Section for Molecular Plant Biology

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  1. Published

    Insights on the evolution of mycoparasitism from the genome of Clonostachys rosea

    Karlsson, M., Durling, M. B., Choi, J., Kosawang, C., Lackner, G., Tzelepis, G. D., Nygren, K., Dubey, M. K., Kamou, N., Levasseur, A., Zapparata, A., Wang, J., Amby, D. B., Jensen, B., Sarrocco, S., Panteris, E., Lagopodi, A. L., Pöggeler, S., Vannacci, G., Collinge, D. B. & 4 others, Hoffmeister, D., Henrissat, B., Lee, Y. & Jensen, Dan Funck, 2015, In: Genome Biology and Evolution. 7, 2, p. 465-480 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Integration of biosynthesis and long-distance transport establish organ-specific glucosinolate profiles in vegetative Arabidopsis

    Andersen, T. G., Nour-Eldin, Hussam Hassan, Fuller, V. L., Olsen, C. E., Burow, Meike & Halkier, Barbara Ann, 2013, In: Plant Cell. 25, 8, p. 3133-3145 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Interactions of Tomato and Botrytis cinerea Genetic Diversity: Parsing the Contributions of Host Differentiation, Domestication, and Pathogen Variation

    Soltis, N. E., Atwell, S., Shi, G., Fordyce, R., Gwinner, R., Gao, D., Shafi, A. & Kliebenstein, D. J., 2019, In: Plant Cell. 31, 2, p. 502-519

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Interplays between the cell wall and phytohormones in interaction between plants and necrotrophic pathogens

    Nafisi, M., Fimognari, L. & Sakuragi, Y., 2015, In: Phytochemistry. 112, p. 63-71 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Inverse pH Gradient-Assay for Facile Characterization of Proton-Antiporters in Xenopus Oocytes

    Belew, Zeinu Mussa, Kanstrup, Christa, Hua, C., Crocoll, C. & Nour-Eldin, Hussam Hassan, 2024, In: Membranes. 14, 2, 11 p., 39.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Investigation of the multifunctional gene AOP3 expands the regulatory network fine-tuning glucosinolate production in Arabidopsis

    Jensen, L. M., Kliebenstein, D. J. & Burow, Meike, 2015, In: Frontiers in Plant Science. 6, 15 p., 762.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Invisible detergents for structure determination of membrane proteins by small-angle neutron scattering

    Midtgaard, S. R., Darwish, T. A., Pedersen, M. C., Huda, P., Larsen, A. H., Jensen, G. V., Kynde, S. A. R., Skar-Gislinge, N., Nielsen, A. J. Z., Olesen, C., Blaise, M., Dorosz, J. J., Thorsen, T. S., Venskutonytė, R., Krintel, C., Møller, J. V., Frielinghaus, H., Gilbert, E. P., Martel, A., Kastrup, J. S. J. & 3 others, Jensen, P. E., Nissen, P. & Arleth, Lise, Jan 2018, In: F E B S Journal. 285, 2, p. 357-371 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Involvement of cytochromes P-450 in the biosynthesis of dhurrin in Sorghum bicolor (L.) Moench

    Halkier, Barbara Ann & Møller, Birger Lindberg, May 1991, In: Plant Physiology. 96, 1, p. 10-17 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Isolate dependency of Brassica rapa resistance QTLs to Botrytis cinerea

    Zhang, W., Kwon, S., Chen, F. & Kliebenstein, D. J., 2016, In: Frontiers in Plant Science. 7, 13 p., 161.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Isolation and structural characterization of echinocystic acid triterpenoid saponins from the Australian medicinal and food plant Acacia ligulata

    Knudsen, D. J., Ndi, C. P., Crocoll, C., Simpson, B. S., Khakimov, Bekzod, Guzman-Genuino, R. M., Hayball, J. D., Xing, X., Bulone, V., Weinstein, P., Møller, Birger Lindberg & Semple, S. J., 2017, In: Journal of Natural Products. 80, 10, p. 2692-2698 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Isolation of plant and recombinant CYP79

