Section for Plant Biochemistry

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  1. 2017
  2. Published

    Molecular mechanisms regulating flowering time in sweet cherry (Prunus avium L.)

    Ionescu, I. A., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 146 p.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    Occurrence and biogenesis of seco-triterpenoids: A focus on the biosynthetic pathway of α-onocerin in Ononis spinosa

    Almeida Robles, A. R., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Optimization of Agrobacterium-mediated transient expression of heterologous genes in spinach

    Cao, D. V., Pamplona, R. S., Kim, J., Oh, Y. K., Cho, S. K., Ahn, J., Yang, S. W., Riu, K. Z. & Boo, K. H., 2017, In: Plant Biotechnology Reports. 11, 6, p. 397-405 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Origin and evolution of transporter substrate specificity within the NPF family: [with Correction]

    Jørgensen, M. E., Xu, Deyang, Crocoll, C., Ernst, H. A., Ramírez, D., Motawie, Mohammed Saddik, Olsen, C. E., Mirza, Osman Asghar, Nour-Eldin, Hussam Hassan & Halkier, Barbara Ann, 2017, In: eLife. 6, 30 p., e19466.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Overcoming the plasticity of plant specialized metabolism for selective diterpene production in yeast

    Ignea, C., Athanasakoglou, A., Andreadelli, A., Apostolaki, M., Iakovides, M., Stephanou, E. G., Makris, A. M. & Kampranis, Sotirios, 2017, In: Scientific Reports. 7, 1, 11 p., 8855.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Protein Production Strategies for Gram-Positive Bacteria: An Approach for Cell Factories Optimization

    Ferro, R., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  8. Published

    Purification and characterisation of the yeast plasma membrane ATP binding cassette transporter Pdr11p

    Laub, K. R., Marek, M., Stanchev, L. D., Herrera, S. A., Kanashova, T., Bourmaud, A., Dittmar, G. & Pomorski, Thomas Guenther, 2017, In: PLOS ONE. 12, 9, 18 p., e0184236.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Quinoa seed coats as an expanding and sustainable source of bioactive compounds: an investigation of genotypic diversity in saponin profiles

    Ruiz, K. B., Khakimov, Bekzod, Engelsen, Søren Balling, Bak, Søren, Biondi, S. & Jacobsen, S., 2017, In: Industrial Crops and Products. 104, p. 156-163 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    RING E3 ligases: key regulatory elements are involved in abiotic stress responses in plants

    Cho, S. K., Ryu, M. Y., Kim, J. H., Hong, J. S., Oh, T. R., Kim, W. T. & Yang, S. W., 2017, In: B M B Reports. 50, 8, p. 393-400 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Reduction of antinutritional glucosinolates in Brassica oilseeds by mutation of genes encoding transporters

    Nour-Eldin, Hussam Hassan, Madsen, S. R., Engelen, S., Jørgensen, M. E., Olsen, C. E., Andersen, J. S., Seynnaeve, D., Verhoye, T., Fulawka, R., Denolf, P. & Halkier, Barbara Ann, 2017, In: Nature Biotechnology. 35, 4, p. 377-382 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Role of microProteins in controlling diverse biological pathways

    Dolde, U. M., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  13. Published

    Solar-Driven Synthesis of Bioactive Natural Products

    Møller, Birger Lindberg, 2017, In: Chemical Engineering Progress. 113, 4, p. 46-54

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Spatial analysis of root hemiparasitic shrubs and their hosts: a search for spatial signatures of above- and below-ground interactions [incl. Erratum]

    Dueholm, B., Bruce, D., Weinstein, P., Semple, S., Møller, Birger Lindberg & Weiner, Jacob, 2017, In: Plant Ecology. 218, 2, p. 185-196 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of Zygaena larvae facilitates cyanide release

    Pentzold, S., Jensen, M. K., Matthes, A., Olsen, C. E., Petersen, Bent L, Clausen, Henrik, Møller, Birger Lindberg, Bak, Søren & Zagrobelny, Mika, 2017, In: Royal Society Open Science. 4, 13 p., 170262.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Stable Production of the Antimalarial Drug Artemisinin in the Moss Physcomitrella patens

    Khairul Ikram, N. K. B., Beyraghdar Kashkooli, A., Peramuna, A. V., van der Krol, A. R., Bouwmeester, H. & Simonsen, H. T., 2017, In: Frontiers in Bioengineering and Biotechnology. 5, 8 p., 47.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Sunlight-driven environmental benign production of bioactive natural products with focus on diterpenoids and the pathways involved in their formation

