Section for Plant Biochemistry

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  1. 2016
  2. Published

    Identification of PTP1B and α-glucosidase inhibitory serrulatanes from Eremophila spp. by combined use of dual high-resolution PTP1B and α-glucosidase inhibition profiling and HPLC-HRMS-SPE-NMR

    Wubshet, S. G., Tahtah, Y., Heskes, A. M., Kongstad, Kenneth Thermann, Pateraki, Irini, Hamberger, B. R., Møller, Birger Lindberg & Stærk, Dan, 2016, In: Journal of Natural Products. 79, 4, p. 1063-1072 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Identification of circular RNAs from the parental genes involved in multiple aspects of cellular metabolism in barley

    Darbani Shirvanehdeh, B., Noeparvar, S. & Borg, S., 2016, In: Frontiers in Plant Science. 7, 8 p., 776.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Insight into biochemical characterization of plant sesquiterpene synthases

    Manczak, T. & Simonsen, H. T., 2016, In: Analytical Chemistry Insights. 11, Suppl. 1, p. 1-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Lepidopteran defence droplets - a composite physical and chemical weapon against potential predators

    Pentzold, S., Zagrobelny, Mika, Khakimov, Bekzod, Engelsen, Søren Balling, Clausen, Henrik, Petersen, Bent L, Borch, J., Møller, Birger Lindberg & Bak, Søren, 2016, In: Scientific Reports. 6, 11 p., 22407 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Links of conformational sampling to functional plasticity and clinical phenotypes by single molecule studies

    Moses, M. E., Thodberg, S., Bavishi, K., Eiersholt, S., Li, D., Stamou, Dimitrios, Møller, Birger Lindberg, Laursen, Tomas & Hatzakis, Nikos, 2016, In: Biophysical Society. Annual Meeting. Abstracts. 110, 3, p. 397A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  7. Published

    Locking-to-unlocking system is an efficient strategy to design DNA/silver nanoclusters (AgNCs) probe for human miRNAs

    Shah, P., Choi, S. W., Kim, H., Cho, S. K., Bhang, Y., Ryu, M. Y., Thulstrup, Peter Waaben, Bjerrum, Morten Jannik & Yang, S. W., 2016, In: Nucleic Acids Research. 44, 6, 11 p., e57.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Metabolic Engineering of Chemical Defence Pathways in Plant Disease Control

    Rook, F., 2016, Plant Pathogen Resistance Biotechnology. Collinge, D. B. (ed.). Wiley-Blackwell, p. 71-89 19 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  9. Published

    Metabolic consequences of knocking out UGT85B1, the gene encoding the glucosyltransferase required for synthesis of dhurrin in Sorghum bicolor (L. Moench)

    Blomstedt, C. K., O'Donnell, N. H., Bjarnholt, Nanna, Neale, A. D., Hamill, J. D., Møller, Birger Lindberg & Gleadow, R. M., 2016, In: Plant and Cell Physiology. 57, 2, p. 373-386 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Metabolic engineering of light-driven cytochrome P450 dependent pathways into Synechocystis sp. PCC 6803

    Wlodarczyk, A. J., Gnanasekaran, Thiyagarajan, Nielsen, A. J. Z., Nokolunga, N., Mellor, Silas Busck, Manja, L., Frederik Bang Thøfner, J., Olsen, C. E., Motawie, Mohammed Saddik, Burow, Meike, Pribil, Mathias, Feussner, I., Møller, Birger Lindberg & Jensen, Poul Erik, 2016, In: Metabolic Engineering. 33, p. 1-11 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Methyl transfer in glucosinolate biosynthesis mediated by indole glucosinolate O-Methyltransferase 5

    Pfalz, M., Mukhaimar, M., Perreau, F., Kirk, J., Hansen, Cecilie Ida Cetti, Olsen, C. E., Agerbirk, Niels & Kroymann, J., 2016, In: Plant Physiology. 172, 4, p. 2190-2203 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    MicroProtein-mediated recruitment of CONSTANS into a TOPLESS trimeric complex represses flowering in Arabidopsis

    Graeff, M., Straub, D., Eguen, T. E., Dolde, U. M., Saltenis, Vandasue, Brandt, R. & Wenkel, Stephan, 2016, In: P L o S Genetics. 12, 3, 22 p., e1005959.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Microbial production of next-generation stevia sweeteners

