Section for Plant Biochemistry

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  1. 2017
  2. Published

    Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of Zygaena larvae facilitates cyanide release

    Pentzold, S., Jensen, M. K., Matthes, A., Olsen, C. E., Petersen, Bent L, Clausen, Henrik, Møller, Birger Lindberg, Bak, Søren & Zagrobelny, Mika, 2017, In: Royal Society Open Science. 4, 13 p., 170262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Stable Production of the Antimalarial Drug Artemisinin in the Moss Physcomitrella patens

    Khairul Ikram, N. K. B., Beyraghdar Kashkooli, A., Peramuna, A. V., van der Krol, A. R., Bouwmeester, H. & Simonsen, H. T., 2017, In: Frontiers in Bioengineering and Biotechnology. 5, 8 p., 47.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Sunlight-driven environmental benign production of bioactive natural products with focus on diterpenoids and the pathways involved in their formation

    Luo, Dan, Møller, Birger Lindberg & Pateraki, Irini, 2017, In: Chimia. 71, 12, p. 851-858 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Synthesis of C-glucosylated octaketide anthraquinones in Nicotiana benthamiana using a multispecies-based biosynthetic pathway

    Andersen-Ranberg, Johan, Kongstad, Kenneth Thermann, Nafisi, M., Stærk, Dan, Okkels, F. T., Mortensen, U. H., Møller, Birger Lindberg, Frandsen, R. J. N. & Kannangara, R. M., 2017, In: ChemBioChem. 18, 19, p. 1893-1897 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Terpenoid pathway discovery in Tripterygium wilfordii: A Chinese medicinal plant

    Hansen, N. L., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  7. Published

    The CYP79A1 catalyzed conversion of tyrosine to (E)-p-hydroxyphenylacetaldoxime unravelled using an improved method for homology modeling

    Vazquez Albacete, D., Montefiori, M., Kol, S., Motawie, Mohammed Saddik, Møller, Birger Lindberg, Olsen, L. & Nørholm, M. H. H., 2017, In: Phytochemistry. 135, p. 8-17 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    The evolution of chemical defenses in passion vine butterflies: biosynthesis, sequestration, and functional diversification of cyanogenicglucosides in Heliconius

    Pinheiro de Castro, É. C., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

    Byrne, S. L., Erthmann, P. Ø., Agerbirk, Niels, Bak, Søren, Hauser, T. P., Nagy, I., Paina, C. & Asp, T., 2017, In: Scientific Reports. 7, 14 p., 40728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The shady side of leaf development: the role of the REVOLUTA/KANADI1 module in leaf patterning and auxin-mediated growth promotion

    Merelo, P., Botterweg Paredes, E., Heisler, M. G. & Wenkel, Stephan, 2017, In: Current Opinion in Plant Biology. 35, p. 111-116 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    The terpene synthase gene family in Tripterygium wilfordii harbors a labdane-type diterpene synthase among the monoterpene synthase TPS-b subfamily

    Hansen, N. L., Heskes, A. M., Hamberger, B., Olsen, C. E., Hallström, B. M., Andersen-Ranberg, Johan & Hamberger, B. R., 2017, In: The Plant Journal. 89, 3, p. 429-441 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Total biosynthesis of the cyclic AMP booster forskolin from Coleus forskohlii

    Pateraki, Irini, Andersen-Ranberg, Johan, Jensen, N. B., Wubshet, S. G., Heskes, A. M., Forman, Victor, Hallström, B., Hamberger, B., Motawie, Mohammed Saddik, Olsen, C. E., Stærk, Dan, Hansen, J., Møller, Birger Lindberg & Hamberger, B. R., 2017, In: eLife. 6, 28 p., e23001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Transcript profiling of a bitter variety of narrow-leafed lupin to discover alkaloid biosynthetic genes

