Tue Kjærgaard Nielsen

Tue Kjærgaard Nielsen

Tenure Track Assistant Professor

ORCID: 0000-0001-6610-8450

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  1. Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

    Lorentzen, M. P., Campbell-Sills, H., Jorgensen, T. S., Nielsen, Tue Kjærgaard, Coton, M., Coton, E., Hansen, L. & Lucas, P. M., 2019, In: BMC Genomics. 20, 330.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Four novel Curtobacterium phages isolated from environmental samples

    Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

    Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem

    Imparato, V., Hansen, Veronika, Santos, S., Nielsen, Tue Kjærgaard, Giagnoni, L., Hauggaard-Nielsen, H., Johansen, A., Renella, G. & Winding, A., 2016, In: Soil Biology & Biochemistry. 99, p. 128-136 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids

    Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples

    Jacobsen, C. S., Nielsen, T. K., Vester, J. K., Stougaard, P., Nielsen, J. L., Voriskova, J., Winding, A., Baldrian, P., Liu, B., Frostegard, A., Pedersen, D., Tveit, A. T., Svenning, M. M., Tebbe, C. C., Ovreas, L., Jakobsen, P. B., Blazewicz, S. J., Hubablek, V., Bertilsson, S., Hansen, L. H. & 4 others, Cary, S. C., Holben, W. E., Ekelund, Flemming & Bælum, J., 2018, In: Scientific Reports. 8, p. 1-6 6 p., 5711.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition

    Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Land use as a driver for protist community structure in soils under agricultural use across Europe

    Santos, S. S., Schöler, A., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg, Schloter, M. & Winding, A., 2020, In: Science of the Total Environment. 717, 137228.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function: [incl. Erratum]

    Reddington, K., Eccles, D., O'Grady, J., Drown, D. M., Hansen, L. H., Nielsen, T. K., Ducluzeau, A-L., Leggett, R. M., Heavens, D., Peel, N., Snutch, T. P., Bayega, A., Oikonomopoulos, S., Ragoussis, J., Barry, T., van der Helm, E., Jolic, D., Richardson, H., Jansen, H., Tyson, J. R. & 2 others, Jain, M. & Brown, B. L., 2020, In: GigaScience. 9, 6, 12 p., 053.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay

    Alanin, K. W. S., Forero Junco, Laura Milena, Jørgensen, J. B., Nielsen, Tue Kjærgaard, Rasmussen, Morten Arendt, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Viruses. 13, 6, 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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