    Olsson, K., Carlsen, S., Semmler, A., Simón, E., Mikkelsen, M. D. & Møller, Birger Lindberg, 2016, In: Microbial Cell Factories. 15, 14 p., 207.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Multiple essential MT1-MMP functions in tooth root formation, dentinogenesis, and tooth eruption

    Xu, H., Snider, T. N., Wimer, H. F., Yamada, S. S., Yang, T., Holmbeck, Kenn & Foster, B. L., 2016, In: Matrix Biology. 52-54, p. 266-283 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Oxidation and cyclization of Casbene in the biosynthesis of Euphorbia factors from mature seeds of Euphorbia lathyris L

    Luo, Dan, Callari, R., Hamberger, B., Wubshet, S. G., Nielsen, M. T., Andersen-Ranberg, Johan, Hallström, B. M., Cozzi, F., Heider, H., Møller, Birger Lindberg, Stærk, Dan & Hamberger, B. R., 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 34, p. E5082-E5089 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Phosphorylation at serine 52 and 635 does not alter the transport properties of glucosinolate transporter AtGTR1

    Jørgensen, M. E., Olsen, C. E., Halkier, Barbara Ann & Nour-Eldin, Hussam Hassan, 2016, In: Plant Signalling & Behavior. 11, 2, 6 p., e1071751.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Post-translational regulation of miRNA pathway components, AGO1 and HYL1, in plants

    Cho, S. K., Ryu, M. Y., Shah, P., Poulsen, C. P. & Yang, S. W., 2016, In: Molecules and Cells. 39, 8, p. 581-586 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Regulation of MIR165/166 by class II and class III homeodomain leucine zipper proteins establishes leaf polarity

    Merelo, P., Ram, H., Caggiano, M. P., Ohno, C., Ott, F., Straub, D., Graeff, M., Cho, S. K., Yang, S. W., Wenkel, Stephan & Heisler, M. G., 2016, In: Proceedings of the National Academy of Sciences of the United States of America. 113, 42, p. 11973-11978 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Role of the Colletotrichum acutatum sesquiterpene synthase CaTPS in the biosynthesis of sesquiterpenoids

    Amby, Daniel Buchvaldt, Manczak, T., Petersen, Mikael Agerlin, Sundelin, T., Weitzel, C., Grajewski, M., Simonsen, H. T. & Jensen, Birgit, 2016, In: Microbiology. 162, 10, p. 1773-1783

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Screening for triterpenoid saponins in plants using hyphenated analytical platforms

    Khakimov, Bekzod, Tseng, L. H., Godejohann, M., Bak, Søren & Engelsen, Søren Balling, 2016, In: Molecules. 21, 12, 19 p., 1614.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Structural determinants of reductive terpene cyclization in iridoid biosynthesis

    Kries, H., Caputi, L., Stevenson, C. E. M., Kamileen, M. O., Sherden, N. H., Geu-Flores, Fernando, Lawson, D. M. & O'Connor, S. E., 2016, In: Nature Chemical Biology. 12, 1, p. 6-8 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The Arabidopsis NPF3 protein is a GA transporter

    Tal, I., Zhang, Y., Jørgensen, M. E., Pisanty, O., Barbosa, I. C. R., Zourelidou, M., Regnault, T., Crocoll, C., Olsen, C. E., Weinstain, R., Schwechheimer, C., Halkier, Barbara Ann, Nour-Eldin, Hussam Hassan, Estelle, M. & Shani, E., 2016, In: Nature Communications. 7, 20 p., 11486.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The Mystery of Spot Blotch Disease Caused by the Fungal Pathogen Bipolaris sorokiniana on Barley (Hordeum vulgare L)

    Gjendal, N., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    The biosynthetic gene cluster for the cyanogenic glucoside dhurrin in Sorghum bicolor contains its co-expressed vacuolar MATE transporter

    Darbani Shirvanehdeh, B., Motawie, Mohammed Saddik, Olsen, C. E., Nour-Eldin, Hussam Hassan, Møller, Birger Lindberg & Rook, F., 2016, In: Scientific Reports. 6, 8 p., 37079.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Tomato fruit carotenoid biosynthesis is adjusted to actual ripening progression by a light-dependent mechanism

    Llorente, B., D'Andrea, L., Aguila Ruiz-Sola, M., Botterweg Paredes, E., Pulido, P., Andilla, J., Loza-Alvarez, P. & Rodriguez-Concepcion, M., 2016, In: Plant Journal. 85, 1, p. 107-119 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Transcriptome sequencing in narrow-leafed lupin (Lupinus angustifolius): combining short- and long-read sequencing platforms

