Section for Molecular Plant Biology

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  1. Published

    Characterization of Arabidopsis CYP79C1 and CYP79C2 by Glucosinolate Pathway Engineering in Nicotiana benthamiana Shows Substrate Specificity Toward a Range of Aliphatic and Aromatic Amino Acids

    Wang, Cuiwei, Dissing, M. M., Agerbirk, Niels, Crocoll, C. & Halkier, Barbara Ann, 2020, In: Frontiers in Plant Science. 11, 13 p., 57.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Modulating the activities of chloroplasts and mitochondria promotes ATP production and plant growth

    Voon, C. P., Law, Y., Guan, X., Lim, S., Xu, Z., Chu, W., Zhang, R., Sun, F., Labs, M., Pribil, Mathias, Leister, D., Hronková, M., Kubásek, J., Cui, Y., Jiang, L., Tsuyama, M., Gardeström, P., Tikkanen, M. & Lim, B. L., 2021, 27 p. (bioRxiv).

    Research output: Working paper › Preprint › Research

  3. Published

    CB5C affects the glucosinolate profile in Arabidopsis thaliana

    Vik, D., Crocoll, C., Andersen, T. G., Burow, Meike & Halkier, Barbara Ann, 2016, In: Plant Signalling & Behavior. 11, 8, 6 p., e1160189.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Dynamic Modeling of Indole Glucosinolate Hydrolysis and Its Impact on Auxin Signaling

    Vik, D., Mitarai, Namiko, Wulff, N., Halkier, Barbara Ann & Burow, Meike, 2018, In: Frontiers in Plant Science. 9, 16 p., 550.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Quantitative aspects and dynamic modelling of glucosinolate metabolism

    Vik, D., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  6. Published

    A new versatile microarray-based method for high-throughput screening of carbohydrate-active enzymes

    Vidal Melgosa, S., Pedersen, H. L., Schückel, J., Arnal, G., Dumon, C., Amby, Daniel Buchvaldt, Monrad, R. N., Westereng, B. & Willats, W. G. T., 2015, In: Journal of Biological Chemistry. 290, p. 9020-9036 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The decision to germinate is regulated by divergent molecular networks in spores and seeds

    Vesty, E. F., Saidi, Y., Moody, L. A., Holloway, D., Whitbread, A., Needs, S., Choudhary, A., Burns, B., McLeod, D., Bradshaw, S. J., Bae, H., King, B. C., Bassel, G. W., Simonsen, H. T. & Coates, J. C., 2016, In: New Phytologist. 211, 3, p. 952-966 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Responses of Synechocystis sp. PCC 6803 to heterologous biosynthetic pathways

    Vavitsas, K., Rue, E. Ø., Stefánsdóttir, L. K., Gnanasekaran, Thiyagarajan, Blennow, Andreas, Crocoll, C., Gudmundsson, S. & Jensen, Poul Erik, 2017, In: Microbial Cell Factories. 16, 1, 11 p., 140.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Photosynthetic production of diterpenoids in chloroplasts and cyanobacteria

    Vavitsas, K., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  10. Published

    Effect of alkaline treatment on bacteriochlorophyll a, quinones and energy transfer in chlorosomes from Chlorobium tepidum and Chlorobium phaeobacteroides

    Van Walree, C. A., Sakuragi, Y., Steensgaard, D. B., Bösinger, C. S., Frigaard, Niels-Ulrik, Cox, R. P., Holzwart, A. R. & Miller, M., 1 Jan 1999, In: Photochemistry and Photobiology. 69, 3, p. 322-328 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    PSC-db: A Structured and Searchable 3D-Database for Plant Secondary Compounds

    Valdes-Jimenez, A., Pena-Varas, C., Borrego-Munoz, P., Arrue, L., Alegria-Arcos, M., Nour-Eldin, Hussam Hassan, Dreyer, I., Nunez-Vivanco, G. & Ramirez, D., 2021, In: Molecules. 26, 4, 10 p., 1124.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    The Role of Phosphorylation Dynamics of CURVATURE THYLAKOID 1B in Plant Thylakoid Membranes

    Trotta, A., Bajwa, A. A., Mancini, I., Paakkarinen, V., Pribil, Mathias & Aro, E. M., Dec 2019, In: Plant Physiology. 181, 4, p. 1615-1631

