Section for Molecular Plant Biology

  1. 2021
  2. Published

    Curvature thylakoid 1 proteins modulate prolamellar body morphology and promote organized thylakoid biogenesis in Arabidopsis thaliana

    Sandoval-Ibáñez, O., Sharma, A., Bykowski, M., Borràs-Gas, G., Behrendorff, J. B. Y. H., Mellor, Silas Busck, Qvortrup, Klaus, Verdonk, J. C., Bock, R., Kowalewska, Ł. & Pribil, Mathias, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 42, 10 p., e2113934118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  3. Published

    Engineering and optimization of the 2-phenylethylglucosinolate production in Nicotiana benthamiana by combining biosynthetic genes from Barbarea vulgaris and Arabidopsis thaliana

    Wang, Cuiwei, Crocoll, C., Agerbirk, Niels & Halkier, Barbara Ann, 2021, In: Plant Journal. 106, 4, p. 978-992

    Research output: Contribution to journalJournal articleResearchpeer-review

  4. Published

    Evolution of A bHLH Interaction Motif

    Millard, P. S., Kragelund, Birthe Brandt & Burow, Meike, 2021, In: International Journal of Molecular Sciences. 22, 1, 18 p., 447.

    Research output: Contribution to journalJournal articleResearchpeer-review

  5. Published

    Fine mapping identifies NAD-ME1 as a candidate underlying a major locus controlling temporal variation in primary and specialized metabolism in Arabidopsis

    Francisco, M., Kliebenstein, D. J., Rodríguez, V. M., Soengas, P., Abilleira, R. & Cartea, M. E., 2021, In: Plant Journal. 106, 2, p. 454-467

    Research output: Contribution to journalJournal articleResearchpeer-review

  6. Published

    From Single Cells to Flowers – Biological Complexity Driving Plant Reproductive Development

    Schwarz, Isabel Aimèe, Neumann, M., Vega, R., Xu, X., Cornaro, L., Colombo, L., Vernoux, T., Xu, J., Marquardt, Sebastian & Kaufmann, K., 2021, Preprints.org.

    Research output: Working paperPreprintResearch

  7. Published

    Functional Significance of Conserved Cysteines in the Extracellular Loops of the ATP Binding Cassette Transporter Pdr11p

    Stanchev, L. D., Marek, M., Xian, F., Klöhn, M., Silvestro, D., Dittmar, G., Lopez Marques, Rosa Laura & Pomorski, Thomas Guenther, 2021, In: Journal of Fungi. 7, 1, 16 p., 2.

    Research output: Contribution to journalJournal articleResearchpeer-review

  8. Published

    Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe

    Katz, E., Li, J. J., Jaegle, B., Ashkenazy, H., Abrahams, S. R., Bagaza, C., Holden, S., Pires, C. J., Angelovici, R. & Kliebenstein, D. J., 2021, In: eLife. 10, 25 p., e67784.

    Research output: Contribution to journalJournal articleResearchpeer-review

  9. Published

    Genome size evolution is associated with climate seasonality and glucosinolates, but not life history, soil nutrients or range size, across a clade of mustards

    Cacho, N. I., McIntyre, P. J., Kliebenstein, D. J. & Strauss, S. Y., 2021, In: Annals of Botany. 127, 7, p. 887-902 16 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  10. Published

    Herbivore feeding preference corroborates optimal defense theory for specialized metabolites within plants

    Hunziker, P., Lambertz, S. K., Weber, K., Crocoll, C., Halkier, Barbara Ann & Schulz, Alexander, 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 47, e2111977118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  11. Published

    Induction and Priming of Plant Defense by Root-Associated Insect-Pathogenic Fungi

    Cachapa, J. C., Meyling, Nicolai Vitt, Burow, Meike & Hauser, T. P., 2021, In: Journal of Chemical Ecology. 47, p. 112-122 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  12. Published

    Inhibition of Lytic Polysaccharide Monooxygenases by Plant Extracts

    Tokin, Radina, 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 156 p.

    Research output: Book/ReportPh.D. thesisResearch

  13. Published

    Inhibition of lpmos by fermented persimmon juice

    Tokin, Radina, Ipsen, J. Ø., Poojary, Mahesha Manjunatha, Jensen, Poul Erik, Olsson, L. & Johansen, Katja Salomon, 2021, In: Biomolecules. 11, 12, 12 p., 1890.

    Research output: Contribution to journalJournal articleResearchpeer-review

  14. Published

    Inhibition of lytic polysaccharide monooxygenase by natural plant extracts

    Tokin, Radina, Frandsen, Kristian Erik Høpfner, Ipsen, J. Ø., Lo Leggio, Leila, Poojary, Mahesha Manjunatha, Berrin, J., Grisel, S., Brander, Søren, Jensen, Poul Erik & Johansen, Katja Salomon, 2021, In: New Phytologist. 232, 3, p. 1337–1349 13 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  15. Published

    Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

    Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.

