Section for Molecular Plant Biology

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  1. 2021
  2. Published

    PTR2/POT/NPF transporters: what makes them tick?

    Prabhala, B. K., Rahman, M., Nour-Eldin, Hussam Hassan, Jørgensen, Flemming Steen & Mirza, Osman Asghar, 2021, In: Advances in Protein Chemistry and Structural Biology. 123, p. 219-240 22 p.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Quantitative interactions: The disease outcome of Botrytis cinerea across the plant kingdom

    Caseys, C., Shi, G., Soltis, N., Gwinner, R., Corwin, J., Atwell, S. & Kliebenstein, D. J., 2021, In: G3: Genes, Genomes, Genetics. 11, 8, 15 p., jkab175.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Root-type ferredoxin-NADP+ oxidoreductase isoforms in Arabidopsis thaliana: Expression patterns, location and stress responses

    Grabsztunowicz, M., Rantala, M., Ivanauskaite, A., Blomster, T., Koskela, M. M., Vuorinen, K., Tyystjarvi, E., Burow, Meike, Overmyer, K., Mahonen, A. P. & Mulo, P., 2021, In: Plant, Cell and Environment. 44, 2, p. 548-558 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Scission of Glucosidic Bonds by a Lentinus similis Lytic Polysaccharide Monooxygenases Is Strictly Dependent on H2O2while the Oxidation of Saccharide Products Depends on O2

    Brander, Søren, Tokin, Radina, Ipsen, J., Jensen, Poul Erik, Hernández-Rollán, C., Nørholm, M. H. H., Lo Leggio, Leila, Dupree, P. & Johansen, Katja Salomon, 2021, In: ACS Catalysis. 11, 22, p. 13848-13859

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Specialized metabolites and valuable molecules in crop and medicinal plants: The evolution of their use and strategies for their production

    D’Amelia, V., Docimo, T., Crocoll, C. & Rigano, M. M., 2021, In: Genes. 12, 6, 20 p., 936.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Stationary sieve element proteins

    Sanden, Niels Christian Holm & Schulz, Alexander, 2021, In: Journal of Plant Physiology. 266, 10 p., 153511.

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    Sugar transporters enable a leaf beetle to accumulate plant defense compounds

    Yang, Z. L., Nour-Eldin, Hussam Hassan, Hänniger, S., Reichelt, M., Crocoll, C., Seitz, F., Vogel, H. & Beran, F., 2021, In: Nature Communications. 12, 1, 12 p., 2658.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness

    Kazachkova, Y., Zemach, I., Panda, S., Bocobza, S., Vainer, A., Rogachev, I., Dong, Y., Ben-Dor, S., Veres, D., Kanstrup, Christa, Lambertz, S. K., Crocoll, C., Hu, Y., Shani, E., Michaeli, S., Nour-Eldin, Hussam Hassan, Zamir, D. & Aharoni, A., 2021, In: Nature Plants. 7, p. 468-480

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency

    Gowthaman, U., Ivanov, M., Schwarz, Isabel Aimèe, Patel, H. P., Müller, N. A., Garcia Pichardo, Desire, Lenstra, T. L. & Marquardt, Sebastian, 2021, In: EMBO Journal. 40, 23, 16 p., 108903.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase

    Krause, S. T., Liao, P., Crocoll, C., Boachon, B., Foerster, C., Leidecker, F., Wiese, N., Zhao, D., Wood, J. C., Buell, C. R., Gershenzon, J., Dudareva, N. & Degenhardt, J., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 10 p., e2110092118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, M., Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    VC1 catalyses a key step in the biosynthesis of vicine in faba bean

    Björnsdotter, E., Nadzieja, M., Chang, W., Escobar-Herrera, L., Mancinotti, Davide, Angra, D., Xia, Xinxing, Tacke, R., Khazaei, H., Crocoll, C., Vandenberg, A., Link, W., Stoddard, F. L., O'Sullivan, D. M., Stougaard, J., Schulman, A. H., Andersen, S. U. & Geu-Flores, Fernando, 2021, In: Nature Plants. 7, p. 923–931

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Winter fields antisense RNAs to kick off flowering

    Jin, Yu & Marquardt, Sebastian, 2021, In: Genes and Development. 38, 11-12, p. 785-786 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. 2020
  16. Published

    Biochemical evidence of both copper chelation and oxygenase activity at the histidine brace