    Yang, T., Nagy, I., Mancinotti, Davide, Otterbach, S. L., Andersen, T. B., Motawie, Mohammed Saddik, Asp, T. & Geu-Flores, Fernando, 2017, In: Journal of Experimental Botany. 68, 20, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Transcriptome and metabolite changes during hydrogen cyanamide-induced floral bud break in sweet cherry

    Ionescu, I. A., Lopez-Ortega, G., Burow, Meike, Bayo-Canha, A., Junge, A., Gericke, Oliver, Møller, Birger Lindberg & Sánchez Pérez, R., 2017, In: Frontiers in Plant Science. 8, 17 p., 1233.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Triterpenoid Saponin Biosynthesis in the non-model Crucifer Plant Barbares Vulgaris: Gene Discovery Genome Assembly, and Tranformation

    Erthmann, P. Ø., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  16. Published

    Two residues determine the product profile of the class II diterpene synthases TPS14 and TPS21 of Tripterygium wilfordii

    Hansen, N. L., Nissen, J. N. & Hamberger, B. R., 2017, In: Phytochemistry. 138, p. 52-56 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Whole genome analysis of a schistosomiasis-transmitting freshwater snail

    Adema, C. M., Hillier, L. W., Jones, C. S., Loker, E. S., Knight, M., Minx, P., Oliveira, G. D., Raghavan, N., Shedlock, A., do Amaral, L. R., Arican-Goktas, H. D., Assis, J. G., Baba, E. H., Baron, O. L., Bayne, C. J., Bickham-Wright, U., Biggar, K. K., Blouin, M., Bonning, B. C., Botka, C. & 97 others, Bridger, J. M., Buckley, K. M., Buddenborg, S. K., Lima Caldeira, R., Carleton, J., Carvalho, O. S., Castillo, M. G., Chalmers, I. W., Christensens, M., Clifton, S. W., Cosseau, C., Coustau, C., Cripps, R. M., Cuesta-Astroz, Y., Cummins, S. F., di Stephano, L., Dinguirard, N., Duval, D., Emrich, S., Feschotte, C., Feyereisen, R., FitzGerald, P., Fronick, C., Fulton, L., Galinier, R., Gava, S. G., Geusz, M., Geyer, K. K., Giraldo-Calderón, G. I., de Souza Gomes, M., Gordy, M. A., Gourbal, B., Grunau, C., Hanington, P. C., Hoffmann, K. F., Hughes, D. S. T., Humphries, J., Jackson, D. J., Jannotti-Passos, L. K., de Jesus Jeremias, W., Jobling, S., Kamel, B., Kapusta, A., Kaur, S., Koene, J. M., Kohn, A. B., Lawson, D., Lawton, S. P., Liang, D., Limpanont, Y., Liu, S., Lockyer, A. E., Lovato, T. L., Ludolf, F., Magrini, V., McManus, D. P., Medina, M., Misra, M., Mitta, G., Mkoji, G. M., Montague, M. J., Montelongo, C., Moroz, L. L., Munoz-Torres, M. C., Niazi, U., Noble, L. R., Oliveira, F. S., Pais, F. S., Papenfuss, A. T., Peace, R., Pena, J. J., Pila, E. A., Quelais, T., Raney, B. J., Rast, J. P., Rollinson, D., Rosse, I. C., Rotgans, B., Routledge, E. J., Ryan, K. M., Scholte, L. L. S., Storey, K. B., Swain, M., Tennessen, J. A., Tomlinson, C., Trujillo, D. L., Volpi, E. V., Walker, A. J., Wang, T., Wannaporn, I., Warren, W. C., Wu, X., Yoshino, T. P., Junaid Yusuf, M., Zhang, S., Zhao, M. & Wilson, R. K., 2017, In: Nature Communications. 8, 11 p., 15451.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. 2016
  19. Published

    Anthelmintic activity of chicory (Cichorium intybus): in vitro effects on swine nematodes and relationship to sesquiterpene lactone composition

