, K. S., Dai, X., Zhao, P. X. & de Bang, T. C., 2020, In: Journal of Experimental Botany. 71, 16, p. 4972-4984 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    The CUP-SHAPED COTYLEDON3 gene is required for boundary and shoot meristem formation in Arabidopsis

    Vroemen, C. W., Mordhorst, A. P., Albrecht, C., Kwaaitaal, M. A. C. J. & de Vries, S. C., Jul 2003, In: Plant Cell. 15, 7, p. 1563-77 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    The Effect of Gasification Biochar on Soil Carbon Sequestration, Soil Quality and Crop Growth

    Hansen, Veronika, 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    The Effects of Management Practices on Soil Organic Carbon Stocks in Oil Palm Plantation

    Niharika Rahman, Jakob Magid, Andreas de Neergaard, Ken Giller, Thilde Bech Bruun, N. R. J. M. A. D. N. K. G. T. B. B., 2014.

    Research output: Contribution to conference › Poster › Research

  39. Published

    The F-bZIP-regulated Zn deficiency response in land plants

    Assuncao, Ana, 2022, In: Planta. 256, 6, 108.

    Research output: Contribution to journal › Review › Research › peer-review

  40. Published

    The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids

    Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.

    Research output: Working paper › Preprint › Research

  41. Published

    The Intensity of Manganese Deficiency Strongly Affects Root Endodermal Suberization and Ion Homeostasis

    Chen, A., Husted, Søren, Salt, D. E., Schjoerring, Jan K. & Persson, Daniel Pergament, Oct 2019, In: Plant Physiology. 181, 2, p. 729-742

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    The Role of Soil Organic Matter for Maintaining Crop Yields: Evidence for a Renewed Conceptual Basis

    Schjønning, P., Jensen, J. L., Bruun, Sander, Jensen, Lars Stoumann, Christensen, B. T., Munkholm, L. J., Oelofse, M., Baby, S. & Knudsen, L., 2018, Advances in Agronomy. Academic Press, p. 35-79 (Advances in Agronomy, Vol. 150).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  43. Published

    The State of Play of Copper, Mineral Oil, External Nutrient Input, Anthelmintics, Antibiotics and Vitamin Usage and Available Reduction Strategies in Organic Farming across Europe

    Varga, K., Fehér, J., Trugly, B., Drexler, D., Leiber, F., Verrastro, V., Magid, Jakob, Chylinski, C., Athanasiadou, S., Thuerig, B., László, A., Ladányi, M., Moeskops, B., Herforth-Rahmé, J. & Tamm, L., 2022, In: Sustainability. 14, 6, 36 p., 3182.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The alleviating effect of elevated CO2 on heat stress susceptibility of two wheat (Triticum aestivum L.) cultivars

    Shanmugam, S., Kjær, K. H., Ottosen, C., Rosenqvist, Eva, Sharma, D. K. & Wollenweber, B., 2013, In: Journal of Agronomy and Crop Science. 199, 5, p. 340-350 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The barley powdery mildew candidate secreted effector protein CSEP0105 inhibits the chaperone activity of a small heat shock protein

    Ahmed, A. A., Pedersen, Carsten, Schultz-Larsen, T., Kwaaitaal, M. A. C. J., Jørgensen, Hans Jørgen Lyngs & Thordal-Christensen, Hans, 2015, In: Plant Physiology. 168, 1, p. 321-333 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The barley powdery mildew effector candidates CSEP0081 and CSEP0254 promote fungal infection success

    Ahmed, A. A., Pedersen, Carsten & Thordal-Christensen, Hans, 2016, In: P L o S One. 11, 6, 12 p., e0157586.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    The bifurcation of the cyanogenic glucoside and glucosinolate biosynthetic pathways

    Sørensen, Mette, Kannangara, R. M., Olsen, C. E., Blomstedt, C. K., Gleadow, R. M., Jørgensen, Kirsten, Bak, Søren, Motawie, Mohammed Saddik & Møller, Birger Lindberg, 2015, In: The Plant Journal. 84, 3, p. 558-573 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The biochemical properties of manganese in plants

    Schmidt, Sidsel Birkelund & Husted, Søren, 27 Sep 2019, In: Plants. 8, 10, p. 1-15 381.

    Research output: Contribution to journal › Review › Research › peer-review

  49. Published

    The complexity of wood ash fertilization disentangled: Effects on soil pH, nutrient status, plant growth and cadmium accumulation

    Johansen, Jesper Liengaard, Nielsen, M. L., Vestergård, M., Mortensen, Louise Hindborg, Cruz-Paredes, C., Rønn, Regin, Kjøller, Rasmus, Hovmand, Mads Frederik, Christensen, Søren & Ekelund, Flemming, 2021, In: Environmental and Experimental Botany. 185, 9 p., 104424.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    The different effects of applying fresh, composted or charred manure on soil N2O emissions

    Zhu, K., Christel, W., Bruun, Sander & Jensen, Lars Stoumann, 2014, In: Soil Biology & Biochemistry. 74, p. 61-69 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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