    Halkier, Barbara Ann, Sibbesen, O. & Møller, Birger Lindberg, 1996, Methods in Enzymology Cytochrome P450, Part B. Johnson, E. F. & Waterman, M. R. (eds.). Vol. 272. p. 268-274 5 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  12. Published

    Isolation of the heme-thiolate enzyme cytochrome P-450TYR, which catalyzes the committed step in the biosynthesis of the cyanogenic glucoside dhurrin in Sorghum bicolor (L.) Moench

    Sibbesen, O., Koch, B., Halkier, Barbara Ann & Møller, Birger Lindberg, 11 Oct 1994, In: Proceedings of the National Academy of Sciences of the United States of America. 91, 21, p. 9740-9744 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    K+ and Cl− channels/transporters independently fine-tune photosynthesis in plants

    Dukic, E., Herdean, A., Cheregi, O., Sharma, A., Nziengui, H., Dmitruk, D., Solymosi, K., Pribil, Mathias & Spetea, C., 2019, In: Scientific Reports. 9, p. 1-12 8639.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Keeping the rhythm: light/dark cycles during postharvest storage preserve the tissue integrity and nutritional content of leafy plants

    Liu, J. D., Goodspeed, D., Sheng, Z., Li, B., Yang, Y., Kliebenstein, D. J. & Braam, J., 2015, In: B M C Plant Biology. 15, 9 p., 92.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Levanase from Bacillus subtilis hydrolyses β-2,6 fructosyl bonds in bacterial levans and in grass fructans

    Jensen, S. L., Diemer, M. B., Lundmark, M. T., Larsen, F. H., Blennow, Andreas, Mogensen, Helle Kildal & Nielsen, T. H., 2016, In: International Journal of Biological Macromolecules. 85, p. 514-521 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Light affects tissue patterning of the hypocotyl in the shade-avoidance response

    Botterweg-Paredes, E., Blaakmeer, A., Hong, S., Sun, B., Mineri, L., Kruusvee, Valdeko, Xie, Y., Straub, D., Menard, D., Pesquet, E. & Wenkel, Stephan, 2020, In: PLOS Genetics. 16, 3, 22 p., e1008678.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

    Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Light-driven oxidation of polysaccharides by photosynthetic pigments and a metalloenzyme

    Cannella, D., Möllers, K. B., Frigaard, Niels-Ulrik, Jensen, Poul Erik, Bjerrum, Morten Jannik, Johansen, Katja Salomon & Felby, C., 2016, In: Nature Communications. 7, 11134.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Linking chlorophyll biosynthesis to a dynamic plastoquinone pool

    Steccanella, V., Hansson, M. & Jensen, Poul Erik, 2015, In: Plant Physiology and Biochemistry. 97, p. 207-216 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    LncRNA FLAIL affects alternative splicing and represses flowering in Arabidopsis

    Jin, Yu, Ivanov, M., Dittrich, A. N., Nelson, A. D. L. & Marquardt, Sebastian, 2023, In: EMBO Journal. 42, 11, 21 p., e110921.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Localization of the glucosinolate biosynthetic enzymes reveals distinct spatial patterns for the biosynthesis of indole and aliphatic glucosinolates

    Kjeldgaard-Nintemann, Sebastian J, Hunziker, P., Andersen, T. G., Schulz, Alexander, Burow, Meike & Halkier, Barbara Ann, 2018, In: Physiologia Plantarum. 163, 2, p. 138-154 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Loss of a pyridoxal-phosphate phosphatase rescues Arabidopsis lacking an endoplasmic reticulum ATP carrier

    Altensell, J., Wartenberg, R., Haferkamp, I., Hassler, S., Scherer, V., Steensma, P., Fitzpatrick, T. B., Sharma, A., Sandoval-Ibanez, O., Pribil, Mathias, Lehmann, M., Leister, D., Kleine, T. & Neuhaus, H. E., 2022, In: Plant Physiology. 189, 1, p. 49-65 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    LyGo: A Platform for Rapid Screening of Lytic Polysaccharide Monooxygenase Production

    Hernández-rollán, C., Falkenberg, K. B., Rennig, M., Bertelsen, A. B., Ipsen, J. Ø., Brander, Søren, Daley, D. O., Johansen, Katja Salomon & Nørholm, M. H. H., 2021, In: A C S Synthetic Biology. 10, 4, p. 897-906 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Lytic polysaccharide monooxygenases and other histidine-brace copper proteins: structure, oxygen activation and biotechnological applications