    Williams, Andrew Richard, Peña-Espinoza, M. A., Boas, U., Simonsen, H. T., Enemark, H. L. & Thamsborg, Stig Milan, May 2016, In: Parasitology. 143, 6, p. 770-777 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    In vitro biochemical characterization of all barley endosperm starch synthases

    Cuesta-Seijo, J. A., Nielsen, M. M., Ruzanski, C., Krucewicz, K., Beeren, S. R., Rydhal, M. G., Yoshimura, Y., Striebeck, A., Motawie, Mohammed Saddik, Willats, W. G. T. & Palcic, M. M., 2016, In: Frontiers in Plant Science. 6, 17 p., 1265.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    In vivo assembly of DNA-fragments in the moss, Physcomitrella patens

    King, B. C., Vavitsas, K., Binti Khairul Ikram, N. K., Schrøder, J., Scharff, L., Hamberger, B. R., Jensen, Poul Erik & Simonsen, H. T., 2016, In: Scientific Reports. 6, 7 p., 25030.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Apiose: one of nature's witty games

    Picmanova, M. & Møller, Birger Lindberg, 2016, In: Glycobiology. 26, 5, p. 430-442 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Application of nanodisc technology for direct electrochemical investigation of plant cytochrome P450s and their NADPH P450 oxidoreductase

    Bavishi, K., Laursen, Tomas, Martinez, Karen Laurence, Møller, Birger Lindberg & Della Pia, E. A., 2016, In: Scientific Reports. 6, 10 p., 29459.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Arabidopsis Tóxicos en Levadura 78 (AtATL78) mediates ABA-dependent ROS signaling in response to drought stress

    Suh, J. Y., Kim, S. J., Oh, T. R., Cho, S. K., Yang, S. W. & Kim, W. T., 2016, In: Biochemical and Biophysical Research Communications. 469, 1, p. 8-14 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Aromatic glucosinolate biosynthesis pathway in Barbarea vulgaris and its response to Plutella xylostella infestation

    Liu, T., Zhang, X., Yang, H., Agerbirk, Niels, Qiu, Y., Wang, H., Shen, D., Song, J. & Li, X., 2016, In: Frontiers in Plant Science. 7, 15 p., 83.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Biophysical study of resin acid effects on phospholipid membrane structure and properties

    Jagalski, V., Barker, R., Topgaard, D., Pomorski, Thomas Guenther, Hamberger, B. R. & Cardenas Gomez, M., 2016, In: BBA Biomembranes. 1858, 11, p. 2827-2838 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Biosynthesis of the leucine derived α-, β- and γ-hydroxynitrile glucosides in barley (Hordeum vulgare L.)

    Knoch, E., Motawie, Mohammed Saddik, Olsen, C. E., Møller, Birger Lindberg & Lyngkjær, M. F., 2016, In: Plant Journal. 88, 2, p. 247-256 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Characterization of a dynamic metabolon producing the defense compound dhurrin in sorghum

    Laursen, Tomas, Borch-Jensen, J., Baden, C. K., Bavishi, K., Torta, F., Martens, Helle Jakobe, Silvestro, D., Hatzakis, Nikos, Wenk, M. R., Dafforn, T. R., Olsen, C. E., Motawie, Mohammed Saddik, Hamberger, B. R., Møller, Birger Lindberg & Bassard, J. A., 2016, In: Science (New York, N.Y.). 354, 6314, p. 890-893 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Chemical and pharmacological investigation of Acacia and Santalum species

    Knudsen, D. J., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    Dhurrin metabolism in the developing grain of Sorghum bicolor (L.) Moench investigated by metabolite profiling and novel clustering analyses of time-resolved transcriptomic data

    Nielsen, L. J., Stuart, P., Picmanova, M., Rasmussen, Simon, Olsen, C. E., Harholt, J., Møller, Birger Lindberg & Bjarnholt, Nanna, 2016, In: BMC Genomics. 17, 24 p., 1021.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Domesticating deadly carrots: Predicting the biosynthetic pathway of thapsigargins for the treatment of solid tumors