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Comparison of pharmacokinetic study profiles of insulin in rat plasma through conventional sampling and microsampling by micro-LC-MS/MS

    Troché, Gaudry Bruno, Søeborg, T., Bödvarsdottir, T. B., Bjelke, M. & Nielsen, Nikoline Juul, 2023, In: Bioanalysis. 15, 5, p. 283-294 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Inhibition of lytic polysaccharide monooxygenase by natural plant extracts

    Tokin, Radina, Frandsen, Kristian Erik Høpfner, Ipsen, J. Ø., Lo Leggio, Leila, Poojary, Mahesha Manjunatha, Berrin, J., Grisel, S., Brander, Søren, Jensen, Poul Erik & Johansen, Katja Salomon, 2021, In: New Phytologist. 232, 3, p. 1337–1349 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Inhibition of Lytic Polysaccharide Monooxygenases by Plant Extracts

    Tokin, Radina, 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Inhibition of lpmos by fermented persimmon juice

    Tokin, Radina, Ipsen, J. Ø., Poojary, Mahesha Manjunatha, Jensen, Poul Erik, Olsson, L. & Johansen, Katja Salomon, 2021, In: Biomolecules. 11, 12, 12 p., 1890.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    The synergy between LPMOs and cellulases in enzymatic saccharification of cellulose is both enzyme- and substrate-dependent

    Tokin, Radina, Ipsen, J. Ø., Westh, P. & Johansen, Katja Salomon, 1 Oct 2020, In: Biotechnology Letters. 42, 10, p. 1975-1984 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Identification and characterisation of two high-affinity glucose transporters from the spoilage yeast Brettanomyces bruxellensis

    Tiukova, I. A., Møller-Hansen, I., Belew, Zeinu Mussa, Darbani, B., Boles, E., Nour-Eldin, Hussam Hassan, Linder, T., Nielsen, J. & Borodina, I., 1 Sep 2019, In: FEMS Microbiology Letters. 366, 17, p. 1-9 fnz222.

    Research output: Contribution to journal › Letter › Research › peer-review

  19. Published

    cDNA cloning and characterization of two barley peroxidase transcripts induced differentially by the powdery mildew fungus Erysiphe graminis

    Thordal-Christensen, Hans, Brandt, J., Cho, B. H., Rasmussen, S. K., Gregersen, P. L., Smedegaard-Petersen, V. & Collinge, David B., 1 Jan 1992, In: Physiological and Molecular Plant Pathology. 40, 6, p. 395-409 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis

    Thomas, Quentin, Ard, R., Liu, J., Li, B., Wang, J., Pelechano, V. & Marquardt, Sebastian, 2020, In: Nature Communications. 11, 1, p. 1-15

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A flavin-dependent monooxygenase catalyzes the initial step in cyanogenic glycoside synthesis in ferns

    Thodberg, S., Sørensen, Mette, Bellucci, M., Crocoll, C., Bendtsen, Amalie Kofoed, Nelson, D. R., Motawie, Mohammed Saddik, Møller, Birger Lindberg & Neilson, Elizabeth Heather Jakobsen, 2020, In: Communications Biology . 3, 11 p., 507.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The γ-hydroxybutyric acid (GHB) analogue NCS-382 is a substrate for both monocarboxylate transporters subtypes 1 and 4

    Thiesen, L., Belew, Zeinu Mussa, Griem-Krey, Nane, Pedersen, Stine Helene Falsig, Crocoll, C., Nour-Eldin, Hussam Hassan & Wellendorph, Petrine, 15 Feb 2020, In: European Journal of Pharmaceutical Sciences. 143, p. 1-9 105203.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways

    Thieffry, A., Vigh, Maria Louisa, Lange, Jette Bornholdt, Ivanov, M., Brodersen, Peter & Sandelin, Albin Gustav, 2020, In: The Plant Cell. 32, 6, p. 1845-1867 23 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Structure and chromosomal localization of the gene encoding barley seed peroxidase BP 2A

    Theilade, B. & Rasmussen, S. K., 10 Sep 1992, In: Gene. 118, 2, p. 261-266 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Production of polyhydroxybutyrate in wood-ljungdahl microorganisms