    Research output: Contribution to journalJournal articleResearchpeer-review

  16. Published

    LyGo: A Platform for Rapid Screening of Lytic Polysaccharide Monooxygenase Production

    Hernández-rollán, C., Falkenberg, K. B., Rennig, M., Bertelsen, A. B., Ipsen, J. Ø., Brander, Søren, Daley, D. O., Johansen, Katja Salomon & Nørholm, M. H. H., 2021, In: A C S Synthetic Biology. 10, 4, p. 897-906 10 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  17. Published

    Lytic polysaccharide monooxygenases and other histidine-brace copper proteins: structure, oxygen activation and biotechnological applications

    Ipsen, J., Hallas-Møller, Magnus, Brander, Søren, Lo Leggio, Leila & Johansen, Katja Salomon, 2021, In: Biochemical Society Transactions. 49, 1, p. 531-540 10 p.

    Research output: Contribution to journalReviewResearchpeer-review

  18. Published

    Modulating the activities of chloroplasts and mitochondria promotes ATP production and plant growth

    Voon, C. P., Law, Y., Guan, X., Lim, S., Xu, Z., Chu, W., Zhang, R., Sun, F., Labs, M., Pribil, Mathias, Leister, D., Hronková, M., Kubásek, J., Cui, Y., Jiang, L., Tsuyama, M., Gardeström, P., Tikkanen, M. & Lim, B. L., 2021, 27 p. (bioRxiv).

    Research output: Working paperPreprintResearch

  19. Published

    Molecular rules and functional roles of noncoding transcription

    Gowthaman, U., 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 175 p.

    Research output: Book/ReportPh.D. thesisResearch

  20. Published

    On the Histidine Brace in Redox Enzymes and Chaperones

    Ipsen, J. Ø., 2021, Department of Geosciences and Natural Resource Management, Faculty of Science, University of Copenhagen. 209 p.

    Research output: Book/ReportPh.D. thesisResearch

  21. Published

    PSC-db: A Structured and Searchable 3D-Database for Plant Secondary Compounds

    Valdes-Jimenez, A., Pena-Varas, C., Borrego-Munoz, P., Arrue, L., Alegria-Arcos, M., Nour-Eldin, Hussam Hassan, Dreyer, I., Nunez-Vivanco, G. & Ramirez, D., 2021, In: Molecules. 26, 4, 10 p., 1124.

    Research output: Contribution to journalJournal articleResearchpeer-review

  22. Published

    PTR2/POT/NPF transporters: what makes them tick?

    Prabhala, B. K., Rahman, M., Nour-Eldin, Hussam Hassan, Jørgensen, Flemming Steen & Mirza, Osman Asghar, 2021, In: Advances in Protein Chemistry and Structural Biology. 123, p. 219-240 22 p.

    Research output: Contribution to journalReviewResearchpeer-review

  23. Published

    Quantitative interactions: The disease outcome of Botrytis cinerea across the plant kingdom

    Caseys, C., Shi, G., Soltis, N., Gwinner, R., Corwin, J., Atwell, S. & Kliebenstein, D. J., 2021, In: G3: Genes, Genomes, Genetics. 11, 8, 15 p., jkab175.

    Research output: Contribution to journalReviewResearchpeer-review

  24. Published

    Root-type ferredoxin-NADP+ oxidoreductase isoforms in Arabidopsis thaliana: Expression patterns, location and stress responses

    Grabsztunowicz, M., Rantala, M., Ivanauskaite, A., Blomster, T., Koskela, M. M., Vuorinen, K., Tyystjarvi, E., Burow, Meike, Overmyer, K., Mahonen, A. P. & Mulo, P., 2021, In: Plant, Cell and Environment. 44, 2, p. 548-558 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  25. Published

    Scission of Glucosidic Bonds by a Lentinus similis Lytic Polysaccharide Monooxygenases Is Strictly Dependent on H2O2while the Oxidation of Saccharide Products Depends on O2

    Brander, Søren, Tokin, Radina, Ipsen, J., Jensen, Poul Erik, Hernández-Rollán, C., Nørholm, M. H. H., Lo Leggio, Leila, Dupree, P. & Johansen, Katja Salomon, 2021, In: ACS Catalysis. 11, 22, p. 13848-13859

    Research output: Contribution to journalJournal articleResearchpeer-review

  26. Published

    Specialized metabolites and valuable molecules in crop and medicinal plants: The evolution of their use and strategies for their production

    D’Amelia, V., Docimo, T., Crocoll, C. & Rigano, M. M., 2021, In: Genes. 12, 6, 20 p., 936.

