Section for Plant and Soil Sciences

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  1. Published

    Thermochemical treatment of biogas digestate solids to produce organic fertilisers: The effect of acidification and drying on N losses, soil N turnover and plant fertilizer value

    Pantelopoulos, A., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 118 p.

    Research output: Book/Report › Ph.D. thesis › Research

  2. Published

    Identification of a bio-signature for barley resistance against Pyrenophora teres infection based on physiological, molecular and sensor-based phenotyping

    Pandey, Chandana, Großkinsky, D. K., Westergaard, Jesper Cairo, Jørgensen, Hans Jørgen Lyngs, Svensgaard, J., Christensen, Svend, Schulz, Alexander & Roitsch, Thomas Georg, 2021, In: Plant Science. 313, 11 p., 111072.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Organic matter and water management strategies to reduce methane and nitrous oxide emissions from rice paddies in Vietnam

    Pandey, A., Mai, V. T., Duong, Q. V., Bui, T. P. L., Mai, T. L. A., Jensen, Lars Stoumann & de Neergaard, Andreas, 2014, In: Agriculture, Ecosystems and Environment. 196, p. 137-146 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Plant Actin Cytoskeleton: New Functions from Old Scaffold

    Paez-Garcia, A., Sparks, J. A., de Bang, L. & Blancaflor, E. B., 2018, Concepts in Cell Biology - History and Evolution. Sahi, V. P. & Baluška, F. (eds.). Springer, Vol. 23. p. 103-137 35 p. (Plant Cell Monographs, Vol. 23).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  5. Published

    Heat Stress Affects Pi-related Genes Expression and Inorganic Phosphate Deposition/Accumulation in Barley

    Pacak, A., Barciszewska-Pacak, M., Swida-Barteczka, A., Kruszka, K., Sega, P., Milanowska, K., Jakobsen, Iver, Jarmolowski, A. & Szweykowska-Kulinska, Z., 2016, In: Frontiers in Plant Science. 7, 19 p., 926.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Inhibitory serpins from wheat grain with reactive centers resembling glutamine-rich repeats of prolamin storage proteins. Cloning and characterization of five major molecular forms

    Oøstergaard, H., Rasmussen, S. K., Roberts, T. H. & Hejgaard, J., 27 Oct 2000, In: Journal of Biological Chemistry. 275, 43, p. 33272-33279 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Understanding the relationship between livelihood strategy and soil management: empirical insights from the central highlands of Ethiopia

    Oumer, A. M., Hjortsø, Carsten Nico Portefée & de Neergaard, Andreas, 2013, In: Food Security. 5, 2, p. 143-156 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Climate-smartness of smallholder crop-livestock systems: Insights from Central Kenya

    Ortiz-Gonzalo, Daniel, 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Multi-scale measurements show limited soil greenhouse GAS emissions in Kenyan smallholder coffee-dairy systems

    Ortiz-Gonzalo, Daniel, de Neergaard, Andreas, Vaast, P., Suárez-Villanueva, V., Oelofse, M. & Rosenstock, T. S., 2018, In: Science of the Total Environment. 626, p. 328-339 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Farm-scale greenhouse gas balances, hotspots and uncertainties in smallholder crop-livestock systems in Central Kenya

    Ortiz-Gonzalo, Daniel, Vaast, P., Oelofse, M., de Neergaard, Andreas, Albrecht, A. & Rosenstock, T. S., 2017, In: Applied Soil Ecology. 248, p. 58-70 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Changes in allelic frequency over time in European bread wheat (Triticum aestivum L.) varieties revealed using DArT and SSR markers

    Orabi, J., Jahoor, A. & Backes, G. M., 2014, In: Euphytica. 197, 3, p. 447-462 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Mother-plant-mediated pumping of zinc into the developing seed

    Olsen, L. I., Hansen, Thomas Hesselhøj, Laruelle, C., Østerberg, J. T., Hoffmann, R. D., Liesche, J., Krügel, U., Surblé, S., Cadarsi, S., Samson, V. A., Grolimund, D., Husted, Søren & Palmgren, Michael, 2016, In: Nature Plants. 2, 6 p., 16036.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Do soil organic carbon levels affect potential yields and nitrogen use efficiency? An analysis of winter wheat and spring barley field trials