    Yang, T., Nagy, I., Asp, T. & Geu-Flores, Fernando, 2016, In: Planta Medica. 82, S 01, 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

  27. Published

    Transfer of the cytochrome P450-dependent dhurrin pathway from Sorghum bicolor into Nicotiana tabacum chloroplasts for light-driven synthesis

    Gnanasekaran, Thiyagarajan, Karcher, D., Nielsen, A. J. Z., Martens, Helle Jakobe, Ruf, S., Kroop, X., Olsen, C. E., Motawie, Mohammed Saddik, Pribil, Mathias, Møller, Birger Lindberg, Bock, R. & Jensen, Poul Erik, 2016, In: Journal of Experimental Botany. 67, 8, p. 2495-2506 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Two key polymorphisms in a newly discovered allele of the Vitis vinifera TPS24 gene are responsible for the production of the rotundone precursor α-guaiene

    Drew, D. P., Andersen, T. B., Sweetman, C., Møller, Birger Lindberg, Ford, C. & Simonsen, H. T., 2016, In: Journal of Experimental Botany. 67, 3, p. 799-808 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. 2015
  30. Published

    Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast

    Rienzo, A., Poveda Huertes, Daniel, Aydin, S., Buchler, N. E., Pascual-Ahuir, A. & Proft, M., Nov 2015, In: Molecular and Cellular Biology. 35, 21, p. 3669-83 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Sclareol production in the moss Physcomitrella patens and observations on growth and terpenoid biosynthesis

    Pan, X., Han, L., Zhang, Y., Chen, D. & Simonsen, H. T., 22 May 2015, In: Plant Biotechnology Reports. 9, 3, p. 149-159 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Lotus japonicus flowers are defended by a cyanogenic β-glucosidase with highly restricted expression to essential reproductive organs

    Lai, D., Picmanova, M., Hachem, M. A., Motawie, Mohammed Saddik, Olsen, C. E., Møller, Birger Lindberg, Rook, F. & Takos, A. M., 2015, In: Plant Molecular Biology. 89, 1-2, p. 21-34 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A functional EXXEK motif is essential for proton coupling and active glucosinolate transport by NPF2.11

    Jørgensen, M. E., Olsen, C. E., Geiger, D., Mirza, Osman Asghar, Halkier, Barbara Ann & Nour-Eldin, Hussam Hassan, 2015, In: Plant and Cell Physiology. 56, 12, p. 2340-2350 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    A multivariate approach for high throughput pectin profiling by combining glycan microarrays with monoclonal antibodies

    Sousa, A. G., Isager Ahl, Louise, Pedersen, H. L., Fangel, J. U., Sørensen, S. O. & Willats, W. G. T., 2015, In: Carbohydrate Research. 409, p. 41-47 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A recycling pathway for cyanogenic glycosides evidenced by the comparative metabolic profiling in three cyanogenic plant species

    Picmanova, M., Neilson, Elizabeth Heather Jakobsen, Motawie, Mohammed Saddik, Olsen, C. E., Agerbirk, Niels, Gray, C. J., Flitsch, S., Meier, S., Silvestro, D., Jørgensen, Kirsten, Sánchez Pérez, R., Møller, Birger Lindberg & Bjarnholt, Nanna, 2015, In: Biochemical Journal. 469, 3, p. 375-389 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Accumulation of secondary metabolites in healthy and diseased barley, grown under future climate levels of CO2, ozone and temperature

    Mikkelsen, B. L., Olsen, C. E. & Lyngkjær, M. F., 2015, In: Phytochemistry. 118, p. 162-173 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses

    Nafisi, M., Stranne, M., Fimognari, L., Atwell, S., Martens, Helle Jakobe, Pedas, P. R., Hansen, S. F., Nawrath, C., Scheller, H. V., Kliebenstein, D. J. & Sakuragi, Y., 2015, In: Frontiers in Plant Science. 6, 13 p., 550.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Additional diterpenes from Physcomitrella patens synthesized by copalyl diphosphate/kaurene synthase (PpCPS/KS)

    Zhan, X., Bach, S. S., Hansen, N. L., Lunde, C. & Simonsen, H. T., 2015, In: Plant Physiology and Biochemistry. 96, p. 110-114 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Assembly of highly standardized gene fragments for high-level production of porphyrins in E. coli

