Section for Molecular Plant Biology

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  1. 2022
  2. Published

    The emerging role of the nitrate and peptide transporter family: NPF in plant specialized metabolism

    Kanstrup, Christa & Nour-Eldin, Hussam Hassan, 2022, In: Current Opinion in Plant Biology. 68, 10 p., 102243.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Genetic variation underlying differential ammonium and nitrate responses in Arabidopsis thaliana

    Katz, E., Knapp, A., Lensink, M., Keller, C. K., Stefani, J., Li, J., Shane, E., Tuermer-Lee, K., Bloom, A. J. & Kliebenstein, D. J., 2022, In: The Plant Cell. 34, 12, p. 4696-4713

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana

    Krahmer, J., Hindle, M., Perby, L. K., Mogensen, Helle Kildal, Nielsen, T. H., Halliday, K. J., van Ooijen, G., Le Bihan, T. & Millar, A. J., 2022, In: Molecular and Cellular Proteomics. 21, 1, 20 p., 100172.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    The ease and complexity of identifying and using specialized metabolites for crop engineering

    Muhich, A. J., Agosto-Ramos, A. & Kliebenstein, D. J., 2022, In: Emerging topics in life sciences. 6, p. 153-162 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    Cytosolic phosphofructokinases are important for sugar homeostasis in leaves of Arabidopsis thaliana

    Perby, L. K., Richter, S., Weber, K., Hieber, A. J., Hess, N., Crocoll, C., Mogensen, Helle Kildal, Pribil, Mathias, Burow, Meike, Nielsen, T. H. & Mustroph, A., 2022, In: Annals of Botany. 129, 1, p. 37-52

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Structural Insights into the Substrate Transport Mechanisms in GTR Transporters through Ensemble Docking

    Peña‐Varas, C., Kanstrup, Christa, Vergara‐jaque, A., González‐avendaño, M., Crocoll, C., Mirza, Osman Asghar, Dreyer, I., Nour-Eldin, Hussam Hassan & Ramírez, D., 2022, In: International Journal of Molecular Sciences. 23, 3, 20 p., 1595.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Engineering Escherichia coli towards production of plant specialized metabolites

    Poborsky, Michal, 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 129 p.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    A fungal lytic polysaccharide monooxygenase is required for cell wall integrity, thermotolerance, and virulence of the fungal human pathogen Cryptococcus neoformans

    Probst, C., Hallas-Møller, Magnus, Ipsen, J. Ø., Brooks, J. T., Andersen, Karsten Wiberg, Haon, M., Berrin, J., Martens, Helle Jakobe, Nichols, C. B., Johansen, Katja Salomon & Alspaugh, J. A., 2022, bioRxiv, 70 p.

    Research output: Working paper › Preprint › Research

  10. Published

    Identification of new proteins in mature sieve elements

    Sanden, Niels Christian Holm & Schulz, Alexander, 2022, In: Physiologia Plantarum. 174, 1, e13634.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Prospects to improve the nutritional quality of crops. Food and Energy Security

    Scharff, L., Saltenis, V. L. R., Jensen, P. E., Baekelandt, A., Burgess, A. J., Burow, M., Ceriotti, A., Cohan, J-P., Geu-Flores, F., Halkier, B. A., Haslam, R. P., Inzé, D., Lankhorst, R. K., Murchie, E., Napier, J. A., Nacry, P., Parry, M. A. J., Santino, A., Scarano, A., Sparvoli, F. & 2 others, Wilhelm, R. & Pribil, Mathias, 2022, In: Food and Energy Security. 11, 1, 14 p., e327.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    FIONA1-mediated methylation of the 3'UTR of FLC affects FLC transcript levels and flowering in Arabidopsis

    Sun, B., Bhati, K. K., Song, P., Edwards, Ashleigh Katrina, Petri, Louise, Kruusvee, Valdeko, Blaakmeer, A., Dolde, U., Rodrigues, V., Straub, D., Yang, J., Jia, G. & Wenkel, Stephan, 2022, In: PLOS Genetics. 18, 9, 22 p., e1010386.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Comparison of Genome and Plasmid-Based Engineering of Multigene Benzylglucosinolate Pathway in Saccharomyces cerevisiae

    Wang, Cuiwei, Poborsky, Michal, Crocoll, C., Nødvig, C. S., Mortensen, U. H. & Halkier, Barbara Ann, 2022, In: Applied and Environmental Microbiology. 88, 22, 15 p., e00978-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Harnessing beneficial microbes from Danish natural soils to biostimulate plant nutrition

    Xu, Deyang, Dethier, L. & Halkier, Barbara Ann, 13 Nov 2022.

