Section for Molecular Plant Biology

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  1. 2018
  2. Published

    The bHLH transcription factor ILR3 modulates multiple stress responses in Arabidopsis

    Samira, R., Li, B., Kliebenstein, D. J., Li, C., Davis, E., Gillikin, J. W. & Long, T. A., 2018, In: Plant Molecular Biology. 97, 4-5, p. 297-309 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The impacts of phosphorus deficiency on the photosynthetic electron transport chain

    Carstensen, A., Herdean, A., Schmidt, Sidsel Birkelund, Sharma, A., Spetea, C., Pribil, Mathias & Husted, Søren, 2018, In: Plant Physiology. 177, p. 271-284 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The intracellular localization of the vanillin biosynthetic machinery in pods of Vanilla planifolia

    Gallage, N. J., Jørgensen, Kirsten, Janfelt, Christian, Nielsen, A. J. Z., Naake, T., Dunski, E., Dalsten, L., Grisoni, M. & Møller, Birger Lindberg, 2018, In: Plant and Cell Physiology. 59, 2, p. 304-318 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

    Kindgren, P. R., Ard, R., Ivanov, M. & Marquardt, Sebastian, 2018, In: Nature Communications. 9, p. 1-11 4561.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Vitamin D-5 in Arabidopsis thaliana

    Silvestro, D., Villette, C., Delecolle, J., Olsen, C. E., Motawie, Mohammed Saddik, Geoffroy, P., Miesch, M., Jensen, Poul Erik, Heintz, D. & Schaller, H., 2018, In: Scientific Reports. 8, p. 1-8 16348.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. 2017
  8. Published

    Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana

    Prince, D. C., Rallapalli, G., Xu, Deyang, Schoonbeek, H., Cevik, V., Asai, S., Kemen, E., Cruz-Mireles, N., Kemen, A., Belhaj, K., Schornack, S., Kamoun, S., B Holub, E., Halkier, Barbara Ann & Jones, J. D. G., 2017, In: B M C Biology. 15, 22 p., 20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels

    Douglas, S. J., Li, B., Kliebenstein, D. J., Nambara, E. & Riggs, C. D., 2017, In: P L o S One. 12, 5, 20 p., e0177045.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    A young algaeneers' perspective: communication and networking are key to successful multidisciplinary research

    Matuszynska, A., Angeleri, M., Riseley, A., Ramos Martinez, E. M., Guerra, T. & Moejes, F. W., 2017, In: Algal Research. 21, p. 247-253 7 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  12. Published

    Advances in methods for identification and characterization of plant transporter function

    Larsen, B., Xu, Deyang, Halkier, Barbara Ann & Nour-Eldin, Hussam Hassan, 2017, In: Journal of Experimental Botany. 68, 15, p. 4045-4056 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  13. Published

    An NPF transporter exports a central monoterpene indole alkaloid intermediate from the vacuole

    Payne, R., Xu, Deyang, Foureau, E., Ines Soares Teto Carqueijeiro, M., Oudin, A., Dugé de Bernonville, T., Novák, V., Burow, Meike, Olsen, C. E., Jones, D. M., C. Tatsis, E., Pendleton, A., Halkier, Barbara Ann, Geu-Flores, Fernando, Courdavault, V., Nour-Eldin, Hussam Hassan & O'Connor, S. E., 2017, In: Nature Plants. 3, 9 p., 16208.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    An evolutionarily young defense metabolite influences the root growth of plants via the ancient TOR signaling pathway

    Malinovsky, F. G., Thomsen, M. F., Kjeldgaard-Nintemann, Sebastian J, Jagd, L. M., Bourgine, B., Burow, Meike & Kliebenstein, D. J., 2017, In: eLife. 6, 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    CASCADE, a platform for controlled gene amplification for high, tunable and selection-free gene expression in yeast

    Strucko, T., Buron, L. D., Jarczynska, Z. D., Nødvig, C. S., Mølgaard, L., Halkier, Barbara Ann & Mortensen, U. H., 2017, In: Scientific Reports. 7, 12 p., 41431.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Design and direct assembly of synthesized uracil-containing non-clonal DNA fragments into vectors by USERTM cloning

