A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. / Bælum, Jacob; Chambon, Julie Claire Claudia; Scheutz, Charlotte; Binning, Philip John; Laier, Troels; Bjerg, Poul Løgstrup; Jacobsen, Carsten Suhr.

In: Water Research, Vol. 47, No. 7, 2013, p. 2467-2478.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Bælum, J, Chambon, JCC, Scheutz, C, Binning, PJ, Laier, T, Bjerg, PL & Jacobsen, CS 2013, 'A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment', Water Research, vol. 47, no. 7, pp. 2467-2478. https://doi.org/10.1016/j.watres.2013.02.016

APA

Bælum, J., Chambon, J. C. C., Scheutz, C., Binning, P. J., Laier, T., Bjerg, P. L., & Jacobsen, C. S. (2013). A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. Water Research, 47(7), 2467-2478. https://doi.org/10.1016/j.watres.2013.02.016

Vancouver

Bælum J, Chambon JCC, Scheutz C, Binning PJ, Laier T, Bjerg PL et al. A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. Water Research. 2013;47(7):2467-2478. https://doi.org/10.1016/j.watres.2013.02.016

Author

Bælum, Jacob ; Chambon, Julie Claire Claudia ; Scheutz, Charlotte ; Binning, Philip John ; Laier, Troels ; Bjerg, Poul Løgstrup ; Jacobsen, Carsten Suhr. / A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. In: Water Research. 2013 ; Vol. 47, No. 7. pp. 2467-2478.

Bibtex

@article{549aa138190a41d58c9e244f77b63973,
title = "A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment",
abstract = "We used current knowledge of cellular processes involved in reductive dechlorination to develop a conceptual model to describe the regulatory system of dechlorination at the cell level; the model links bacterial growth and substrate consumption to the abundance of messenger RNA of functional genes involved in the dechlorination process. The applicability of the model was tested on a treatability study of biostimulated and bioaugmented microcosms. Using quantitative real time PCR, high-resolution expression profiles of the functional reductive dehalogenase genes bvcA and vcrA were obtained during two consecutive dechlorination events of trichlorethene, cis-dichlorethene and vinyl chloride. Up-regulation of the bvcA (for the biostimulated microcosms) and vcrA (for the bioaugmented microcosms) gene expression fitted well with high rates of dechlorination of vinyl chloride, while no known transcripts could be measured during trichloroethene and cis-dichlorethene dechlorination. Maximum concentrations of 2.1 and 1.7 transcripts per gene of the bvcA and vcrA genes, respectively, were measured at the same time points as maximum dechlorination rates were observed. The developed model compared well with the experimental data for both biostimulated and bioaugmented microcosms under non-steady state conditions and was supported by results from a recently published study under steady state conditions. (C) 2013 Published by Elsevier Ltd.",
keywords = "Molecular microbial ecology, Conceptual model, Dechlorination genes, mRNA extraction from clay rich soil, Quantitative PCR, Dehalococcoides spp.",
author = "Jacob B{\ae}lum and Chambon, {Julie Claire Claudia} and Charlotte Scheutz and Binning, {Philip John} and Troels Laier and Bjerg, {Poul L{\o}gstrup} and Jacobsen, {Carsten Suhr}",
year = "2013",
doi = "10.1016/j.watres.2013.02.016",
language = "English",
volume = "47",
pages = "2467--2478",
journal = "Water Research",
issn = "0043-1354",
publisher = "I W A Publishing",
number = "7",

}

RIS

TY - JOUR

T1 - A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment

AU - Bælum, Jacob

AU - Chambon, Julie Claire Claudia

AU - Scheutz, Charlotte

AU - Binning, Philip John

AU - Laier, Troels

AU - Bjerg, Poul Løgstrup

AU - Jacobsen, Carsten Suhr

PY - 2013

Y1 - 2013

N2 - We used current knowledge of cellular processes involved in reductive dechlorination to develop a conceptual model to describe the regulatory system of dechlorination at the cell level; the model links bacterial growth and substrate consumption to the abundance of messenger RNA of functional genes involved in the dechlorination process. The applicability of the model was tested on a treatability study of biostimulated and bioaugmented microcosms. Using quantitative real time PCR, high-resolution expression profiles of the functional reductive dehalogenase genes bvcA and vcrA were obtained during two consecutive dechlorination events of trichlorethene, cis-dichlorethene and vinyl chloride. Up-regulation of the bvcA (for the biostimulated microcosms) and vcrA (for the bioaugmented microcosms) gene expression fitted well with high rates of dechlorination of vinyl chloride, while no known transcripts could be measured during trichloroethene and cis-dichlorethene dechlorination. Maximum concentrations of 2.1 and 1.7 transcripts per gene of the bvcA and vcrA genes, respectively, were measured at the same time points as maximum dechlorination rates were observed. The developed model compared well with the experimental data for both biostimulated and bioaugmented microcosms under non-steady state conditions and was supported by results from a recently published study under steady state conditions. (C) 2013 Published by Elsevier Ltd.

AB - We used current knowledge of cellular processes involved in reductive dechlorination to develop a conceptual model to describe the regulatory system of dechlorination at the cell level; the model links bacterial growth and substrate consumption to the abundance of messenger RNA of functional genes involved in the dechlorination process. The applicability of the model was tested on a treatability study of biostimulated and bioaugmented microcosms. Using quantitative real time PCR, high-resolution expression profiles of the functional reductive dehalogenase genes bvcA and vcrA were obtained during two consecutive dechlorination events of trichlorethene, cis-dichlorethene and vinyl chloride. Up-regulation of the bvcA (for the biostimulated microcosms) and vcrA (for the bioaugmented microcosms) gene expression fitted well with high rates of dechlorination of vinyl chloride, while no known transcripts could be measured during trichloroethene and cis-dichlorethene dechlorination. Maximum concentrations of 2.1 and 1.7 transcripts per gene of the bvcA and vcrA genes, respectively, were measured at the same time points as maximum dechlorination rates were observed. The developed model compared well with the experimental data for both biostimulated and bioaugmented microcosms under non-steady state conditions and was supported by results from a recently published study under steady state conditions. (C) 2013 Published by Elsevier Ltd.

KW - Molecular microbial ecology

KW - Conceptual model

KW - Dechlorination genes

KW - mRNA extraction from clay rich soil

KW - Quantitative PCR

KW - Dehalococcoides spp.

U2 - 10.1016/j.watres.2013.02.016

DO - 10.1016/j.watres.2013.02.016

M3 - Journal article

C2 - 23490098

VL - 47

SP - 2467

EP - 2478

JO - Water Research

JF - Water Research

SN - 0043-1354

IS - 7

ER -

ID: 118453979