    Brander, Søren, Horvath, I., Ipsen, J. Ø., Peciulyte, A., Olsson, L., Hernández-rollán, C., Nørholm, M. H. H., Mossin, S., Lo Leggio, Leila, Probst, C., Thiele, D. J. & Johansen, Katja Salomon, 1 Dec 2020, In: Scientific Reports. 10, 1, 11 p., 16369.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The synergy between LPMOs and cellulases in enzymatic saccharification of cellulose is both enzyme- and substrate-dependent

    Tokin, Radina, Ipsen, J. Ø., Westh, P. & Johansen, Katja Salomon, 1 Oct 2020, In: Biotechnology Letters. 42, 10, p. 1975-1984 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The γ-hydroxybutyric acid (GHB) analogue NCS-382 is a substrate for both monocarboxylate transporters subtypes 1 and 4

    Thiesen, L., Belew, Zeinu Mussa, Griem-Krey, Nane, Pedersen, Stine Helene Falsig, Crocoll, C., Nour-Eldin, Hussam Hassan & Wellendorph, Petrine, 15 Feb 2020, In: European Journal of Pharmaceutical Sciences. 143, p. 1-9 105203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Metabolic engineering of Synechocystis sp. PCC 6803 for the production of aromatic amino acids and derived phenylpropanoids

    Brey, L. F., Włodarczyk, A. J., Bang Thøfner, J. F., Burow, Meike, Crocoll, C., Nielsen, I., Zygadlo Nielsen, A. J. & Jensen, Poul Erik, Jan 2020, In: Metabolic Engineering. 57, p. 129-139

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A CRISPR way for accelerating improvement of food crops

    Zhang, Yi, Pribil, Mathias, Palmgren, Michael & Gao, C., 2020, In: Nature Food. 1, 4, p. 200-205 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

    Leng, Xueyuan, Thomas, Quentin, Rasmussen, S. H. & Marquardt, Sebastian, 2020, In: Trends in Plant Science. 25, 8, p. 744-764

    Research output: Contribution to journal › Review › Research › peer-review

  22. Published

    A flavin-dependent monooxygenase catalyzes the initial step in cyanogenic glycoside synthesis in ferns

    Thodberg, S., Sørensen, Mette, Bellucci, M., Crocoll, C., Bendtsen, Amalie Kofoed, Nelson, D. R., Motawie, Mohammed Saddik, Møller, Birger Lindberg & Neilson, Elizabeth Heather Jakobsen, 2020, In: Communications Biology . 3, 11 p., 507.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Antimicrobial solid media for screening non‐sterile Arabidopsis thaliana seeds

    Behrendorff, J., Borràs I Gas, G. & Pribil, Mathias, 2020, In: Physiologia Plantarum.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways

    Thieffry, A., Vigh, Maria Louisa, Lange, Jette Bornholdt, Ivanov, M., Brodersen, Peter & Sandelin, Albin Gustav, 2020, In: The Plant Cell. 32, 6, p. 1845-1867 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Characterization of Arabidopsis CYP79C1 and CYP79C2 by Glucosinolate Pathway Engineering in Nicotiana benthamiana Shows Substrate Specificity Toward a Range of Aliphatic and Aromatic Amino Acids

    Wang, Cuiwei, Dissing, M. M., Agerbirk, Niels, Crocoll, C. & Halkier, Barbara Ann, 2020, In: Frontiers in Plant Science. 11, 13 p., 57.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Control of flowering in rice through synthetic microProteins

    qmd783, qmd783, Ariza, J. G., Brambilla, V., Sun, B., Bhati, K. K., Fornara, F. & Wenkel, Stephan, 2020, In: Journal of Integrative Plant Biology. 62, 6, p. 730-736

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Copper toxicity affects indolic glucosinolates and gene expression of key enzymes for their biosynthesis in Chinese cabbage

    Aghajanzadeh, T. A., Prajapati, D. H. & Burow, Meike, 2020, In: Archives of Agronomy and Soil Science. 66, 9, p. 1288-1301

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    DNA Processing in the Context of Noncoding Transcription

    Gowthaman, U., Garcia Pichardo, Desire, Jin, Yu, Schwarz, Isabel Aimèe & Marquardt, Sebastian, 2020, In: Trends in Biochemical Sciences. 45, 12, p. 1009-1021