    Jørgensen, M. E., Wulff, N., Nafisi, M., Xu, Deyang, Wang, Cuiwei, Lambertz, S. K., Belew, Zeinu Mussa & Nour-Eldin, Hussam Hassan, 2017, In: Bio-protocol. 7, 22, 11 p., e2615.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Determination of the glycogen content in cyanobacteria

    Porcellinis, A. D., Frigaard, Niels-Ulrik & Sakuragi, Y., 2017, In: Journal of Visualized Experiments. 125, e56068.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Effective strategies to diagnose and correct manganese deficiency in cereals

    Husted, Søren, Schmidt, Sidsel Birkelund, Pedas, P. R., Jensen, Poul Erik, Laursen, Kristian Holst & Schjoerring, Jan K., 2017, Proceedings Book: XVIII International Plant Nutrition Colloquium with Boron and Manganese Satellite Meetings. Carstensen, A., Laursen, K. H. & Schjoerring, J. K. (eds.). University of Copenhagen, p. 939-940 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  19. Published

    Emerging properties and functional consequences of noncoding transcription

    Ard, R., Allshire, R. C. & Marquardt, Sebastian, 2017, In: Genetics (Print). 207, 2, p. 357-367 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field

    Kerwin, R. E., Feusier, J., Muok, A., Lin, C., Larson, B., Copeland, D., Corwin, J. A., Rubin, M. J., Francisco, M., Li, B., Joseph, B., Weinig, C. & Kliebenstein, D. J., 2017, In: New Phytologist. 215, 3, p. 1249-1263 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Foliar-applied ethephon enhances the content of anthocyanin of black carrot roots (Daucus carota ssp. sativus var. atrorubens Alef.)

    Barba Espin, G., Glied, S., Crocoll, C., Dzhanfezova, T., Joernsgaard, B., Okkels, F., Lütken, Henrik Vlk & Müller, Renate, 2017, In: B M C Plant Biology. 17, 11 p., 70.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    High-yield secretion of recombinant proteins from the microalga Chlamydomonas reinhardtii

    Ramos Martinez, E. M., Fimognari, L. & Sakuragi, Y., 2017, In: Plant Biotechnology Journal. 15, 9, p. 1214-1224 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    How does a plant orchestrate defense in time and space? Using glucosinolates in Arabidopsis as case study

    Burow, Meike & Halkier, Barbara Ann, 2017, In: Current Opinion in Plant Biology. 38, p. 142-147 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  24. Published

    Identification and characterization of jasmonate transporters: The role of jasmonate efflux in plant defense and development

    Lambertz, S. K., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 94 p.

    Research output: Book/Report › Ph.D. thesis › Research

  25. Published

    Identification and evolution of a plant cell wall specific glycoprotein glycosyl transferase, ExAD

    Möller, S. R., Yi, X., Vel?squez, S. M., Gille, S., Hansen, P., Poulsen, C. P., Olsen, C. E., Rejzek, M., Parsons, H. T., Yang, Zhang, Wandall, Hans H., Clausen, Henrik, Field, R. A., Pauly, M., Estevez, J. M., Harholt, J., Ulvskov, Peter & Petersen, Bent L, 2017, In: Scientific Reports. 7, 16 p., 45341.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Identification of iridoid glucoside transporters in Catharanthus roseus

    Larsen, B., Fuller, V. L., Pollier, J., Van Moerkercke, A., Schweizer, F., Payne, R., Colinas, M., O'Connor, S. E., Goossens, A. & Halkier, Barbara Ann, 2017, In: Plant and Cell Physiology. 58, 9, p. 1507-1518 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Isolation and structural characterization of echinocystic acid triterpenoid saponins from the Australian medicinal and food plant Acacia ligulata

    Knudsen, D. J., Ndi, C. P., Crocoll, C., Simpson, B. S., Khakimov, Bekzod, Guzman-Genuino, R. M., Hayball, J. D., Xing, X., Bulone, V., Weinstein, P., Møller, Birger Lindberg & Semple, S. J., 2017, In: Journal of Natural Products. 80, 10, p. 2692-2698 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Origin and evolution of transporter substrate specificity within the NPF family: [with Correction]

