Tue Kjærgaard Nielsen
Tenure Track Assistant Professor
Microbial Ecology and Biotechnology
Thorvaldsensvej 40
1871 Frederiksberg C
- 2013
- Published
Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas
Nielsen, Tue Kjærgaard, Xu, Z., Gozdereliler, E., Aamand, J., Hansen, Lars Hestbjerg & Sørensen, S. R., 2013, In: P L o S One. 8, 12, 9 p., e83346.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
Comparison of three DNA extraction methods for recovery of soil protist DNA
Santos, S. S., Nielsen, Tue Kjærgaard, Hansen, L. H. & Winding, A., 2015, In: Journal of Microbiological Methods. 115, p. 13-19 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Draft Genome Sequence of Isoproturon-Mineralizing Sphingomonas sp. SRS2, Isolated from an Agricultural Field in the United Kingdom
Nielsen, Tue Kjærgaard, Sørensen, S. R. & Hansen, Lars Hestbjerg, 2015, In: Genome Announcements. 3, 3, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequence of MCPA-degrading Sphingomonas sp. strain ERG5, isolated from a groundwater aquifer in Denmark
Nielsen, Tue Kjærgaard, Kot, Witold, Sørensen, S. R. & Hansen, Lars Hestbjerg, 2015, In: Genome Announcements. 3, 1, 2 p., e01529-14.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
Establishment of Bacterial Herbicide Degraders in a Rapid Sand Filter for Bioremediation of Phenoxypropionate-Polluted Groundwater
Feld, L., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg, Aamand, J. & Albers, C. N., 2016, In: Applied and Environmental Microbiology. 82, 3, p. 878-887Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gasification biochar has limited effects on functional and structural diversity of soil microbial communities in a temperate agroecosystem
Imparato, V., Hansen, Veronika, Santos, S., Nielsen, Tue Kjærgaard, Giagnoni, L., Hauggaard-Nielsen, H., Johansen, A., Renella, G. & Winding, A., 2016, In: Soil Biology & Biochemistry. 99, p. 128-136 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Aeromonas salmonicida subsp. salmonicida strains isolated from Chinese freshwater fish contain a novel genomic island and possible regional-specific mobile genetic elements profiles
Long, M., Nielsen, Tue Kjærgaard, Leisner, Jørgen, Hansen, L. H., Shen, Z. X., Zhang, Q. Q. & Li, A., Sep 2016, In: F E M S Microbiology Letters. 363, 17, 8 p., 190.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Use of WGS data for investigation of a long-term NDM-1-producing Citrobacter freundii outbreak and secondary in vivo spread of blaNDM-1 to Escherichia coli, Klebsiella pneumoniae and Klebsiella oxytoca
Hammerum, A. M., Hansen, F., Linde Nielsen, H., Jakobsen, L., Stegger, M., Andersen, P. S., Jensen, P., Nielsen, Tue Kjærgaard, Hansen, L. H., Hasman, H. & Fuglsang-Damgaard, D., Nov 2016, In: Journal of Antimicrobial Chemotherapy. 71, 11, p. 3117-3124 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
Degradation of mecoprop in polluted landfill leachate and waste water in a moving bed biofilm reactor
Escolà Casas, M., Nielsen, Tue Kjærgaard, Kot, Witold, Hansen, Lars Hestbjerg, Johansen, A. & Bester, K., 2017, In: Water Research. 121, p. 213-220Research output: Contribution to journal › Journal article › Research › peer-review
Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH
Nielsen, Tue Kjærgaard, Rasmussen, M., Demanèche, S., Cecillon, S., Vogel, T. M. & Hansen, Lars Hestbjerg, 2017, In: Genome Biology and Evolution. 9, 9, p. 2477-2490Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages
Nielsen, Tue Kjærgaard, Carstens, A. B., Browne, P., Lametsch, Rene, Neve, H., Kot, Witold & Hansen, Lars Hestbjerg, 2017, In: Scientific Reports. 7, 10 p., 13566.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil DNA extraction procedure influences protist 18S rRNA gene community profiling outcome