    Research output: Contribution to journalJournal articleResearchpeer-review

  27. Published

    Stationary sieve element proteins

    Sanden, Niels Christian Holm & Schulz, Alexander, 2021, In: Journal of Plant Physiology. 266, 10 p., 153511.

    Research output: Contribution to journalReviewResearchpeer-review

  28. Published

    Sugar transporters enable a leaf beetle to accumulate plant defense compounds

    Yang, Z. L., Nour-Eldin, Hussam Hassan, Hänniger, S., Reichelt, M., Crocoll, C., Seitz, F., Vogel, H. & Beran, F., 2021, In: Nature Communications. 12, 1, 12 p., 2658.

    Research output: Contribution to journalJournal articleResearchpeer-review

  29. Published

    The GORKY glycoalkaloid transporter is indispensable for preventing tomato bitterness

    Kazachkova, Y., Zemach, I., Panda, S., Bocobza, S., Vainer, A., Rogachev, I., Dong, Y., Ben-Dor, S., Veres, D., Kanstrup, Christa, Lambertz, S. K., Crocoll, C., Hu, Y., Shani, E., Michaeli, S., Nour-Eldin, Hussam Hassan, Zamir, D. & Aharoni, A., 2021, In: Nature Plants. 7, p. 468-480

    Research output: Contribution to journalJournal articleResearchpeer-review

  30. Published

    The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency

    Gowthaman, U., Ivanov, M., Schwarz, Isabel Aimèe, Patel, H. P., Müller, N. A., Garcia Pichardo, Desire, Lenstra, T. L. & Marquardt, Sebastian, 2021, In: EMBO Journal. 40, 23, 16 p., 108903.

    Research output: Contribution to journalJournal articleResearchpeer-review

  31. Published

    The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase

    Krause, S. T., Liao, P., Crocoll, C., Boachon, B., Foerster, C., Leidecker, F., Wiese, N., Zhao, D., Wood, J. C., Buell, C. R., Gershenzon, J., Dudareva, N. & Degenhardt, J., 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 52, 10 p., e2110092118.

    Research output: Contribution to journalJournal articleResearchpeer-review

  32. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, M., Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journalJournal articleResearchpeer-review

  33. Published

    VC1 catalyses a key step in the biosynthesis of vicine in faba bean

    Björnsdotter, E., Nadzieja, M., Chang, W., Escobar-Herrera, L., Mancinotti, Davide, Angra, D., Xia, Xinxing, Tacke, R., Khazaei, H., Crocoll, C., Vandenberg, A., Link, W., Stoddard, F. L., O'Sullivan, D. M., Stougaard, J., Schulman, A. H., Andersen, S. U. & Geu-Flores, Fernando, 2021, In: Nature Plants. 7, p. 923–931

    Research output: Contribution to journalJournal articleResearchpeer-review

  34. Published

    Winter fields antisense RNAs to kick off flowering

    Jin, Yu & Marquardt, Sebastian, 2021, In: Genes and Development. 38, 11-12, p. 785-786 2 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  35. 2022
  36. Published

    A fungal lytic polysaccharide monooxygenase is required for cell wall integrity, thermotolerance, and virulence of the fungal human pathogen Cryptococcus neoformans

    Probst, C., Hallas-Møller, Magnus, Ipsen, J. Ø., Brooks, J. T., Andersen, Karsten Wiberg, Haon, M., Berrin, J., Martens, Helle Jakobe, Nichols, C. B., Johansen, Katja Salomon & Alspaugh, J. A., 2022, bioRxiv, 70 p.

    Research output: Working paperPreprintResearch

  37. Published

    A plant balancing act: Meshing new and existing metabolic pathways towards an optimized system

    Angelovici, R. & Kliebenstein, D., 2022, In: Current Opinion in Plant Biology. 66, 102173.

    Research output: Contribution to journalReviewResearchpeer-review

  38. Published

    ATP hydrolytic activity of purified Spf1p correlate with micellar lipid fluidity and is dependent on conserved residues in transmembrane helix M1

    Ipsen, J. Ø. & Sørensen, D. M., 2022, In: PLoS ONE. 17, 10, 18 p., e0274908.

    Research output: Contribution to journalJournal articleResearchpeer-review

  39. Published

    Aphid Species and Feeding Location on Canola Influences the Impact of Glucosinolates on a Native Lady Beetle Predator

    Cibils-Stewart, X., Kliebenstein, D. J., Li, B., Giles, K., McCornack, B. P. & Nechols, J., 2022, In: Environmental Entomology. 51, 1, p. 52-62 11 p.