    Research output: Contribution to conference › Conference abstract for conference › Research

  15. Published

    The ins and outs of transporters at plasma membrane and tonoplast in plant specialized metabolism: [Correction]

    Xu, Deyang & Halkier, Barbara Ann, 2022, In: Natural Product Reports. 39, 7, p. 1483-1491

    Research output: Contribution to journal › Review › Research › peer-review

  16. Published

    Parasitic plant small RNA analyses unveil parasite-specific signatures of microRNA retention, loss, and gain

    Zangishei, Z., Annacondia López, María Luz, Gundlach, H., Didriksen, A., Bruckmüller, J., Salari, H., Krause, K. & Martinez, G., 2022, In: Plant Physiology. 190, 2, p. 1242-1259

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis

    Zhong, Z., Wang, Y., Wang, M., Yang, F., Thomas, Quentin, Xue, Y., Zhang, Y., Liu, W., Jami-Alahmadi, Y., Xu, L., Feng, S., Marquardt, Sebastian, Wohlschlegel, J. A., Ausin, I. & Jacobsen, S. E., 2022, In: Nature Communications. 13, 15 p., 6970.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    The biological function and regulation of non-coding transcription originating from bi-directional promoters

    du Mee, D. J. M., 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 170 p.

    Research output: Book/Report › Ph.D. thesis › Research

  19. 2021
  20. Published

    VC1 catalyses a key step in the biosynthesis of vicine in faba bean

    Björnsdotter, E., Nadzieja, M., Chang, W., Escobar-Herrera, L., Mancinotti, Davide, Angra, D., Xia, Xinxing, Tacke, R., Khazaei, H., Crocoll, C., Vandenberg, A., Link, W., Stoddard, F. L., O'Sullivan, D. M., Stougaard, J., Schulman, A. H., Andersen, S. U. & Geu-Flores, Fernando, 2021, In: Nature Plants. 7, p. 923–931

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Colorimetric LPMO assay with direct implication for cellulolytic activity

    Brander, Søren, Lausten, S., Ipsen, J., Falkenberg, K. B., Bertelsen, A. B., Nørholm, M. H. H., Østergaard, L. H. & Johansen, Katja Salomon, 2021, In: Biotechnology for Biofuels. 14, 1, 13 p., 51.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Scission of Glucosidic Bonds by a Lentinus similis Lytic Polysaccharide Monooxygenases Is Strictly Dependent on H2O2while the Oxidation of Saccharide Products Depends on O2

    Brander, Søren, Tokin, Radina, Ipsen, J., Jensen, Poul Erik, Hernández-Rollán, C., Nørholm, M. H. H., Lo Leggio, Leila, Dupree, P. & Johansen, Katja Salomon, 2021, In: ACS Catalysis. 11, 22, p. 13848-13859

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A Novel CYP2C-Haplotype Associated With Ultrarapid Metabolism of Escitalopram

    Bråten, L. S., Haslemo, T., Jukic, M. M., Ivanov, M., Ingelman-Sundberg, M., Molden, E. & Kringen, M. K., 2021, In: Clinical Pharmacology and Therapeutics. 110, 3, p. 786-793

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Induction and Priming of Plant Defense by Root-Associated Insect-Pathogenic Fungi

    Cachapa, J. C., Meyling, Nicolai Vitt, Burow, Meike & Hauser, T. P., 2021, In: Journal of Chemical Ecology. 47, p. 112-122 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Genome size evolution is associated with climate seasonality and glucosinolates, but not life history, soil nutrients or range size, across a clade of mustards

    Cacho, N. I., McIntyre, P. J., Kliebenstein, D. J. & Strauss, S. Y., 2021, In: Annals of Botany. 127, 7, p. 887-902 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Quantitative interactions: The disease outcome of Botrytis cinerea across the plant kingdom

    Caseys, C., Shi, G., Soltis, N., Gwinner, R., Corwin, J., Atwell, S. & Kliebenstein, D. J., 2021, In: G3: Genes, Genomes, Genetics. 11, 8, 15 p., jkab175.