Santos, S. S., Nunes, I. M., Nielsen, Tue Kjærgaard, Jacquiod, S. J. A., Hansen, L. H. & Winding, A., Jul 2017, In: Protist. 168, 3, p. 283-293 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples
Jacobsen, C. S., Nielsen, T. K., Vester, J. K., Stougaard, P., Nielsen, J. L., Voriskova, J., Winding, A., Baldrian, P., Liu, B., Frostegard, A., Pedersen, D., Tveit, A. T., Svenning, M. M., Tebbe, C. C., Ovreas, L., Jakobsen, P. B., Blazewicz, S. J., Hubablek, V., Bertilsson, S., Hansen, L. H. & 4 others, , 2018, In: Scientific Reports. 8, p. 1-6 6 p., 5711.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species
Fietz, K., Hintze, C. O. R., Skovrind, Mikkel, Nielsen, Tue Kjærgaard, Limborg, Morten Tønsberg, Krag, M. A., Palsboll, P. J., Hansen, L. H., Møller, Peter Rask & Gilbert, M Thomas P, 2018, In: Microbiome. 6, 16 p., 82.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids
Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.Research output: Working paper › Preprint › Research
- 2019
- Published
Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2
Sher, S., Rehman, A., Hansen, Lars Hestbjerg & Nielsen, Tue Kjærgaard, 2019, In: Microbiology Resource Announcements. 8, 31, 2 p., e00531-19.Research output: Contribution to journal › Journal article › Research › peer-review
Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains
Lorentzen, M. P., Campbell-Sills, H., Jorgensen, T. S., Nielsen, Tue Kjærgaard, Coton, M., Coton, E., Hansen, L. & Lucas, P. M., 2019, In: BMC Genomics. 20, 330.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community
Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs
Kot, Witold, Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, Alexander Byth, Moineau, S., Swairjo, M. A. & Hansen, Lars Hestbjerg, 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Land use as a driver for protist community structure in soils under agricultural use across Europe
Santos, S. S., Schöler, A., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg, Schloter, M. & Winding, A., 2020, In: Science of the Total Environment. 717, 137228.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function: [incl. Erratum]
Reddington, K., Eccles, D., O'Grady, J., Drown, D. M., Hansen, L. H., Nielsen, T. K., Ducluzeau, A-L., Leggett, R. M., Heavens, D., Peel, N., Snutch, T. P., Bayega, A., Oikonomopoulos, S., Ragoussis, J., Barry, T., van der Helm, E., Jolic, D., Richardson, H., Jansen, H., Tyson, J. R. & 2 others, , 2020, In: GigaScience. 9, 6, 12 p., 053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier
Zeng, Y., Chen, X., Madsen, A. M., Zervas, A., Nielsen, Tue Kjærgaard, Andrei, A., Lund-Hansen, L. C., Liu, Y. & Hansen, Lars Hestbjerg, 2020, In: mBio. 11, 6, 22 p., e02641-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling
Eriksen, A. M. H., Puetz, Lara Christine, Rocha, C., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2020, In: STAR: Science & Technology of Archaeological Research. 6, 1, p. 1-15 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
A non-antifungal rhizobacterium stimulates plant immunity to protect tomato and Kalanchoe against Fusarium oxysporum and wheat against Zymoseptoria tritici
Madriz Ordenana, Kenneth, Pazarlar, Sercan, Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Nielsen, K. L., Zhang, Y. & Thordal-Christensen, Hans, 2021. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
ID: 217134357
Most downloads
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208
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Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
197
downloads
Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
188
downloads
Draft genome sequence of MCPA-degrading Sphingomonas sp. strain ERG5, isolated from a groundwater aquifer in Denmark
Research output: Contribution to journal › Journal article › Research › peer-review
Published