    Martinez, K. A., Simonsen, H. T., Rønsted, Nina, Andersen, T. B., Barnes, Christopher James, Boughton, B. & Cozzi, F., 2016, In: Planta Medica. 81, S 01, p. S1-S381

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Ecotypic differentiation of two sympatric chemotypes of Barbarea vulgaris (Brassicaceae) with different biotic resistances

    Heimes, C., Agerbirk, Niels, Sørensen, Helle, van Mölken, T. & Hauser, T. P., 2016, In: Plant Ecology. 217, 9, p. 1055-1068 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Endogenous Turnover of Cyanogenic Glycosides in Plants

    Picmanova, M., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 170 p.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    Engineering of methionine chain elongation part of glucoraphanin pathway in E. coli

    Mirza, N. M. A., Crocoll, C., Olsen, C. E. & Halkier, Barbara Ann, 2016, In: Metabolic Engineering. 35, p. 31-37 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Engineering soluble insect and plant cytochromes P450 for biochemical characterization

    Jensen, M. K., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    Evolution of NADPH-cytochrome P450 oxidoreductases (POR) in Apiales - POR 1 is missing

    Andersen, T. B., Hansen, N. B., Laursen, Tomas, Weitzel, C. & Simonsen, H. T., 2016, In: Molecular Phylogenetics and Evolution. 98, p. 21-28 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Expanding the landscape of diterpene structural diversity by stereochemically controlled combinatorial biosynthesis

    Andersen-Ranberg, Johan, Kongstad, Kenneth Thermann, Nielsen, M. T., Bjerg Jensen, N., Pateraki, Irini, Bach, S. S., Hamberger, B., Zerbe, P., Stærk, Dan, Bohlmann, J., Møller, Birger Lindberg & Hamberger, B. R., 2016, In: Angewandte Chemie International Edition. 55, 6, p. 2142-2146 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Extending the biosynthetic repertoires of cyanobacteria and chloroplasts

    Nielsen, A. J. Z., Mellor, Silas Busck, Vavitsas, K., Wlodarczyk, A. J., Gnanasekaran, Thiyagarajan, Perestrello Ramos H de Jesus, M., King, B. C., Bakowski, K. & Jensen, Poul Erik, 2016, In: Plant Journal. 87, 1, p. 87-102 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Functional expression and characterization of plant ABC transporters in Xenopus laevis oocytes for transport engineering purposes

    Xu, Deyang, Veres, D., Belew, Zeinu Mussa, Olsen, C. E., Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2016, Synthetic biology and metabolic engineering in plants and microbes : Part B: Plant metabolism. p. 207-224 8 p. (Methods in Enzymology, Vol. 576).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  40. Published

    Fusion of ferredoxin and cytochrome P450 enables direct light-driven biosynthesis

    Mellor, Silas Busck, Nielsen, A. J. Z., Burow, Meike, Motawie, Mohammed Saddik, Jakubauskas, D., Møller, Birger Lindberg & Jensen, Poul Erik, 2016, In: ACS chemical biology. 11, 7, p. 1862-1869 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    General and stereocontrolled approach to the chemical synthesis of naturally occurring cyanogenic glucosides

    Møller, Birger Lindberg, Olsen, C. E. & Motawie, Mohammed Saddik, 2016, In: Journal of Natural Products. 79, 4, p. 1198-1202 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Glucosinolate diversity within a phylogenetic framework of the tribe Cardamineae (Brassicaceae) unraveled with HPLC-MS/MS and NMR-based analytical distinction of 70 desulfoglucosinolates

    Olsen, C. E., Huang, X., Hansen, Cecilie Ida Cetti, Cipollini, D., Ørgaard, Marian, Matthes, A., Geu-Flores, Fernando, Koch, M. A. & Agerbirk, Niels, 2016, In: Phytochemistry. 132, p. 33-56 24 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    HPLC-SPE-NMR for combinatorial biosynthetic investigations – expanding the landscape of diterpene structural diversity

    Kongstad, Kenneth Thermann, Andersen-Ranberg, Johan, Hamberger, B. R. & Stærk, Dan, 2016. 1 p.