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    De novo indol-3-ylmethyl glucosinolate biosynthesis, and not long-distance transport, contributes to defence of Arabidopsis against powdery mildew

    Hunziker, P., Ghareeb, H., Wagenknecht, L., Crocoll, C., Halkier, Barbara Ann, Lipka, V. & Schulz, Alexander, 2020, In: Plant, Cell and Environment. 43, 6, p. 1571-1583 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Detection and characterization of a novel copper-dependent intermediate in a lytic polysaccharide monooxygenase

    Singh, R. K., Möllers Blossom, B., Russo, D. A., Singh, R., Weihe, Høgni, Andersen, N. H., Tiwari, M. K., Jensen, Poul Erik, Felby, C. & Bjerrum, Morten Jannik, 2020, In: Chemistry - A European Journal. 26, 2, p. 454-463 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Differential partitioning of thiols and glucosinolates between shoot and root in Chinese cabbage upon excess zinc exposure

    Aghajanzadeh, T. A., Prajapati, D. H. & Burow, Meike, 2020, In: Journal of Plant Physiology. 244, 9 p., 153088.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Dissection of microProtein Signaling in Plant Development

    Sun, B., 2020, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 179 p.

    Research output: Book/Report › Ph.D. thesis › Research

  33. Published

    Diverse Allyl Glucosinolate Catabolites Independently Influence Root Growth and Development

    Katz, E., Bagchi, R., Jeschke, V., Rasmussen, A. R. M., Hopper, A., Burow, Meike, Estelle, M. & Kliebenstein, D. J., 2020, In: Plant Physiology. 183, 3, p. 1376-1390 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Dual sgRNA-based Targeted Deletion of Large Genomic Regions and Isolation of Heritable Cas9-free Mutants in Arabidopsis

    Jin, Yu & Marquardt, Sebastian, 2020, In: Bio-protocol. 10, 20, 17 p., 3796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Engineering mammalian cells to produce plant-specific N-glycosylation on proteins

    Larsen, J. S., Karlsson, R. T. G., Tian, W., Schulz, M. A., Matthes, A., Clausen, Henrik, Petersen, Bent L & Yang, Zhang, 2020, In: Glycobiology. 30, 8, p. 528-538 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Epistatic Transcription Factor Networks Differentially Modulate Arabidopsis Growth and Defense

    Li, B., Tang, M., Caseys, C., Nelson, A., Zhou, M., Zhou, X., Brady, S. M. & Kliebenstein, D. J., 2020, In: Genetics. 214, 2, p. 529-541 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes

    Fernández‐calvo, P., Iñigo, S., Glauser, G., Vanden Bossche, R., Tang, M., Li, B., De Clercq, R., Nagels Durand, A., Eeckhout, D., Gevaert, K., De Jaeger, G., Brady, S. M., Kliebenstein, D. J., Pauwels, L., Goossens, A. & Ritter, A., 2020, In: New Phytologist. 227, 4, p. 1124-1137

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Glucosinolate structural diversity, identification, chemical synthesis and metabolism in plants

    Blažević, I., Montaut, S., Burčul, F., Olsen, C. E., Burow, Meike, Rollin, P. & Agerbirk, Niels, 2020, In: Phytochemistry. 169, 57 p., 112100.

    Research output: Contribution to journal › Review › Research › peer-review

  39. Published

    Heterologous microProtein expression identifies LITTLE NINJA, a dominant regulator of jasmonic acid signaling

    Hong, S., Sun, B., Straub, D., Blaakmeer, A., Mineri, L., Koch, J., Brinch-Pedersen, H., Holme, I. B., Burow, Meike, Jørgensen, Hans Jørgen Lyngs, Mar Alba, M. & Wenkel, Stephan, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 42, p. 26197-26205 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

    Hufnagel, B., Marques, A., Soriano, A., Marquès, L., Divol, F., Doumas, P., Sallet, E., Mancinotti, D., Carrere, S., Marande, W., Arribat, S., Keller, J., Huneau, C., Blein, T., Aimé, D., Laguerre, M., Taylor, J., Schubert, V., Nelson, M., Geu-Flores, F. & 8 others, Crespi, M., Gallardo, K., Delaux, P., Salse, J., Bergès, H., Guyot, R., Gouzy, J. & Péret, B., 2020, In: Nature Communications. 11, 1, 12 p., 492.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    IDDomainSpotter: Compositional bias reveals domains in long disordered protein regions—Insights from transcription factors