    Ipsen, J., Hallas-Møller, Magnus, Brander, Søren, Lo Leggio, Leila & Johansen, Katja Salomon, 2021, In: Biochemical Society Transactions. 49, 1, p. 531-540 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  25. Published

    Macroevolutionary patterns of glucosinolate defense and tests of defense-escalation and resource availability hypotheses

    Cacho, N. I., Kliebenstein, D. J. & Strauss, S. Y., 2015, In: New Phytologist. 208, 3, p. 915-927 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Manganese deficiency in plants: the impact on photosystem II

    Schmidt, Sidsel Birkelund, Jensen, Poul Erik & Husted, Søren, 2016, In: Trends in Plant Science. 21, 7, p. 622-632 11 p.

    Research output: Contribution to journal › Review › Research › peer-review

  27. Published

    Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry Imaging of Metabolites during Sorghum Germination

    Montini, L., Crocoll, C., Gleadow, R. M., Motawia, M. S., Janfelt, Christian & Bjarnholt, Nanna, 2020, In: Plant Physiology. 183, 3, p. 925-942 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Membrane-Bound Protein Scaffolding in Diverse Hosts Using Thylakoid Protein CURT1A

    Behrendorff, J. B. Y. H., Sandoval-Ibañez, O. A., Sharma, A. & Pribil, Mathias, 19 Apr 2019, In: A C S Synthetic Biology. 8, 4, p. 611-620

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Metabolic changes and increased levels of bioactive compounds in white radish (Raphanus sativus L. Cv. 01) sprouts elicited by oligochitosan

    Rakpenthai, A., Khaksar, G., Burow, Meike, Olsen, C. E. & Sirikantaramas, S., 19 Aug 2019, In: Agronomy. 9, 8, p. 1-14 467.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Metabolic engineering of Synechocystis sp. PCC 6803 for the production of aromatic amino acids and derived phenylpropanoids

    Brey, L. F., Włodarczyk, A. J., Bang Thøfner, J. F., Burow, Meike, Crocoll, C., Nielsen, I., Zygadlo Nielsen, A. J. & Jensen, Poul Erik, Jan 2020, In: Metabolic Engineering. 57, p. 129-139

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Metabolic engineering of cyanobacteria for the production of aromatic compounds

    Furelos Brey, L. M., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Metabolic engineering of light-driven cytochrome P450 dependent pathways into Synechocystis sp. PCC 6803

    Wlodarczyk, A. J., Gnanasekaran, Thiyagarajan, Nielsen, A. J. Z., Nokolunga, N., Mellor, Silas Busck, Manja, L., Frederik Bang Thøfner, J., Olsen, C. E., Motawie, Mohammed Saddik, Burow, Meike, Pribil, Mathias, Feussner, I., Møller, Birger Lindberg & Jensen, Poul Erik, 2016, In: Metabolic Engineering. 33, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Metal binding in photosystem II super- and subcomplexes from barley thylakoids

    Schmidt, Sidsel Birkelund, Persson, Daniel Pergament, Powikrowska, M., Frydenvang, Jens, Schjoerring, Jan K., Jensen, Poul Erik & Husted, Søren, 2015, In: Plant Physiology. 168, 4, p. 1490-1502 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Metaproteomics of Freshwater Microbial Communities

    Russo, D. A., Couto, N., Beckerman, A. P. & Pandhal, J., 2019, Mass Spectrometry of Proteins. Springer, Vol. 1977. p. 145-155 11 p. (Methods in molecular biology (Clifton, N.J.)).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  35. Published

    Microbial production of the cancer-preventive glucosinolate Glucoraphanin - Nicotiana benthamiana as tool to alleviate bottle necks in metabolic engineering

    Crocoll, C., Mirza, N. M. A., Reichelt, M. & Halkier, Barbara Ann, 2014, In: Planta Medica. 80, 16, p. 1371-1371