    Jørgensen, M. E., Xu, Deyang, Crocoll, C., Ernst, H. A., Ramírez, D., Motawie, Mohammed Saddik, Olsen, C. E., Mirza, Osman Asghar, Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2017, In: eLife. 6, 30 p., e19466.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Photosynthesis

    Pribil, Mathias & Leister, D. M., 2017, Encyclopedia of applied plant sciences. Thomas, B., Murray, B. G. & Murphy, D. J. (eds.). 2. ed. Elsevier, Vol. 1. p. 90-95 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Photosynthetic fuel for heterologous enzymes: the role of electron carrier proteins

    Mellor, Silas Busck, Vavitsas, K., Nielsen, A. J. Z. & Jensen, Poul Erik, 2017, In: Photosynthesis Research. 134, 3, p. 329-342 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Photosynthetic production of diterpenoids in chloroplasts and cyanobacteria

    Vavitsas, K., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Pitfalls and opportunities for epigenomic analyses focused on disease diagnosis, prognosis, and therapy

    Lauschke, V. M., Ivanov, M. & Ingelman-Sundberg, M., 2017, In: Trends in Pharmacological Sciences. 38, 9, p. 765-770 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Plastic transcriptomes stabilize immunity to pathogen diversity: the jasmonic acid and salicylic acid networks within the Arabidopsis/Botrytis pathosystem

    Zhang, W., Corwin, J. A., Copeland, D., Feusier, J., Eshbaugh, R., Chen, F., Atwell, S. & Kliebenstein, D. J., 2017, In: Plant Cell. 29, 11, p. 2727-2752 26 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Quantitative aspects and dynamic modelling of glucosinolate metabolism

    Vik, D., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Quantitative resistance: more than just perception of a pathogen

    Corwin, J. A. & Kliebenstein, D. J., 2017, In: Plant Cell. 29, 4, p. 655-665 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Reduction of antinutritional glucosinolates in Brassica oilseeds by mutation of genes encoding transporters

    Nour-Eldin, Hussam Hassan, Madsen, S. R., Engelen, S., Jørgensen, M. E., Olsen, C. E., Andersen, J. S., Seynnaeve, D., Verhoye, T., Fulawka, R., Denolf, P. & Halkier, Barbara Ann, 2017, In: Nature Biotechnology. 35, 4, p. 377-382 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways

    Vavitsas, K., Rue, E. Ø., Stefánsdóttir, L. K., Gnanasekaran, Thiyagarajan, Blennow, Andreas, Crocoll, C., Gudmundsson, S. & Jensen, Poul Erik, 2017, In: Microbial Cell Factories. 16, 1, 11 p., 140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Rhizosecretion of stele-synthesized glucosinolates and their catabolites requires GTR-mediated import in Arabidopsis

    Xu, Deyang, Hanschen, F. S., Witzel, K., Kjeldgaard-Nintemann, Sebastian J, Nour-Eldin, Hussam Hassan, Schreiner, M. & Halkier, Barbara Ann, 2017, In: Journal of Experimental Botany. 68, 12, p. 3205-3214 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    SNOWY COTYLEDON 2 promotes chloroplast development and has a role in leaf variegation in both Lotus japonicus and Arabidopsis thaliana

    Zagari, N., Sandoval Ibáñez, O. A., Sandal, N., Su, J., Rodriguez-Concepcion, M., Stougaard, J., Pribil, Mathias, Leister, D. M. & Pulido, P., 2017, In: Molecular Plant. 10, 5, p. 721-734 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Shine-dalgarno sequences play an essential role in the translation of plastid mRNAs in tobacco

    Scharff, L., Ehrnthaler, M., Janowski, M., Childs, L. H., Hasse, C., Gremmels, J., Ruf, S., Zoschke, R. & Bock, R., 2017, In: Plant Cell. 29, 12, p. 3085-3101 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of Zygaena larvae facilitates cyanide release

    Pentzold, S., Jensen, M. K., Matthes, A., Olsen, C. E., Petersen, Bent L, Clausen, Henrik, Møller, Birger Lindberg, Bak, Søren & Zagrobelny, Mika, 2017, In: Royal Society Open Science. 4, 13 p., 170262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Synthetic biology of cyanobacteria for production of biofuels and high-value products