    Millard, P. S., Bugge, K., Marabini, R., Boomsma, Wouter, Burow, Meike & Kragelund, Birthe Brandt, 2020, In: Protein Science. 29, 1, p. 169-183 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Identification and characterization of phlorizin transporter from Arabidopsis thaliana and its application for phlorizin production in Saccharomyces cerevisiae

    Belew, Zeinu Mussa, Crocoll, C., Møller-Hansen, I., Naesby, M., Borodina, I. & Nour-Eldin, Hussam Hassan, 2020, bioRxiv, 28 p.

    Research output: Working paper › Preprint › Research

  43. Published

    In Arabidopsis thaliana Substrate Recognition and Tissue- as Well as Plastid Type-Specific Expression Define the Roles of Distinct Small Subunits of Isopropylmalate Isomerase

    Lächler, K., Clauss, K., Imhof, J., Crocoll, C., Schulz, Alexander, Halkier, Barbara Ann & Binder, S., 2020, In: Frontiers in Plant Science. 11, 18 p., 808.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling

    Manzotti, A., Bergna, A., Burow, Meike, Jørgensen, Hans Jørgen Lyngs, Cernava, T., Berg, G., Collinge, David B. & Jensen, Birgit, 2020, In: FEMS Microbiology Ecology. 96, 5, 16 p., fiaa052.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Light affects tissue patterning of the hypocotyl in the shade-avoidance response

    Botterweg-Paredes, E., Blaakmeer, A., Hong, S., Sun, B., Mineri, L., Kruusvee, Valdeko, Xie, Y., Straub, D., Menard, D., Pesquet, E. & Wenkel, Stephan, 2020, In: PLOS Genetics. 16, 3, 22 p., e1008678.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry Imaging of Metabolites during Sorghum Germination

    Montini, L., Crocoll, C., Gleadow, R. M., Motawia, M. S., Janfelt, Christian & Bjarnholt, Nanna, 2020, In: Plant Physiology. 183, 3, p. 925-942 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Mitochondrial dysfunction induced by variation in the non-coding genome – A proposed workflow to improve diagnostics

    du Mee, D. J. M., Bak, M., Østergaard, Elsebet & Rasmussen, Lene Juel, 2020, In: Mitochondrion. 53, p. 255-259

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

    Kindgren, P., Ivanov, M. & Marquardt, Sebastian, 2020, In: Nucleic Acids Symposium Series. 48, 5, p. 2332-2347 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Organismal benefits of transcription speed control at gene boundaries

    Leng, Xueyuan, Ivanov, M., Kindgren, P., Malik, I., Thieffry, A., Brodersen, Peter, Sandelin, Albin Gustav, Kaplan, C. D. & Marquardt, Sebastian, 2020, In: EMBO Reports. 21, 4, 16 p., e49315.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    PROTEIN PHOSPHATASE 2A-B'γ Controls Botrytis cinerea Resistance and Developmental Leaf Senescence

    Durian, G., Jeschke, V., Rahikainen, M., Vuorinen, K., Gollan, P. J., Brosché, M., Salojärvi, J., Glawischnig, E., Winter, Z., Li, S., Noctor, G., Aro, E., Kangasjärvi, J., Overmyer, K., Burow, Meike & Kangasjärvi, S., 2020, In: Plant Physiology. 182, 2, p. 1161-1181 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Pathogen Genetic Control of Transcriptome Variation in the Arabidopsis thaliana – Botrytis cinerea Pathosystem

    Soltis, N. E., Caseys, C., Zhang, W., Corwin, J. A., Atwell, S. & Kliebenstein, D. J., 2020, In: Genetics. 215, 1, p. 253-266

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Pectin Synthesis and Pollen Tube Growth in Arabidopsis Involves Three GAUT1 Golgi-Anchoring Proteins: GAUT5, GAUT6, and GAUT7

    Lund, C. H., Stenbaek, A., Atmodjo, M. A., Rasmussen, R. E., Moller, I. E., Erstad, S. M., Biswal, A. K., Mohnen, D., Mravec, Jozef & Sakuragi, Y., 2020, In: Frontiers in Plant Science. 11, 15 p., 585774.

    Research output: Contribution to journal › Journal article › Research › peer-review

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