    Research output: Contribution to journalJournal articleResearchpeer-review

  40. Published

    Clopyralid applied to winter oilseed rape (Brassica napus L.) contaminates the food products nectar, honey and pollen

    Hansted, L., Crocoll, C., Bitarafan, Z. & Andreasen, Christian, 2022, In: Food Control. 140, 7 p., 109124.

    Research output: Contribution to journalJournal articleResearchpeer-review

  41. Published

    Comparison of Genome and Plasmid-Based Engineering of Multigene Benzylglucosinolate Pathway in Saccharomyces cerevisiae

    Wang, Cuiwei, Poborsky, Michal, Crocoll, C., Nødvig, C. S., Mortensen, U. H. & Halkier, Barbara Ann, 2022, In: Applied and Environmental Microbiology. 88, 22, 15 p., e00978-22.

    Research output: Contribution to journalJournal articleResearchpeer-review

  42. Published

    Cyanogenesis in the Sorghum Genus: From Genotype to Phenotype

    Cowan, M., Møller, Birger Lindberg, Norton, S., Knudsen, C., Crocoll, C., Furtado, A., Henry, R., Blomstedt, C. & Gleadow, R. M., 2022, In: Genes. 13, 17 p., 140.

    Research output: Contribution to journalJournal articleResearchpeer-review

  43. Published

    Cytosolic phosphofructokinases are important for sugar homeostasis in leaves of Arabidopsis thaliana

    Perby, L. K., Richter, S., Weber, K., Hieber, A. J., Hess, N., Crocoll, C., Mogensen, Helle Kildal, Pribil, Mathias, Burow, Meike, Nielsen, T. H. & Mustroph, A., 2022, In: Annals of Botany. 129, 1, p. 37-52

    Research output: Contribution to journalJournal articleResearchpeer-review

  44. Published

    Elucidation of the structure-function relationship in the Nitrate and Peptide Transporter Family

    Kanstrup, Christa, 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 189 p.

    Research output: Book/ReportPh.D. thesisResearch

  45. Published

    Engineering Escherichia coli towards production of plant specialized metabolites

    Poborsky, Michal, 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 129 p.

    Research output: Book/ReportPh.D. thesisResearch

  46. Published

    Epigenetic Impact on Plant Plasticity

    Aller, Emma Sofie Timm, 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 175 p.

    Research output: Book/ReportPh.D. thesisResearch

  47. Published

    Expanding the toolbox for Synthetic Biology by plant-derived modules: From protein expression regulation to protein scaffolding

    Borràs I Gas, G., 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 131 p.

    Research output: Book/ReportPh.D. thesisResearch

  48. Published

    FIONA1-mediated methylation of the 3'UTR of FLC affects FLC transcript levels and flowering in Arabidopsis

    Sun, B., Bhati, K. K., Song, P., Edwards, Ashleigh Katrina, Petri, Louise, Kruusvee, Valdeko, Blaakmeer, A., Dolde, U., Rodrigues, V., Straub, D., Yang, J., Jia, G. & Wenkel, Stephan, 2022, In: PLOS Genetics. 18, 9, 22 p., e1010386.

    Research output: Contribution to journalJournal articleResearchpeer-review

  49. Published

    Genetic variation underlying differential ammonium and nitrate responses in Arabidopsis thaliana

    Katz, E., Knapp, A., Lensink, M., Keller, C. K., Stefani, J., Li, J., Shane, E., Tuermer-Lee, K., Bloom, A. J. & Kliebenstein, D. J., 2022, In: The Plant Cell. 34, 12, p. 4696-4713

    Research output: Contribution to journalJournal articleResearchpeer-review

  50. Published

    Gibberellin and abscisic acid transporters facilitate endodermal suberin formation in Arabidopsis

    Binenbaum, J., Wulff, N., Camut, L., Kiradjiev, K., Tal, I., Vasuki, H., Anfang, M., Zhang, Y., Sakvarelidze-Achard, L., Davière, J., Ripper, D., Bergua, E., Nour-Eldin, Hussam Hassan & Shani, E., 2022.

    Research output: Working paperPreprintResearch

  51. Published
  52. Published

    Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis

    Zhong, Z., Wang, Y., Wang, M., Yang, F., Thomas, Quentin, Xue, Y., Zhang, Y., Liu, W., Jami-Alahmadi, Y., Xu, L., Feng, S., Marquardt, Sebastian, Wohlschlegel, J. A., Ausin, I. & Jacobsen, S. E., 2022, In: Nature Communications. 13, 15 p., 6970.

    Research output: Contribution to journalJournal articleResearchpeer-review