    Research output: Contribution to conference › Poster › Research

  44. Published

    High throughput screening of starch structures using carbohydrate microarrays

    Tanackovic, V., Rydahl, M. G., Pedersen, H. L., Motawie, Mohammed Saddik, Shaik, S. S., Mikkelsen, M. D., Jensen, S. L., Fangel, J. U., Willats, W. G. T. & Blennow, Andreas, 2016, In: Scientific Reports. 6, 9 p., 30551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    High-resolution PTP1B inhibition profiling combined with high-performance liquid chromatography - high-resolution mass spectrometry - solid-phase extraction - nuclear magnetic resonance spectroscopy: Proof-of-concept and antidiabetic constituents in crude extract of Eremophila lucida

    Tahtah, Y., Wubshet, S. G., Kongstad, Kenneth Thermann, Heskes, A. M., Pateraki, Irini, Møller, Birger Lindberg, Jäger, A. & Stærk, Dan, 2016, In: Fitoterapia. 110, p. 52-58 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Identification and characterization of the iridoid synthase involved in oleuropein biosynthesis in olive (Olea europaea) fruits

    Alagna, F., Geu-Flores, Fernando, Kries, H., Panara, F., Baldoni, L., O'Connor, S. E. & Osbourn, A., 2016, In: Journal of Biological Chemistry. 291, 11, p. 5542-5554 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Identification of PTP1B and α-glucosidase inhibitory serrulatanes from Eremophila spp. by combined use of dual high-resolution PTP1B and α-glucosidase inhibition profiling and HPLC-HRMS-SPE-NMR

    Wubshet, S. G., Tahtah, Y., Heskes, A. M., Kongstad, Kenneth Thermann, Pateraki, Irini, Hamberger, B. R., Møller, Birger Lindberg & Stærk, Dan, 2016, In: Journal of Natural Products. 79, 4, p. 1063-1072 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Identification of circular RNAs from the parental genes involved in multiple aspects of cellular metabolism in barley

    Darbani Shirvanehdeh, B., Noeparvar, S. & Borg, S., 2016, In: Frontiers in Plant Science. 7, 8 p., 776.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Insight into biochemical characterization of plant sesquiterpene synthases

    Manczak, T. & Simonsen, H. T., 2016, In: Analytical Chemistry Insights. 11, Suppl. 1, p. 1-7 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Lepidopteran defence droplets - a composite physical and chemical weapon against potential predators

    Pentzold, S., Zagrobelny, Mika, Khakimov, Bekzod, Engelsen, Søren Balling, Clausen, Henrik, Petersen, Bent L, Borch, J., Møller, Birger Lindberg & Bak, Søren, 2016, In: Scientific Reports. 6, 11 p., 22407 .

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Links of conformational sampling to functional plasticity and clinical phenotypes by single molecule studies

    Moses, M. E., Thodberg, S., Bavishi, K., Eiersholt, S., Li, D., Stamou, Dimitrios, Møller, Birger Lindberg, Laursen, Tomas & Hatzakis, Nikos, 2016, In: Biophysical Society. Annual Meeting. Abstracts. 110, 3, p. 397A 1 p.

    Research output: Contribution to journal › Conference abstract in journal › Research

  52. Published

    Locking-to-unlocking system is an efficient strategy to design DNA/silver nanoclusters (AgNCs) probe for human miRNAs

    Shah, P., Choi, S. W., Kim, H., Cho, S. K., Bhang, Y., Ryu, M. Y., Thulstrup, Peter Waaben, Bjerrum, Morten Jannik & Yang, S. W., 2016, In: Nucleic Acids Research. 44, 6, 11 p., e57.

    Research output: Contribution to journal › Journal article › Research › peer-review

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