Section for Molecular Plant Biology

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  1. Published

    Genetic variation underlying differential ammonium and nitrate responses in Arabidopsis thaliana

    Katz, E., Knapp, A., Lensink, M., Keller, C. K., Stefani, J., Li, J., Shane, E., Tuermer-Lee, K., Bloom, A. J. & Kliebenstein, D. J., 2022, In: The Plant Cell. 34, 12, p. 4696-4713

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Diverse Allyl Glucosinolate Catabolites Independently Influence Root Growth and Development

    Katz, E., Bagchi, R., Jeschke, V., Rasmussen, A. R. M., Hopper, A., Burow, Meike, Estelle, M. & Kliebenstein, D. J., 2020, In: Plant Physiology. 183, 3, p. 1376-1390 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness

    Kazachkova, Y., Zemach, I., Panda, S., Bocobza, S., Vainer, A., Rogachev, I., Dong, Y., Ben-Dor, S., Veres, D., Kanstrup, Christa, Lambertz, S. K., Crocoll, C., Hu, Y., Shani, E., Michaeli, S., Nour-Eldin, Hussam Hassan, Zamir, D. & Aharoni, A., 2021, In: Nature Plants. 7, p. 468-480

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness

    Kerwin, R., Feusier, J., Corwin, J., Rubin, M., Lin, C., Muok, A., Larson, B., Li, B., Joseph, B., Francisco, M., Copeland, D., Weinig, C. & Kliebenstein, D. J., 2015, In: eLife. 4, 28 p., e05604.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Epistasis × environment interactions among Arabidopsis thaliana glucosinolate genes impact complex traits and fitness in the field

    Kerwin, R. E., Feusier, J., Muok, A., Lin, C., Larson, B., Copeland, D., Corwin, J. A., Rubin, M. J., Francisco, M., Li, B., Joseph, B., Weinig, C. & Kliebenstein, D. J., 2017, In: New Phytologist. 215, 3, p. 1249-1263 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

    Kindgren, P., Ivanov, M. & Marquardt, Sebastian, 2020, In: Nucleic Acids Symposium Series. 48, 5, p. 2332-2347 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The Chloroplast Talks - Insights into the language of the chloroplast in Arabidopsis

    Kindgren, P. R., Oct 2010

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

    Kindgren, P. R., Ard, R., Ivanov, M. & Marquardt, Sebastian, 2018, In: Nature Communications. 9, p. 1-11 4561.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    In vivo assembly of DNA-fragments in the moss, Physcomitrella patens

    King, B. C., Vavitsas, K., Binti Khairul Ikram, N. K., Schrøder, J., Scharff, L., Hamberger, B. R., Jensen, Poul Erik & Simonsen, H. T., 2016, In: Scientific Reports. 6, 7 p., 25030.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Sequence and RT-PCR expression analysis of two peroxidases from Arabidopsis thaliana belonging to a novel evolutionary branch of plant peroxidases

    Kjærsgård, I. V. H., Jespersen, H. M., Rasmussen, S. K. & Welinder, K. G., 1 Mar 1997, In: Plant Molecular Biology. 33, 4, p. 699-708 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Retrograde signaling: organelles go networking

    Kleine, T. & Leister, D. M., 2016, In: BBA Bioenergetics. 1857, 8, p. 1313-1325 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Synthetic biology of cyanobacteria for production of biofuels and high-value products

    Klemenčič, M., Nielsen, A. Z., Sakuragi, Y., Frigaard, Niels-Ulrik, Čelešnik, H., Jensen, Poul Erik & Dolinar, M., 2017, Microalgae-Based Biofuels and Bioproducts: From Feedstock Cultivation to End-Products. Gonzalez-Fernandez, C. & Muñoz, R. (eds.). Duxford, UK: Elsevier Science Inc., p. 305-325 21 p. (Woodhead Publishing Series in Energy).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    Questionomics: Using Big Data to Ask and Answer Big Questions

    Kliebenstein, D. J., 2019, In: Plant Cell. 31, 7, p. 1404-1405

    Research output: Contribution to journal › Editorial › Research

  14. Published

    Using networks to identify and interpret natural variation

    Kliebenstein, D. J., 2020, In: Current Opinion in Plant Biology. 54, p. 122-126 5 p.

