Section for Molecular Plant Biology

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  1. Published

    the role of GTR importers in rhizosecretion of glucosinolates in arabidopsis

    Xu, Deyang, Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2016.

    Research output: Contribution to conference › Conference abstract for conference › Research

  2. Published

    mGWAS Uncovers Gln-Glucosinolate Seed-Specific Interaction and its Role in Metabolic Homeostasis

    Slaten, M. L., Yobi, A., Bagaza, C., Chan, Y. O., Shrestha, V., Holden, S., Katz, E., Kanstrup, Christa, Lipka, A. E., Kliebenstein, D. J., Nour-Eldin, Hussam Hassan & Angelovici, R., 2020, In: Plant Physiology. 183, 2, p. 483-500 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    cDNA, amino acid and carbohydrate sequence of barley seed-specific peroxidase BP 1

    Johansson, A., Rasmussen, S. K., Harthill, J. E. & Welinder, K. G., 1 Apr 1992, In: Plant Molecular Biology. 18, 6, p. 1151-1161 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    cDNA library screening to identify interacting proteins of Golgi-localized type II membrane proteins

    Lund, C. H., Bromley, J. R., Lopez Marques, Rosa Laura & Sakuragi, Y., 2020, 15 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  5. Published

    cDNA cloning and characterization of two barley peroxidase transcripts induced differentially by the powdery mildew fungus Erysiphe graminis

    Thordal-Christensen, Hans, Brandt, J., Cho, B. H., Rasmussen, S. K., Gregersen, P. L., Smedegaard-Petersen, V. & Collinge, David B., 1 Jan 1992, In: Physiological and Molecular Plant Pathology. 40, 6, p. 395-409 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Winter fields antisense RNAs to kick off flowering

    Jin, Yu & Marquardt, Sebastian, 2021, In: Genes and Development. 38, 11-12, p. 785-786 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Vitamin D-5 in Arabidopsis thaliana

    Silvestro, D., Villette, C., Delecolle, J., Olsen, C. E., Motawie, Mohammed Saddik, Geoffroy, P., Miesch, M., Jensen, Poul Erik, Heintz, D. & Schaller, H., 2018, In: Scientific Reports. 8, p. 1-8 16348.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    VC1 catalyses a key step in the biosynthesis of vicine in faba bean

    Björnsdotter, E., Nadzieja, M., Chang, W., Escobar-Herrera, L., Mancinotti, Davide, Angra, D., Xia, Xinxing, Tacke, R., Khazaei, H., Crocoll, C., Vandenberg, A., Link, W., Stoddard, F. L., O'Sullivan, D. M., Stougaard, J., Schulman, A. H., Andersen, S. U. & Geu-Flores, Fernando, 2021, In: Nature Plants. 7, p. 923–931

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Using networks to identify and interpret natural variation

    Kliebenstein, D. J., 2020, In: Current Opinion in Plant Biology. 54, p. 122-126 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  10. Published

    Uptake Assays in Xenopus laevis Oocytes Using Liquid Chromatography-mass Spectrometry to Detect Transport Activity

    Jørgensen, M., Crocoll, C., Halkier, Barbara Ann & Nour-Eldin, Hussam Hassan, 2017, In: Bio-protocol. 7, 20, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Upon bolting the GTR1 and GTR2 transporters mediate transport of glucosinolates to the inflorescence rather than roots

    Andersen, T. G. & Halkier, Barbara Ann, 2014, In: Plant Signalling & Behavior. 9, 1, 2 p., e27740.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Unravelling the Transport Mechanism of NPF Transporters

    Wulff, N., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Unravelling protein-protein interaction networks linked to aliphatic and indole glucosinolate biosynthetic pathways in arabidopsis

    Kjeldgaard-Nintemann, Sebastian J, Vik, D., Svozil, J., Bak, M., Baerenfaller, K., Burow, Meike & Halkier, Barbara Ann, 2017, In: Frontiers in Plant Science. 8, 20 p., 2028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Unraveling incompatibility between wheat and the fungal pathogen Zymoseptoria tritici through apoplastic proteomics