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  36. Published

    Mitochondrial dysfunction induced by variation in the non-coding genome – A proposed workflow to improve diagnostics

    du Mee, D. J. M., Bak, M., Østergaard, Elsebet & Rasmussen, Lene Juel, 2020, In: Mitochondrion. 53, p. 255-259

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Modeling the mechanisms of biological GTP hydrolysis

    Carvalho, A. T. P., Szeler, K., Vavitsas, K., Åqvist, J. & Kamerlin, S. C. L., 2015, In: Archives of Biochemistry and Biophysics. 582, p. 80-90 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Modulating the activities of chloroplasts and mitochondria promotes ATP production and plant growth

    Voon, C. P., Law, Y., Guan, X., Lim, S., Xu, Z., Chu, W., Zhang, R., Sun, F., Labs, M., Pribil, Mathias, Leister, D., Hronková, M., Kubásek, J., Cui, Y., Jiang, L., Tsuyama, M., Gardeström, P., Tikkanen, M. & Lim, B. L., 2021, 27 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  39. Published

    Molecular and physiological aspects of plant peroxidases

    Rasmussen, S. K., 1 Nov 1990, In: Plant Molecular Biology Reporter. 8, 4, p. 313-314 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Molecular mechanisms governing differential robustness of development and environmental responses in plants

    Lachowiec, J., Queitsch, C. & Kliebenstein, D. J., 2016, In: Annals of Botany. 117, 5, p. 795-809 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Molecular rules and functional roles of noncoding transcription

    Gowthaman, U., 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 175 p.

    Research output: Book/Report › Ph.D. thesis › Research

  42. Published

    Multi-Knock—a multi-targeted genome-scale CRISPR toolbox to overcome functional redundancy in plants

    Hu, Y., Patra, P., Pisanty, O., Shafir, A., Belew, Z. M., Binenbaum, J., Ben Yaakov, S., Shi, B., Charrier, L., Hyams, G., Zhang, Y., Trabulsky, M., Caldararu, O., Weiss, D., Crocoll, C., Avni, A., Vernoux, T., Geisler, M., Nour-Eldin, H. H., Mayrose, I. & 1 others, Shani, E., 2023, In: Nature Plants. 9, 4, p. 572-587 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Multiplexed quantification of plant thylakoid proteins on western blots using lanthanide-labeled antibodies and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS)

    de Bang, T. C., Pedas, P., Schjoerring, Jan K., Jensen, Poul Erik & Husted, Søren, 2013, In: Analytical Chemistry. 85, 10, p. 5047-5054 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

    Kindgren, P., Ivanov, M. & Marquardt, Sebastian, 2020, In: Nucleic Acids Symposium Series. 48, 5, p. 2332-2347 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness

    Kerwin, R., Feusier, J., Corwin, J., Rubin, M., Lin, C., Muok, A., Larson, B., Li, B., Joseph, B., Francisco, M., Copeland, D., Weinig, C. & Kliebenstein, D. J., 2015, In: eLife. 4, 28 p., e05604.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Natural variation in cross-talk between glucosinolates and onset of flowering in Arabidopsis

    Jensen, L. M., Jepsen, Henriette Kehlet Sciera, Halkier, Barbara Ann, Kliebenstein, D. J. & Burow, Meike, 2015, In: Frontiers in Plant Science. 6, 10 p., 697.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Natural variation of plant metabolism: genetic mechanisms, interpretive caveats, and evolutionary and mechanistic insights

    Soltis, N. E. & Kliebenstein, D. J., 2015, In: Plant Physiology. 169, 3, p. 1456-1468 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis

    Li, B., Tang, M., Nelson, A., Caligagan, H., Zhou, X., Clark-Wiest, C., Ngo, R., Brady, S. M. & Kliebenstein, D. J., 2018, In: Plant Cell. 30, 1, p. 178-195

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Nitrogen - essential macronutrient and signal controlling flowering time

    Weber, K. & Burow, Meike, 2018, In: Physiologia Plantarum. 162, 2, p. 251-260 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Non-photosynthetic plastids as hosts for metabolic engineering

    Mellor, Silas Busck, Behrendorff, J. B. Y. H., Nielsen, A. J. Z., Jensen, Poul Erik & Pribil, Mathias, 2018, In: Essays in Biochemistry. 62, 1, p. 41-50 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

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