    Research output: Contribution to journal › Review › Research › peer-review

  15. Published

    False idolatry of the mythical growth versus immunity tradeoff in molecular systems plant pathology

    Kliebenstein, D. J., 2016, In: Physiological and Molecular Plant Pathology. 95, p. 55-59 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Orchestration of plant defense systems: genes to populations

    Kliebenstein, D. J., 2014, In: Trends in Plant Science. 19, 4, p. 250-255 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Nonlinear selection and a blend of convergent, divergent and parallel evolution shapes natural variation in glucosinolates

    Kliebenstein, D. J. & Cacho, N. I., 2016, Advances in botanical research. Elsevier, Vol. 80. p. 31-55 25 p. (Advances in Botanical Research).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  18. Published

    Comparative fermentation of insoluble carbohydrates in an in vitro human feces model spiked with Lactobacillus acidophilus NCFM

    Knudsen, A., van Zanten, G. C., Jensen, S. L., Forssten, S. D., Saarinen, M., Lahtinen, S. J., Bandsholm, O., Svensson, B., Jespersen, Lene & Blennow, Andreas, 2013, In: Starch. 65, 3-4, p. 346-353 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Biological activity and LC-MS/MS profiling of extracts from the Australian medicinal plant Acacia ligulata (Fabaceae)

    Knudsen, D. J., Simpson, B. S., Ndi, C. P., Jäger, A., Crocoll, C., Møller, Birger Lindberg, Weinstein, P. & Semple, S. J., 2018, In: Natural Product Research. 32, 5, p. 576-581 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Isolation and structural characterization of echinocystic acid triterpenoid saponins from the Australian medicinal and food plant Acacia ligulata

    Knudsen, D. J., Ndi, C. P., Crocoll, C., Simpson, B. S., Khakimov, Bekzod, Guzman-Genuino, R. M., Hayball, J. D., Xing, X., Bulone, V., Weinstein, P., Møller, Birger Lindberg & Semple, S. J., 2017, In: Journal of Natural Products. 80, 10, p. 2692-2698 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Possible use of a biotechnological approach to optimize and regulate the content and distribution of cyanogenic glucosides in cassava

    Koch, B. M., Sibbesen, O., Swain, E., Kahn, R. A., Du, L., Bak, Søren, Halkier, Barbara Ann & Møller, Birger Lindberg, 1994, In: Acta Horticulturae. 375, p. 45-60 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The Biosynthesis of Cyanogenic Glucosides in Seedlings of Cassava (Manihot esculenta Crantz)

    Koch, B., Nielsen, V. S., Halkier, Barbara Ann, Olsen, C. E. & Møller, Birger Lindberg, Jan 1992, In: Archives of Biochemistry and Biophysics. 292, 1, p. 141-150 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The primary sequence of cytochrome P-450TYR, the multifunctional N-hydroxylase catalyzing the conversion of L-tyrosine to p-hydroxyphenylacetaldehyde oxime in the biosynthesis of the cyanogenic glucoside dhurrin in Sorghum bicolor (L.) Moench

    Koch, B. M., Sibbesen, O., Halkier, Barbara Ann, Svendsen, I. & Møller, Birger Lindberg, 20 Oct 1995, In: Archives of Biochemistry and Biophysics. 323, 1, p. 177-186 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Detoxification of the Fusarium mycotoxin zearalenone is an important trait of Chlonostachys rosea in biocontrol of Fusarium foot rot of barley

    Kosawang, Chatchai, Karlsson, M., Jensen, Birgit, Vélëz, H., Rasmussen, P. H., Collinge, David B. & Jensen, Dan Funck, 2013, Biological control of fungal and bacterial plant pathogens. International Organisation for Biological and Integrated Control (IOBC), p. 133-136 4 p. (IOBC-WPRS Bulletin, Vol. 86).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  25. Published