    Tappel, R., Behrendorff, J. B. Y. H., Koepke, M., Marcellin, E., Lemgruber, R. D. S. P., Valgepea, K. & Nielsen, L. K., 25 Apr 2019, IPC No. C12P7/625, Lanzatech, Inc., Patent No. US20190119706A1, Priority date 4 Oct 2017, Priority No. US201762568127P

    Research output: Patent

  26. Published

    A genome-scale TF–DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism

    Tang, M., Li, B., Zhou, X., Bolt, T., Li, J. J., Cruz, N., Gaudinier, A., Ngo, R., Clark-Wiest, C., Kliebenstein, D. J. & Brady, S. M., 2021, In: Molecular Systems Biology. 17, 11, 19 p., e10625.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    High throughput screening of starch structures using carbohydrate microarrays

    Tanackovic, V., Rydahl, M. G., Pedersen, H. L., Motawie, Mohammed Saddik, Shaik, S. S., Mikkelsen, M. D., Jensen, S. L., Fangel, J. U., Willats, W. G. T. & Blennow, Andreas, 2016, In: Scientific Reports. 6, 9 p., 30551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    The Arabidopsis NPF3 protein is a GA transporter

    Tal, I., Zhang, Y., Jørgensen, M. E., Pisanty, O., Barbosa, I. C. R., Zourelidou, M., Regnault, T., Crocoll, C., Olsen, C. E., Weinstain, R., Schwechheimer, C., Halkier, Barbara Ann, Nour-Eldin, Hussam Hassan, Estelle, M. & Shani, E., 2016, In: Nature Communications. 7, 20 p., 11486.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    The P5A ATPase Spf1p is stimulated by phosphatidylinositol 4-phosphate and influences cellular sterol homeostasis

    Sørensen, D. M., Holen, H. W., Pedersen, J. T., Martens, Helle Jakobe, Silvestro, D., Stanchev, L. D., Costa, S. R., Pomorski, Thomas Guenther, Lopez Marques, Rosa Laura & Palmgren, Michael, 15 Apr 2019, In: Molecular Biology of the Cell. 30, 9, p. 1069-1084

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A revision of the history of the Colletotrichum acutatum species complex in the Nordic countries based on herbarium specimens.

    Sundelin, T., Strømeng, G. M., Gjærum, H. B., Amby, Daniel Buchvaldt, Ørstad, K., Jensen, Birgit, Lund, O. S. & Stensvand, A., 2015, In: F E M S Microbiology Letters. 362, 7 p., fnv130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Dissection of microProtein Signaling in Plant Development

    Sun, B., 2020, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 179 p.

    Research output: Book/Report › Ph.D. thesis › Research

  33. Published

    FIONA1-mediated methylation of the 3'UTR of FLC affects FLC transcript levels and flowering in Arabidopsis

    Sun, B., Bhati, K. K., Song, P., Edwards, Ashleigh Katrina, Petri, Louise, Kruusvee, Valdeko, Blaakmeer, A., Dolde, U., Rodrigues, V., Straub, D., Yang, J., Jia, G. & Wenkel, Stephan, 2022, In: PLOS Genetics. 18, 9, 22 p., e1010386.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    CASCADE, a platform for controlled gene amplification for high, tunable and selection-free gene expression in yeast

    Strucko, T., Buron, L. D., Jarczynska, Z. D., Nødvig, C. S., Mølgaard, L., Halkier, Barbara Ann & Mortensen, U. H., 2017, In: Scientific Reports. 7, 12 p., 41431.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Understanding the Biological Roles of Pectins in Plants through Physiological and Functional Characterizations of Plant and Fungal Mutants

    Stranne, M., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 233 p.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    Arabinan: Biosynthesis and a Role in Host-Pathogen Interactions

    Stranne, M. & Sakuragi, Y., 2016, Plant Pathogen Resistance Biotechnology. Collinge, D. B. (ed.). Wiley-Blackwell, p. 91-107 17 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    TBL10 is required for O-acetylation of pectic rhamnogalacturonan-I in Arabidopsis thaliana

    Stranne, M., Ren, Y., Fimognari, L., Birdseye, D., Yan, J., Bardor, M., Mollet, J., Komatsu, T., Kikuchi, J., Scheller, H. V. & Sakuragi, Y., 2018, In: Plant Journal. 96, 4, p. 772-785

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Harnessing transcription for bioproduction in cyanobacteria