    Research output: Contribution to journal › Review › Research › peer-review

  27. Published

    Arabidopsis thaliana transcription factors MYB28 and MYB29 shape ammonium stress responses by regulating Fe homeostasis

    Coleto, I., Bejarano, I., Marin-Pena, A. J., Medina, J., Rioja, C., Burow, Meike & Marino, D., 2021, In: New Phytologist. 229, 2, p. 1021-1035 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Biotechnology for Tomorrow's World: Scenarios to Guide Directions for Future Innovation

    Cornelissen, M., Małyska, A., Nanda, A. K., Lankhorst, R. K., Parry, M. A. J., Saltenis, Vandasue, Pribil, Mathias, Nacry, P., Inzé, D. & Baekelandt, A., 2021, In: Trends in Biotechnology. 39, 5, p. 438-444

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Specialized metabolites and valuable molecules in crop and medicinal plants: The evolution of their use and strategies for their production

    D’Amelia, V., Docimo, T., Crocoll, C. & Rigano, M. M., 2021, In: Genes. 12, 6, 20 p., 936.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Fine mapping identifies NAD-ME1 as a candidate underlying a major locus controlling temporal variation in primary and specialized metabolism in Arabidopsis

    Francisco, M., Kliebenstein, D. J., Rodríguez, V. M., Soengas, P., Abilleira, R. & Cartea, M. E., 2021, In: Plant Journal. 106, 2, p. 454-467

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana

    Gawroński, P., Burdiak, P., Scharff, L. B., Mielecki, J., Górecka, M., Zaborowska, M., Leister, D., Waszczak, C. & Karpiński, S., 2021, In: Plant Journal. 105, 3, p. 619-638

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

    Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Bioengineering potato plants to produce benzylglucosinolate for improved broad-spectrum pest and disease resistance

    González-Romero, M. E., Rivera, C., Cancino, K., Geu-Flores, Fernando, Cosio, E. G., Ghislain, M. & Halkier, Barbara Ann, 2021, In: Transgenic Research. 30, p. 649-660 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Molecular rules and functional roles of noncoding transcription

    Gowthaman, U., 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 175 p.

    Research output: Book/Report › Ph.D. thesis › Research

  35. Published

    The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency

    Gowthaman, U., Ivanov, M., Schwarz, Isabel Aimèe, Patel, H. P., Müller, N. A., Garcia Pichardo, Desire, Lenstra, T. L. & Marquardt, Sebastian, 2021, In: EMBO Journal. 40, 23, 16 p., 108903.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Root-type ferredoxin-NADP+ oxidoreductase isoforms in Arabidopsis thaliana: Expression patterns, location and stress responses

    Grabsztunowicz, M., Rantala, M., Ivanauskaite, A., Blomster, T., Koskela, M. M., Vuorinen, K., Tyystjarvi, E., Burow, Meike, Overmyer, K., Mahonen, A. P. & Mulo, P., 2021, In: Plant, Cell and Environment. 44, 2, p. 548-558 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    LyGo: A Platform for Rapid Screening of Lytic Polysaccharide Monooxygenase Production

    Hernández-rollán, C., Falkenberg, K. B., Rennig, M., Bertelsen, A. B., Ipsen, J. Ø., Brander, Søren, Daley, D. O., Johansen, Katja Salomon & Nørholm, M. H. H., 2021, In: A C S Synthetic Biology. 10, 4, p. 897-906 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Herbivore feeding preference corroborates optimal defense theory for specialized metabolites within plants

    Hunziker, P., Lambertz, S. K., Weber, K., Crocoll, C., Halkier, Barbara Ann & Schulz, Alexander, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 47, e2111977118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Lytic polysaccharide monooxygenases and other histidine-brace copper proteins: structure, oxygen activation and biotechnological applications

    Ipsen, J., Hallas-Møller, Magnus, Brander, Søren, Lo Leggio, Leila & Johansen, Katja Salomon, 2021, In: Biochemical Society Transactions. 49, 1, p. 531-540 10 p.