    Klemenčič, M., Nielsen, A. Z., Sakuragi, Y., Frigaard, Niels-Ulrik, Čelešnik, H., Jensen, Poul Erik & Dolinar, M., 2017, Microalgae-Based Biofuels and Bioproducts: From Feedstock Cultivation to End-Products. Gonzalez-Fernandez, C. & Muñoz, R. (eds.). Duxford, UK: Elsevier Science Inc., p. 305-325 21 p. (Woodhead Publishing Series in Energy).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  43. Published

    Tat proteins as novel thylakoid membrane anchors organize a biosynthetic pathway in chloroplasts and increase product yield 5-fold

    Henriques de Jesus, M. P. R., Nielsen, A. J. Z., Mellor, Silas Busck, Matthes, A., Burow, Meike, Robinson, C. & Jensen, Poul Erik, 2017, In: Metabolic Engineering. 44, p. 108-116 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Tissue-specific gene-expression patterns of genes associated with thymol/carvacrol biosynthesis in thyme (Thymus vulgaris L.) and their differential changes upon treatment with abiotic elicitors

    Majdi, M., Malekzadeh-Mashhady, A., Maroufi, A. & Crocoll, C., 2017, In: Plant Physiology and Biochemistry. 115, p. 152-162 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Transcript profiling of a bitter variety of narrow-leafed lupin to discover alkaloid biosynthetic genes

    Yang, T., Nagy, I., Mancinotti, Davide, Otterbach, S. L., Andersen, T. B., Motawie, Mohammed Saddik, Asp, T. & Geu-Flores, Fernando, 2017, In: Journal of Experimental Botany. 68, 20, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Transcriptome and metabolite changes during hydrogen cyanamide-induced floral bud break in sweet cherry

    Ionescu, I. A., Lopez-Ortega, G., Burow, Meike, Bayo-Canha, A., Junge, A., Gericke, Oliver, Møller, Birger Lindberg & Sánchez Pérez, R., 2017, In: Frontiers in Plant Science. 8, 17 p., 1233.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Unravelling protein-protein interaction networks linked to aliphatic and indole glucosinolate biosynthetic pathways in arabidopsis

    Kjeldgaard-Nintemann, Sebastian J, Vik, D., Svozil, J., Bak, M., Baerenfaller, K., Burow, Meike & Halkier, Barbara Ann, 2017, In: Frontiers in Plant Science. 8, 20 p., 2028.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Uptake Assays in Xenopus laevis Oocytes Using Liquid Chromatography-mass Spectrometry to Detect Transport Activity

    Jørgensen, M., Crocoll, C., Halkier, Barbara Ann & Nour-Eldin, Hussam Hassan, 2017, In: Bio-protocol. 7, 20, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. 2016
  50. Published

    CB5C affects the glucosinolate profile in Arabidopsis thaliana

    Vik, D., Crocoll, C., Andersen, T. G., Burow, Meike & Halkier, Barbara Ann, 2016, In: Plant Signalling & Behavior. 11, 8, 6 p., e1160189.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    In vivo assembly of DNA-fragments in the moss, Physcomitrella patens

    King, B. C., Vavitsas, K., Binti Khairul Ikram, N. K., Schrøder, J., Scharff, L., Hamberger, B. R., Jensen, Poul Erik & Simonsen, H. T., 2016, In: Scientific Reports. 6, 7 p., 25030.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    A western blot protocol for detection of proteins heterologously expressed in Xenopus laevis oocytes

    Jørgensen, M. E., Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2016, Biotechnology of plant secondary metabolism: methods and protocols. Fett-Neto, A. G. (ed.). Springer, p. 99-107 9 p. (Methods in Molecular Biology, Vol. 1405).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  53. Published

    An easy and efficient permeabilization protocol for in vivo enzyme activity assays in cyanobacteria

    Rasmussen, R. E., Erstad, S. M., Ramos Martinez, E. M., Fimognari, L., de Porcellinis, A. J. & Sakuragi, Y., 2016, In: Microbial Cell Factories. 15, 11 p., 186.

    Research output: Contribution to journal › Journal article › Research › peer-review

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