    Stensjö, K., Vavitsas, K. & Tyystjärvi, T., 2018, In: Physiologia Plantarum. 162, 2, p. 148-155 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Linking chlorophyll biosynthesis to a dynamic plastoquinone pool

    Steccanella, V., Hansson, M. & Jensen, Poul Erik, 2015, In: Plant Physiology and Biochemistry. 97, p. 207-216 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Chloroplast Redox Poise: The Role of Plastoquinone Pool and Redox-Sensitive Proteins

    Steccanella, V., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 126 p.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    Functional Significance of Conserved Cysteines in the Extracellular Loops of the ATP Binding Cassette Transporter Pdr11p

    Stanchev, L. D., Marek, M., Xian, F., Klöhn, M., Silvestro, D., Dittmar, G., Lopez Marques, Rosa Laura & Pomorski, Thomas Guenther, 2021, In: Journal of Fungi. 7, 1, 16 p., 2.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    An improved ARS2-derived nuclear reporter enhances the efficiency and ease of genetic engineering in Chlamydomonas

    Specht, E. A., Nour-Eldin, Hussam Hassan, Hoang, K. T. D. & Mayfield, S. P., 2015, In: Biotechnology Journal. 10, 3, p. 473-479 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Contrasting effects of long-term fertilization on the community of saprotrophic fungi and arbuscular mycorrhizal fungi in a sandy loam soil

    Song, G., Chen, R., Xiang, W., Yang, F., Zheng, S., Zhang, J., Zhang, J. & Lin, X., 2015, In: Plant, Soil and Environment. 61, 3, p. 127-136 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Natural variation of plant metabolism: genetic mechanisms, interpretive caveats, and evolutionary and mechanistic insights

    Soltis, N. E. & Kliebenstein, D. J., 2015, In: Plant Physiology. 169, 3, p. 1456-1468 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Interactions of Tomato and Botrytis cinerea Genetic Diversity: Parsing the Contributions of Host Differentiation, Domestication, and Pathogen Variation

    Soltis, N. E., Atwell, S., Shi, G., Fordyce, R., Gwinner, R., Gao, D., Shafi, A. & Kliebenstein, D. J., 2019, In: Plant Cell. 31, 2, p. 502-519

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Pathogen Genetic Control of Transcriptome Variation in the Arabidopsis thaliana – Botrytis cinerea Pathosystem

    Soltis, N. E., Caseys, C., Zhang, W., Corwin, J. A., Atwell, S. & Kliebenstein, D. J., 2020, In: Genetics. 215, 1, p. 253-266

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    mGWAS Uncovers Gln-Glucosinolate Seed-Specific Interaction and its Role in Metabolic Homeostasis

    Slaten, M. L., Yobi, A., Bagaza, C., Chan, Y. O., Shrestha, V., Holden, S., Katz, E., Kanstrup, Christa, Lipka, A. E., Kliebenstein, D. J., Nour-Eldin, Hussam Hassan & Angelovici, R., 2020, In: Plant Physiology. 183, 2, p. 483-500 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    The role of cysteine residues in redox regulation and protein stability of Arabidopsis thaliana starch synthase 1

    Skryhan, K., Cuesta-Seijo, J. A., Nielsen, M. M., Marri, L., Mellor, Silas Busck, Glaring, M. A., Jensen, Poul Erik, Palcic, M. M. & Blennow, Andreas, 2015, In: PLOS ONE. 10, 9, p. e0136997

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Detection and characterization of a novel copper-dependent intermediate in a lytic polysaccharide monooxygenase

    Singh, R. K., Möllers Blossom, B., Russo, D. A., Singh, R., Weihe, Høgni, Andersen, N. H., Tiwari, M. K., Jensen, Poul Erik, Felby, C. & Bjerrum, Morten Jannik, 2020, In: Chemistry - A European Journal. 26, 2, p. 454-463 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Thermal unfolding and refolding of a lytic polysaccharide monooxygenase from Thermoascus aurantiacus

    Singh, R. K., Blossom, B. M., Russo, D. A., van Oort, B., Croce, R., Jensen, P. E., Felby, C. & Bjerrum, Morten Jannik, 2019, In: R S C Advances. 9, 9 p., 29734.

    Research output: Contribution to journal › Journal article › Research › peer-review

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