    Nielsen, M. T., Madsen, K. M., Seppälä, S., Riisberg, L., Harrison, S. J., Møller, Birger Lindberg & Nørholm, M. H. H., 2015, In: A C S Synthetic Biology. 4, 3, p. 274-282 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    CYP76C1 (Cytochrome P450)-mediated linalool metabolism and the formation of volatile and soluble linalool oxides in Arabidopsis flowers: a strategy for defense against floral antagonists

    Boachon, B., Junker, R. R., Miesch, L., Bassard, J. A., Höfer, R., Caillieaudeaux, R., Seidel, D. E., Lesot, A., Heinrich, C., Ginglinger, J., Allouche, L., Vincent, B., Wahyuni, D. S. C., Paetz, C., Beran, F., Miesch, M., Schneider, B., Leiss, K. & Werck-Reichhart, D., 2015, In: The Plant Cell. 27, 10, p. 2972-2990 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Cesium toxicity alters MicroRNA processing and AGO1 expressions in Arabidopsis thaliana

    Jung, I. L., Ryu, M., Cho, S. K., Shah, P., Lee, J. H., Bae, H., Kim, I. G. & Yang, S. W., 2015, In: P L o S One. 10, 5, 17 p., e0125514.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Characterization of Genes Involved in Sesquiterpenoid Biosynthesis from Thapsia garganica and Thapsia laciniata

    Andersen, T. B., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 223 p.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Chemo- and regioselective functionalization of nortrilobolide: application for semi-synthesis of the natural product 2-acetoxytrilobolide

    Doan, T. Q. N., Crestey, F., Olsen, C. E. & Christensen, Søren Brøgger, 2015, In: Journal of Natural Products. 78, 6, p. 1406-1414

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Complex interplay of future climate levels of CO2, ozone and temperature on susceptibility to fungal diseases in barley

    Mikkelsen, B. L., Bagger Jørgensen, R. & Lyngkjær, M. F., 2015, In: Plant Pathology. 64, 2, p. 319-327 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Cu(I)-catalyzed efficient synthesis of 2′-Triazolo-nucleoside conjugates

    Mathur, D., Rana, N., Olsen, C. E., Parmar, V. S. & Prasad, A. K., 2015, In: Journal of Heterocyclic Chemistry. 52, 3, p. 701-710 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Cytochrome P450-enzymes involved in the biosynthesis of mono- and sesquiterpenes

    Weitzel, C. & Simonsen, H. T., 2015, In: Phytochemistry Reviews. 14, 1, p. 7-24 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Cytochromes P450 for terpene functionalisation and metabolic engineering

    Pateraki, Irini, Heskes, A. M. & Hamberger, B. R., 2015, Biotechnology of Isoprenoids. Springer, p. 107-139 33 p. (Advances in Biochemical Engineering. Biotechnology, Vol. 148).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  48. Published

    DESI-MS imaging of metabolites in various plant materials – a matter of sample preparation

    Kato, L., Rook, F., Møller, Birger Lindberg, Hansen, S. H. & Janfelt, Christian, 2015.

    Research output: Contribution to conference › Poster › Research

  49. Published

    DNA/RNA chimera templates improve the emission intensity and target the accessibility of silver nanocluster-based sensors for human microRNA detection

    Shah, P., Choi, S. W., Kim, H., Cho, S. K., Thulstrup, Peter Waaben, Bjerrum, Morten Jannik, Bhang, Y., Ahn, J. C. & Yang, S. W., 2015, In: Analyst. 140, 10, p. 3422-3430 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Deciphering mineral homeostasis in barley seed transfer cells at transcriptional level

    Darbani Shirvanehdeh, B., Noeparvar, S. & Borg, S., 2015, In: PLoS ONE. 10, 11, 26 p., e0141398.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Derivatization of isothiocyanates and their reactive adducts for chromatographic analysis

    Agerbirk, Niels, De Nicola, G. R., Olsen, C. E., Mueller, C. & Iori, R., 2015, In: Phytochemistry. 118, p. 109-115 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Design and synthesis of triazole-linked xylo-nucleoside dimers

    Srivastava, S., Singh, S. K., Sharma, V. K., Mangla, P., Olsen, C. E. & Prasad, A. K., 2015, In: Nucleosides, Nucleotides and Nucleic Acids. 34, 6, p. 388-399 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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