    Research output: Contribution to journal › Review › Research › peer-review

  40. Published

    Copper binding and reactivity at the histidine brace motif: insights from mutational analysis of the Pseudomonas fluorescens copper chaperone CopC

    Ipsen, J. Ø., Hernández‐Rollán, C., Muderspach, Sebastian Jannick, Brander, Søren, Bertelsen, A. B., Jensen, Poul Erik, Nørholm, M. H. H., Lo Leggio, Leila, Johansen, Katja Salomon & Ferguson, S. (ed.), 2021, In: FEBS Letters. 595, 12, p. 1708-1720 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    On the Histidine Brace in Redox Enzymes and Chaperones

    Ipsen, J. Ø., 2021, Department of Geosciences and Natural Resource Management, Faculty of Science, University of Copenhagen. 209 p.

    Research output: Book/Report › Ph.D. thesis › Research

  42. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, M., Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Winter fields antisense RNAs to kick off flowering

    Jin, Yu & Marquardt, Sebastian, 2021, In: Genes and Development. 38, 11-12, p. 785-786 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe

    Katz, E., Li, J. J., Jaegle, B., Ashkenazy, H., Abrahams, S. R., Bagaza, C., Holden, S., Pires, C. J., Angelovici, R. & Kliebenstein, D. J., 2021, In: eLife. 10, 25 p., e67784.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness

    Kazachkova, Y., Zemach, I., Panda, S., Bocobza, S., Vainer, A., Rogachev, I., Dong, Y., Ben-Dor, S., Veres, D., Kanstrup, Christa, Lambertz, S. K., Crocoll, C., Hu, Y., Shani, E., Michaeli, S., Nour-Eldin, Hussam Hassan, Zamir, D. & Aharoni, A., 2021, In: Nature Plants. 7, p. 468-480

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase

    Krause, S. T., Liao, P., Crocoll, C., Boachon, B., Foerster, C., Leidecker, F., Wiese, N., Zhao, D., Wood, J. C., Buell, C. R., Gershenzon, J., Dudareva, N. & Degenhardt, J., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 10 p., e2110092118.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A study of the spatial distribution patterns of airborne polycyclic aromatic hydrocarbons in crowberry (Empetrum nigrum) in Ilulissat, Greenland

    Kronik, Oskar Munk, Prothmann, J., Troché, Gaudry Bruno, Svensmark, Bo, Nielsen, Nikoline Juul & Christensen, Jan H., 2021, In: Environmental Science and Pollution Research. 28, p. 23133-23142

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Ancient origin of fucosylated xyloglucan in charophycean green algae

    Mikkelsen, M. D., Harholt, J., Westereng, B., Domozych, D., Fry, S. C., Johansen, I. E., Fangel, J. U., Łężyk, M., Feng, T., Nancke, L., Mikkelsen, J. D., Willats, W. G. T. & Ulvskov, Peter, 2021, In: Communications Biology . 4, 12 p., 754.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Evolution of A bHLH Interaction Motif

    Millard, P. S., Kragelund, Birthe Brandt & Burow, Meike, 2021, In: International Journal of Molecular Sciences. 22, 1, 18 p., 447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    PTR2/POT/NPF transporters: what makes them tick?

    Prabhala, B. K., Rahman, M., Nour-Eldin, Hussam Hassan, Jørgensen, Flemming Steen & Mirza, Osman Asghar, 2021, In: Advances in Protein Chemistry and Structural Biology. 123, p. 219-240 22 p.

    Research output: Contribution to journal › Review › Research › peer-review

  51. Published

    A microProtein repressor complex in the shoot meristem controls the transition to flowering

    Rodrigues, V. L., Dolde, U., Sun, B., Blaakmeer, A., Straub, D., Eguen, T., Botterweg-Paredes, E., Hong, S., Graeff, M., Li, M. W., Gendron, J. M. & Wenkel, Stephan, 2021, In: Plant Physiology. 187, 1, p. 187-202 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Stationary sieve element proteins

    Sanden, Niels Christian Holm & Schulz, Alexander, 2021, In: Journal of Plant Physiology. 266, 10 p., 153511.

    Research output: Contribution to journal › Review › Research › peer-review

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