    Yang, F., Li, W., Derbyshire, M., Larsen, M. R., Rudd, J. J. & Palmisano, G., 2015, In: B M C Genomics. 16, 12 p., 362.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Understanding the Biological Roles of Pectins in Plants through Physiological and Functional Characterizations of Plant and Fungal Mutants

    Stranne, M., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 233 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Understanding CrRLK1L Function: Cell Walls and Growth Control

    Nissen, Karen Stoltenberg, Willats, W. G. T. & Malinovsky, F. G., 2016, In: Trends in Plant Science. 21, 6, p. 516-527 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Ultrastructural modeling of small angle scattering from photosynthetic membranes

    Jakubauskas, D., Kowalewska, Ł., Sokolova, A. V., Garvey, C. J., Mortensen, Kell, Jensen, Poul Erik & Kirkensgaard, Jacob Judas Kain, 1 Dec 2019, In: Scientific Reports. 9, 13 p., 19405.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    USER-derived cloning methods and their primer design

    Salomonsen, B., Mortensen, U. H. & Halkier, Barbara Ann, 2014, DNA cloning and assembly methods. Humana Press, p. 59-72 13 p. (Methods in Molecular Biology, Vol. 1116).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  19. Published

    Trichoderma harzianum Peptaibols Stimulate Plant Plasma Membrane H+-ATPase Activity

    Bjørk, Peter Klemmed, Johansen, Nicolai Tidemand, Havshøi, N. W., Rasmussen, S. A., Ipsen, J. Ø., Isbrandt, T., Larsen, T. O. & Fuglsang, Anja Thoe, 2023, In: ACS Omega. 8, 38, p. 34928-34937 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Transport of defense compounds from source to sink: lessons learned from glucosinolates

    Jørgensen, M. E., Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2015, In: Trends in Plant Science. 20, 8, p. 508-514 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Transport engineering in microbial cell factories producing plant-specialized metabolites

    Belew, Zeinu Mussa, Poborsky, Michal, Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2022, In: Current Opinion in Green and Sustainable Chemistry. 33, 100576.

    Research output: Contribution to journal › Review › Research › peer-review

  22. Published

    Transport Engineering in Synthetic Biology: Identification and characterization of phlorizin transporters enables increased production in yeast

    Belew, Zeinu Mussa, 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Transforming yeast peroxisomes into microfactories for the efficient production of high-value isoprenoids

    hmq634, hmq634, Wajn, William Thomas, Liu, Y., Ignea, C. & Kampranis, Sotirios, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 50, p. 31789-31799 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Transfer of the cytochrome P450-dependent dhurrin pathway from Sorghum bicolor into Nicotiana tabacum chloroplasts for light-driven synthesis

    Gnanasekaran, Thiyagarajan, Karcher, D., Nielsen, A. J. Z., Martens, Helle Jakobe, Ruf, S., Kroop, X., Olsen, C. E., Motawie, Mohammed Saddik, Pribil, Mathias, Møller, Birger Lindberg, Bock, R. & Jensen, Poul Erik, 2016, In: Journal of Experimental Botany. 67, 8, p. 2495-2506 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Transcriptome and metabolite changes during hydrogen cyanamide-induced floral bud break in sweet cherry

    Ionescu, I. A., Lopez-Ortega, G., Burow, Meike, Bayo-Canha, A., Junge, A., Gericke, Oliver, Møller, Birger Lindberg & Sánchez Pérez, R., 2017, In: Frontiers in Plant Science. 8, 17 p., 1233.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Transcriptional reprogramming of wheat and the hemibiotrophic pathogen Septoria tritici during two phases of the compatible interaction

    Yang, F., Li, W. & Jørgensen, Hans Jørgen Lyngs, 2013, In: P L o S One. 8, 11, 15 p., e81606.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Transcriptional regulation of nitrogen-associated metabolism and growth