    The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana

    Krahmer, J., Hindle, M., Perby, L. K., Mogensen, Helle Kildal, Nielsen, T. H., Halliday, K. J., van Ooijen, G., Le Bihan, T. & Millar, A. J., 2022, In: Molecular and Cellular Proteomics. 21, 1, 20 p., 100172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase

    Krause, S. T., Liao, P., Crocoll, C., Boachon, B., Foerster, C., Leidecker, F., Wiese, N., Zhao, D., Wood, J. C., Buell, C. R., Gershenzon, J., Dudareva, N. & Degenhardt, J., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 10 p., e2110092118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Polygenic pathogen networks influence transcriptional plasticity in the Arabidopsis-Botrytis pathosystem

    Krishnan, Parvathy, Caseys, C., Soltis, N., Zhang, W., Burow, Meike & Kliebenstein, D. J., 2023, In: Genetics. 224, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A study of the spatial distribution patterns of airborne polycyclic aromatic hydrocarbons in crowberry (Empetrum nigrum) in Ilulissat, Greenland

    Kronik, Oskar Munk, Prothmann, J., Troché, Gaudry Bruno, Svensmark, Bo, Nielsen, Nikoline Juul & Christensen, Jan H., 2021, In: Environmental Science and Pollution Research. 28, p. 23133-23142

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Proton Gradient Regulation5-Like1-Mediated Cyclic Electron Flow Is Crucial for Acclimation to Anoxia and Complementary to Nonphotochemical Quenching in Stress Adaptation

    Kukuczka, B., Magneschi, L., Petroutsos, D., Steinbeck, J., Bald, T., Powikrowska, M., Fufezan, C., Finazzi, G. & Hippler, M., 1 Aug 2014, In: Plant Physiology. 165, 4, p. 1604-1617 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    The antimycin A-sensitive pathway of cyclic electron flow: from 1963 to 2015

    Labs, M., Rühle, T. & Leister, D. M., 2016, In: Photosynthesis Research. 129, 3, p. 231-238 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Molecular mechanisms governing differential robustness of development and environmental responses in plants

    Lachowiec, J., Queitsch, C. & Kliebenstein, D. J., 2016, In: Annals of Botany. 117, 5, p. 795-809 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Identification and characterization of jasmonate transporters: The role of jasmonate efflux in plant defense and development

    Lambertz, S. K., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 94 p.

    Research output: Book/Report › Ph.D. thesis › Research

  33. Published

    Advances in methods for identification and characterization of plant transporter function

    Larsen, B., Xu, Deyang, Halkier, Barbara Ann & Nour-Eldin, Hussam Hassan, 2017, In: Journal of Experimental Botany. 68, 15, p. 4045-4056 12 p.

    Research output: Contribution to journal › Review › Research › peer-review

  34. Published

    Plant Transporter Identification: A High-Throughput Functional Genomics Approach

    Larsen, B., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 70 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    Identification of iridoid glucoside transporters in Catharanthus roseus

    Larsen, B., Fuller, V. L., Pollier, J., Van Moerkercke, A., Schweizer, F., Payne, R., Colinas, M., O'Connor, S. E., Goossens, A. & Halkier, Barbara Ann, 2017, In: Plant and Cell Physiology. 58, 9, p. 1507-1518 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Engineering mammalian cells to produce plant-specific N-glycosylation on proteins

    Larsen, J. S., Karlsson, R. T. G., Tian, W., Schulz, M. A., Matthes, A., Clausen, Henrik, Petersen, Bent L & Yang, Zhang, 2020, In: Glycobiology. 30, 8, p. 528-538 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Redirecting photosynthetic electron flow into light-driven synthesis of alternative products including high-value bioactive natural compounds

    Lassen, L. M. M., Nielsen, A. J. Z., Ziersen, B. E. F., Gnanasekaran, Thiyagarajan, Møller, Birger Lindberg & Jensen, Poul Erik, 2014, In: A C S Synthetic Biology. 3, 1, p. 1-12 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Anchoring a plant cytochrome P450 via PsaM to the thylakoids in Synechococcus sp. PCC 7002: evidence for light-driven biosynthesis