    Oelofse, M., Markussen, Bo, Knudsen, L., Schelde, K., Olesen, J. E., Jensen, Lars Stoumann & Bruun, Sander, 4 Mar 2015, In: European Journal of Agronomy. 66, p. 62-73 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    The implications of phasing out conventional nutrient supply in organic agriculture: Denmark as a case

    Oelofse, M., Jensen, Lars Stoumann & Magid, Jakob, 2013, In: Organic Agriculture - Official journal of The International Society of Organic Agriculture Research. 3, 1, p. 41-55 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    The impact of black wattle encroachment of indigenous grasslands on soil carbon, Eastern Cape, South Africa

    Oelofse, M., Birch-Thomsen, Torben, Magid, Jakob, de Neergaard, Andreas, van Deventer, R., Bruun, Sander & Hill, T., 2016, In: Biological Invasions. 18, 2, p. 445-456 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Lignocellulosic residues for production of electricity, biogas or second generation biofuel: a case study of technical and sustainable potential of rice straw in Mali

    Nygaard, I., Dembele, F., Daou, I., Mariko, A., Kamissoko, F., Coulibaly, N., Borgstrøm, R. L. & Bruun, Thilde Bech, 2016, In: Renewable & Sustainable Energy Reviews. 61, p. 202-212 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Combining organic and inorganic nitrogen fertilisation reduces N2O emissions from cereal crops: a comparative analysis of China and Zimbabwe

    Nyamadzawo, G., Shi, Y., Chirinda, N., Olesen, J. E., Mapanda, F., Wuta, M., Wu, W., Meng, F., Oelofse, M., de Neergaard, Andreas & Smith, J., 2017, In: Mitigation and Adaptation Strategies for Global Change. 22, 2, p. 233-245 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Combining organic and inorganic nitrogen fertilisation reduces N2O emissions from cereal crops: a comparative analysis of China and Zimbabwe

    Nyamadzawo, G., Shi, Y., Chirinda, N., Olesen, J. E., Mapanda, F., Wuta, M., Wu, W., Meng, F., Oelofse, M., de Neergaard, Andreas & Smith, J., 2014, In: Mitigation and Adaptation Strategies for Global Change. 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Phytase-active lactic acid bacteria from sourdoughs: isolation and identification

    Nuobariene, L., Cizeikiene, D., Gradzeviciute, E., Hansen, Åse Solvej, Rasmussen, S. K., Juodeikiene, G. & Vogensen, Finn Kvist, 2015, In: Lebensmittel - Wissenschaft und Technologie. 63, 1, p. 766-772 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field

    Nunes, I., Hansen, Veronika, Bak, Frederik, Bonnichsen, L., Su, J., Hao, X., Raymond, Nelly Sophie, Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Nybroe, O., 2022, In: FEMS Microbiology Ecology. 98, 3, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Method for producing the sesquiterpene viridiflorol with a fungal enzyme

    Ntana, F., Collinge, David B., Hamberger, B. R., Bhat, W. W., Johnson, S. R., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2021, IPC No. A61K-000/00, C12N-009/88, Patent No. WO2021050841-A2, 11 Sep 2020

    Research output: Patent

  22. Published

    Fungal endophytes – the hidden inducers of volatile terpene biosynthesis in tomato plants

    Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Cernava, T., Berg, G. & Hamberger, B., 2017.

    Research output: Contribution to conference › Conference abstract for conference › Research

  23. Published

    Transcriptome analysis sheds light on the Serendipita indica-tomato interaction

    Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Hamberger, B., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 119 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  24. Published

    Regulation of Tomato Specialised Metabolism after Establishment of Symbiosis with the Endophytic Fungus Serendipita indica

    Ntana, F., Johnson, S. R., Hamberger, B., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2022, In: Microorganisms. 10, 17 p., 194.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol

    Ntana, F., Bhat, W. W., Johnson, S. R., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Jensen, Birgit & Hamberger, B., 2021, In: Biomolecules. 11, 6, 16 p., 898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Compound-specific Isotope Ratio Analysis for Authentication of High-value Plant Products