    Gaudinier, A., Rodriguez-Medina, J., Zhang, L., Olson, A., Liseron-Monfils, C., Bågman, A. M., Foret, J., Abbitt, S., Tang, M., Li, B., Runcie, D. E., Kliebenstein, D. J., Shen, B., Frank, M. J., Ware, D. & Brady, S. M., 8 Nov 2018, In: Nature. 563, 7730, p. 259-264

    Research output: Contribution to journal › Letter › Research › peer-review

  28. Published

    Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

    Kindgren, P. R., Ard, R., Ivanov, M. & Marquardt, Sebastian, 2018, In: Nature Communications. 9, p. 1-11 4561.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Transcriptional networks governing plant metabolism

    Gaudinier, A., Tang, M. & Kliebenstein, D. J., 2015, In: Current Plant Biology. 3-4, p. 56-64 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Transcription-driven chromatin repression of Intragenic transcription start sites

    Nielsen, M., Ard, R., Leng, Xueyuan, Ivanov, M., Kindgren, P. R., Pelechano, V. & Marquardt, Sebastian, 1 Feb 2019, In: PLOS Genetics. 15, 2, p. 1-33 e1007969.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Transcript profiling of a bitter variety of narrow-leafed lupin to discover alkaloid biosynthetic genes

    Yang, T., Nagy, I., Mancinotti, Davide, Otterbach, S. L., Andersen, T. B., Motawie, Mohammed Saddik, Asp, T. & Geu-Flores, Fernando, 2017, In: Journal of Experimental Botany. 68, 20, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis

    Thomas, Quentin, Ard, R., Liu, J., Li, B., Wang, J., Pelechano, V. & Marquardt, Sebastian, 2020, In: Nature Communications. 11, 1, p. 1-15

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, M., Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Tracking developmentally regulated post-synthetic processing of homogalacturonan and chitin using reciprocal oligosaccharide probes

    Mravec, Jozef, Kracun, S. K., Rydahl, M. G., Westereng, B., Miart, F., Clausen, M. H., Fangel, J. U., Daugaard, M., Van Cutsem, P., de Fine Licht, Henrik Hjarvard, Höfte, H., Malinovsky, F. G., Domozych, D. S. & Willats, W. G. T., 2014, In: Development. 141, p. 4841-4850 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Towards understanding the evolution and functional diversification of DNA-containing plant organelles: [version 1; referees: 3 approved]

    Leister, D. M., 2016, In: F1000Research. 5, 330.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Tomato fruit carotenoid biosynthesis is adjusted to actual ripening progression by a light-dependent mechanism

    Llorente, B., D'Andrea, L., Aguila Ruiz-Sola, M., Botterweg Paredes, E., Pulido, P., Andilla, J., Loza-Alvarez, P. & Rodriguez-Concepcion, M., 2016, In: Plant Journal. 85, 1, p. 107-119 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Tissue-specific gene-expression patterns of genes associated with thymol/carvacrol biosynthesis in thyme (Thymus vulgaris L.) and their differential changes upon treatment with abiotic elicitors

    Majdi, M., Malekzadeh-Mashhady, A., Maroufi, A. & Crocoll, C., 2017, In: Plant Physiology and Biochemistry. 115, p. 152-162 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Thermal unfolding and refolding of a lytic polysaccharide monooxygenase from Thermoascus aurantiacus

    Singh, R. K., Blossom, B. M., Russo, D. A., van Oort, B., Croce, R., Jensen, P. E., Felby, C. & Bjerrum, Morten Jannik, 2019, In: R S C Advances. 9, 9 p., 29734.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    The γ-hydroxybutyric acid (GHB) analogue NCS-382 is a substrate for both monocarboxylate transporters subtypes 1 and 4