    Lassen, L. M. M., Nielsen, A. J. Z., Olsen, C. E., Bialek, W., Jensen, K., Møller, Birger Lindberg & Jensen, Poul Erik, 2014, In: P L o S One. 9, 7, 10 p., e102184.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Characterization of a dynamic metabolon producing the defense compound dhurrin in sorghum

    Laursen, Tomas, Borch-Jensen, J., Baden, C. K., Bavishi, K., Torta, F., Martens, Helle Jakobe, Silvestro, D., Hatzakis, Nikos, Wenk, M. R., Dafforn, T. R., Olsen, C. E., Motawie, Mohammed Saddik, Hamberger, B. R., Møller, Birger Lindberg & Bassard, J. A., 2016, In: Science (New York, N.Y.). 354, 6314, p. 890-893 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Pitfalls and opportunities for epigenomic analyses focused on disease diagnosis, prognosis, and therapy

    Lauschke, V. M., Ivanov, M. & Ingelman-Sundberg, M., 2017, In: Trends in Pharmacological Sciences. 38, 9, p. 765-770 6 p.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    An ancient metabolite damage-repair system sustains photosynthesis in plants

    Leister, D., Sharma, A., Kerber, N., Nägele, T., Reiter, B., Pasch, V., Beeh, S., Jahns, P., Barbato, R., Pribil, Mathias & Rühle, T., 2023, In: Nature Communications. 14, 12 p., 3023.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Towards understanding the evolution and functional diversification of DNA-containing plant organelles: [version 1; referees: 3 approved]

    Leister, D. M., 2016, In: F1000Research. 5, 330.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Organismal benefits of transcription speed control at gene boundaries

    Leng, Xueyuan, Ivanov, M., Kindgren, P., Malik, I., Thieffry, A., Brodersen, Peter, Sandelin, Albin Gustav, Kaplan, C. D. & Marquardt, Sebastian, 2020, In: EMBO Reports. 21, 4, 16 p., e49315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    The Roles of Transcription Speed and Transcriptional Interference in Plant Gene Expression

    Leng, Xueyuan, 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  45. Published

    A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

    Leng, Xueyuan, Thomas, Quentin, Rasmussen, S. H. & Marquardt, Sebastian, 2020, In: Trends in Plant Science. 25, 8, p. 744-764

    Research output: Contribution to journal › Review › Research › peer-review

  46. Published

    Promoter-Based Integration in Plant Defense Regulation

    Li, B., Gaudinier, A., Tang, M., Taylor-Teeples, M., Nham, N. T., Ghaffari, C., Benson, D. S., Steinmann, M., Gray, J. A., Brady, S. M. & Kliebenstein, D. J., 1 Dec 2014, In: Plant Physiology. 166, 4, p. 1803-1820 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    An integrative genetic study of rice metabolism, growth and stochastic variation reveals potential C/N partitioning loci

    Li, B., Zhang, Y., Mohammadi, S. A., Huai, D., Zhou, Y. & Kliebenstein, D. J., 2016, In: Scientific Reports. 6, 13 p., 30143.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis

    Li, B., Tang, M., Nelson, A., Caligagan, H., Zhou, X., Clark-Wiest, C., Ngo, R., Brady, S. M. & Kliebenstein, D. J., 2018, In: Plant Cell. 30, 1, p. 178-195

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense

    Li, B., Tang, M., Caseys, C., Nelson, A., Zhou, M., Zhou, X., Brady, S. M. & Kliebenstein, D. J., 2020, In: Genetics. 214, 2, p. 529-541 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Human intrinsic factor expression for bioavailable vitamin B12 enrichment in microalgae

    Lima, S., Webb, C. L., Deery, E., Robinson, C. & Zedler, J. A. Z., 2018, In: Biology. 7, 1, 13 p., 19.

    Research output: Contribution to journal › Journal article › Research › peer-review

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