    Novák, V., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  27. Published

    Is it organic? Compound-specific stable isotope ratio analysis for authenticity testing of organically grown vegetables

    Novák, V., Adler, J., Husted, Søren & Laursen, Kristian Holst, 2018, p. 107-108. 2 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  28. Published

    Authenticity testing of organically grown vegetables by stable isotope ratio analysis of oxygen in plant-derived sulphate

    Novák, V., Adler, J., Husted, Søren, Fromberg, A. & Laursen, Kristian Holst, 1 Sep 2019, In: Food Chemistry. 291, p. 59-67

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Compound-specific isotope ratio analysis can reveal the fertilization history of plants

    Novák, V., Adler, J., Husted, Søren & Laursen, Kristian Holst, 2017, Proceedings Book: XVIII International Plant Nutrition Colloquium with Boron and Manganese Satellite Meetings. Carstensen, A., Laursen, K. H. & Schjoerring, J. K. (eds.). University of Copenhagen, p. 748-749 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  30. Published

    The oxygen isotopic signature of soil- and plant-derived sulphate is controlled by fertilizer type and water source

    Novak, V., Khatri, P. K. & Laursen, Kristian Holst, 2021, In: Plant, Cell and Environment. 44, 1, p. 203-215 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Impacts of empty fruit bunch applications on soil organic carbon in an industrial oil palm plantation

    Noirot, L. M., Müller-Stöver, Dorette Sophie, Wahyuningsih, R., Sørensen, Helle, Sudarno, Simamora, A., Pujianto, Suhardi & Caliman, J. P., 2022, In: Journal of Environmental Management. 317, 9 p., 115373.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Effectiveness of bio-effectors on maize, wheat and tomato performance and phosphorus acquisition from greenhouse to field scales in Europe and Israel: a meta-analysis

    Nkebiwe, P. M., Stevens Lekfeldt, J. D., Symanczik, S., Thonar, C., Mäder, P., Bar-Tal, A., Halpern, M., Biró, B., Bradáčová, K., Caniullan, P. C., Choudhary, K. K., Cozzolino, V., Di Stasio, E., Dobczinski, S., Geistlinger, J., Lüthi, A., Gómez-Muñoz, B., Kandeler, E., Kolberg, F., Kotroczó, Z. & 24 others, Kulhanek, M., Mercl, F., Tamir, G., Moradtalab, N., Piccolo, A., Maggio, A., Nassal, D., Szalai, M. Z., Juhos, K., Fora, C. G., Florea, A., Poşta, G., Lauer, K. F., Toth, B., Tlustoš, P., Mpanga, I. K., Weber, N., Weinmann, M., Yermiyahu, U., Magid, Jakob, Müller, T., Neumann, G., Ludewig, U. & de Neergaard, Andreas, 2024, In: Frontiers in Plant Science. 15, 16 p., 1333249.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Earthworms change the quantity and composition of dissolved organic carbon and reduce greenhouse gas emissions during composting

    Nigatu, A. N., Bruun, Sander, de Neergaard, Andreas & Kuyper, T. W., 2017, In: Waste Management. 62, p. 43-51 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Agricultural waste utilisation strategies and demand for urban waste compost: evidence from smallholder farmers in Ethiopia

    Nigatu, A. N., Kuyper, T. W. & de Neergaard, Andreas, 2015, In: Waste Management. 44, p. 82-93 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Vermicomposting as a technology for reducing nitrogen losses and greenhouse gas emissions from small-scale composting

    Nigatu, A. N., Kuyper, T. W., Bruun, Sander & de Neergaard, Andreas, 2016, In: Journal of Cleaner Production. 139, p. 429-439 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Delayed addition of nitrogen-rich substrates during composting of municipal waste: effects on nitrogen loss, greenhouse gas emissions and compost stability

    Nigatu, A. N., Bruun, Sander, Kuyper, T. W. & de Neergaard, Andreas, 2017, In: Chemosphere. 166, p. 352-362 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Closing the nutrient loops in (peri) urban farming systems through composting

    Nigatu, A. N., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids

    Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.