    Thiesen, L., Belew, Zeinu Mussa, Griem-Krey, Nane, Pedersen, Stine Helene Falsig, Crocoll, C., Nour-Eldin, Hussam Hassan & Wellendorph, Petrine, 15 Feb 2020, In: European Journal of Pharmaceutical Sciences. 143, p. 1-9 105203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    The two Dps proteins, NpDps2 and NpDps5, are involved in light-induced oxidative stress tolerance in the N2-fixing cyanobacterium Nostoc punctiforme

    Moparthi, V. K., Li, X., Vavitsas, K., Dzhygyr, I., Sandh, G., Magnuson, A. & Stensjö, K., 2016, In: Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1857, 11, p. 1766-1776 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    The synergy between LPMOs and cellulases in enzymatic saccharification of cellulose is both enzyme- and substrate-dependent

    Tokin, Radina, Ipsen, J. Ø., Westh, P. & Johansen, Katja Salomon, 1 Oct 2020, In: Biotechnology Letters. 42, 10, p. 1975-1984 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    The role of the cell wall in plant immunity

    Malinovsky, F. G., Fangel, J. U. & Willats, W. G. T., 2014, In: Frontiers in Plant Science. 5, 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    The role of cysteine residues in redox regulation and protein stability of Arabidopsis thaliana starch synthase 1

    Skryhan, K., Cuesta-Seijo, J. A., Nielsen, M. M., Marri, L., Mellor, Silas Busck, Glaring, M. A., Jensen, Poul Erik, Palcic, M. M. & Blennow, Andreas, 2015, In: PLOS ONE. 10, 9, p. e0136997

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The quantitative basis of the Arabidopsis innate immune system to endemic pathogens depends on pathogen genetics

    Corwin, J. A., Copeland, D., Feusier, J., Subedy, A., Eshbaugh, R., Palmer, C., Maloof, J. & Kliebenstein, D. J., 2016, In: P L o S Genetics. 12, 2, 29 p., e1005789.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The primary sequence of cytochrome P-450TYR, the multifunctional N-hydroxylase catalyzing the conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime in the biosynthesis of the cyanogenic glucoside dhurrin in Sorghum bicolor (L.) Moench

    Koch, B. M., Sibbesen, O., Halkier, Barbara Ann, Svendsen, I. & Møller, Birger Lindberg, 20 Oct 1995, In: Archives of Biochemistry and Biophysics. 323, 1, p. 177-186 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The organization of the Fe-S acceptors of photosystem I

    Møller, Birger Lindberg, Halkier, Barbara Ann & Høj, P. B., 1986, Progress in Photosynthesis Research. Biggins, J. (ed.). 1 ed. Vol. II. p. 53-56 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  47. Published

    The non-coding RNA Ncr0700/PmgR1 is required for photomixotrophic growth and the regulation of glycogen accumulation in the cyanobacterium Synechocystis sp. PCC 6803

    de Porcellinis, A. J., Klähn, S., Rosgaard, L., Kirsch, R., Gutekunst, K., Georg, J., Hess, W. R. & Sakuragi, Y., 2016, In: Plant and Cell Physiology. 57, 10, p. 2091-2103 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The next step in microbial production of plant natural compounds - pathway optimization and stable integration

    Crocoll, C., Petersen, A. & Halkier, Barbara Ann, 2016, In: Planta Medica. 82, S 01, 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  49. Published

    The low molecular weight protein PsaI stabilizes the light-harvesting complex II docking site of photosystem I

    Plöchinger, M., Torabi, S., Rantala, M., Tikkanen, M., Suorsa, M., Jensen, Poul Erik, Aro, E. M. & Meurer, J., 2016, In: Plant Physiology. 172, 1, p. 450-463 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    The involvement of cytochrome P450 in the biosynthesis of cyanogenic glucosides

    Halkier, Barbara Ann, Scheller, H. V. & Møller, Birger Lindberg, 1989, Cytochrome P-450: Biochemistry and Biophysics. Schuster, I. (ed.). Taylor & Francis, p. 154-157 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

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