    Research output: Working paper › Preprint › Research

  39. Published

    Chromosomal regions associated with the in vitro culture response of wheat (Triticum aestivum L.) microspores

    Nielsen, N. H., Andersen, S. U., Stougaard, J., Jensen, A., Backes, G. M. & Jahoor, A., 2015, In: Plant Breeding. 134, 3, p. 255-263 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Deriving Environmental Life Cycle Inventory Factors for Land Application of Garden Waste Products Under Northern European Conditions

    Nielsen, M. P., Yoshida, H., Raji, S. G., Scheutz, C., Jensen, Lars Stoumann, Christensen, T. H. & Bruun, Sander, 1 Feb 2019, In: Environmental Modeling and Assessment. 24, 1, p. 21-35 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Accepted/In press

    Vesicle trafficking pathways in defence-related cell wall modifications - papillae and encasements: How plants use membrane trafficking to prevent infection by filamentous pathogens

    Nielsen, Mads Eggert, 2024, (Accepted/In press) 36 p.

    Research output: Working paper › Preprint › Research

  42. Published

    Transcytosis shuts the door for an unwanted guest

    Nielsen, M. E. & Thordal-Christensen, Hans, 2013, In: Trends in Plant Science. 18, 11, p. 611-616 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Loss of VPS9b enhances vps9a-2 phenotypes

    Nielsen, Mads Eggert & Thordal-Christensen, Hans, 2018, In: Plant Signaling & Behavior. 13, 4, 3 p., e1445950.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    VPS9a activates the Rab5 GTPase ARA7 to confer distinct pre- and postinvasive plant innate immunity

    Nielsen, Mads Eggert, Jürgens, G. & Thordal-Christensen, Hans, 2017, In: Plant Cell. 29, 8, p. 1927-1937 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Actinomyces, promising rhizobacteria for biological control of plant diseases

    Nguyen, T. T. N., Tien, D. T. K., Hau, N. P., Nhu, T. H., Ha, L. T. N., Linh, L. N., Thao, N. T. M., Nhieu, V. V. & Jørgensen, Hans Jørgen Lyngs, 2016, Recent Trends in PGPR Research for Sustainable Crop Productivity. Sayyed, R. Z., Reddy, M. S. & Al-Turki, A. I. (eds.). Scientific Publishers of India, p. 179-190

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  46. Published

    Dynamic of soil O2 affects N2O production pathways after application of cattle slurry and DMPP nitrification inhibitor

    Nguyen, Q. V., Wu, D., Kong, X., Bol, R., Jensen, Lars Stoumann, Petersen, S. O. & Bruun, Sander, 2016, 19th International Nitrogen Workshop: Efficient use of different sources of nitrogen in agriculture–from theory to practice. Abstracts. Sveriges Lantbruksuniversitet (SLU), p. 457-458 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  47. Published

    Effects of cattle slurry and nitrification inhibitor application on spatial soil O2 dynamics and N2O production pathways

    Nguyen, Q. V., Wu, D., Kong, X., Bol, R., Petersen, S. O., Jensen, Lars Stoumann, Liu, S., Brueggemann, N., Glud, R. N., Larsen, M. & Bruun, Sander, 2017, In: Soil Biology & Biochemistry. 114, p. 200-209 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Biogas digester hydraulic retention time affects oxygen consumption patterns and greenhouse gas emissions after application of digestate to soil

    Nguyen, Q. V., Jensen, Lars Stoumann, Bol, R., Wu, D., Triolo, J. M., Vazifehkhoran, A. H. & Bruun, Sander, 2017, In: Journal of Environmental Quality. 46, 5, p. 1114-1122 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Effects of Manure and Biogas Residues Application on N20 Emissions and Soil C Sequestration

    Nguyen, Q. V., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  50. Published

    Effects of hydraulic retention time of anaerobic co-digestion of pig slurry with agro-industrial waste on N2O emission

    Nguyen, Q. V., Vazifehkhoran, A. H., Wu, D., Jensen, Lars Stoumann, Bol, R., Petersen, S. O., Triolo, J. M., Glud, R. N., Larsen, M. & Bruun, Sander, 2016, Livestock Waste 2016 : Pollution control and resource recovery for the livestock sector. National University of Ireland, 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research

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