    Luo, Dan, Møller, Birger Lindberg & Pateraki, Irini, 2017, In: Chimia. 71, 12, p. 851-858 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Synthesis of C-glucosylated octaketide anthraquinones in Nicotiana benthamiana using a multispecies-based biosynthetic pathway

    Andersen-Ranberg, Johan, Kongstad, Kenneth Thermann, Nafisi, M., Stærk, Dan, Okkels, F. T., Mortensen, U. H., Møller, Birger Lindberg, Frandsen, R. J. N. & Kannangara, R. M., 2017, In: ChemBioChem. 18, 19, p. 1893-1897 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Terpenoid pathway discovery in Tripterygium wilfordii: A Chinese medicinal plant

    Hansen, N. L., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  20. Published

    The CYP79A1 catalyzed conversion of tyrosine to (E)-p-hydroxyphenylacetaldoxime unravelled using an improved method for homology modeling

    Vazquez Albacete, D., Montefiori, M., Kol, S., Motawie, Mohammed Saddik, Møller, Birger Lindberg, Olsen, L. & Nørholm, M. H. H., 2017, In: Phytochemistry. 135, p. 8-17 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    The evolution of chemical defenses in passion vine butterflies: biosynthesis, sequestration, and functional diversification of cyanogenicglucosides in Heliconius

    Pinheiro de Castro, É. C., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

    Byrne, S. L., Erthmann, P. Ø., Agerbirk, Niels, Bak, Søren, Hauser, T. P., Nagy, I., Paina, C. & Asp, T., 2017, In: Scientific Reports. 7, 14 p., 40728.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    The shady side of leaf development: the role of the REVOLUTA/KANADI1 module in leaf patterning and auxin-mediated growth promotion

    Merelo, P., Botterweg Paredes, E., Heisler, M. G. & Wenkel, Stephan, 2017, In: Current Opinion in Plant Biology. 35, p. 111-116 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The terpene synthase gene family in Tripterygium wilfordii harbors a labdane-type diterpene synthase among the monoterpene synthase TPS-b subfamily

    Hansen, N. L., Heskes, A. M., Hamberger, B., Olsen, C. E., Hallström, B. M., Andersen-Ranberg, Johan & Hamberger, B. R., 2017, In: The Plant Journal. 89, 3, p. 429-441 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Total biosynthesis of the cyclic AMP booster forskolin from Coleus forskohlii

    Pateraki, Irini, Andersen-Ranberg, Johan, Jensen, N. B., Wubshet, S. G., Heskes, A. M., Forman, Victor, Hallström, B., Hamberger, B., Motawie, Mohammed Saddik, Olsen, C. E., Stærk, Dan, Hansen, J., Møller, Birger Lindberg & Hamberger, B. R., 2017, In: eLife. 6, 28 p., e23001.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Transcript profiling of a bitter variety of narrow-leafed lupin to discover alkaloid biosynthetic genes

    Yang, T., Nagy, I., Mancinotti, Davide, Otterbach, S. L., Andersen, T. B., Motawie, Mohammed Saddik, Asp, T. & Geu-Flores, Fernando, 2017, In: Journal of Experimental Botany. 68, 20, p. 5527-5537 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Transcriptome and metabolite changes during hydrogen cyanamide-induced floral bud break in sweet cherry

    Ionescu, I. A., Lopez-Ortega, G., Burow, Meike, Bayo-Canha, A., Junge, A., Gericke, Oliver, Møller, Birger Lindberg & Sánchez Pérez, R., 2017, In: Frontiers in Plant Science. 8, 17 p., 1233.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Triterpenoid Saponin Biosynthesis in the non-model Crucifer Plant Barbares Vulgaris: Gene Discovery Genome Assembly, and Tranformation

    Erthmann, P. Ø., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  29. Published

    Two residues determine the product profile of the class II diterpene synthases TPS14 and TPS21 of Tripterygium wilfordii

    Hansen, N. L., Nissen, J. N. & Hamberger, B. R., 2017, In: Phytochemistry. 138, p. 52-56 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Whole genome analysis of a schistosomiasis-transmitting freshwater snail

    Adema, C. M., Hillier, L. W., Jones, C. S., Loker, E. S., Knight, M., Minx, P., Oliveira, G. D., Raghavan, N., Shedlock, A., do Amaral, L. R., Arican-Goktas, H. D., Assis, J. G., Baba, E. H., Baron, O. L., Bayne, C. J., Bickham-Wright, U., Biggar, K. K., Blouin, M., Bonning, B. C., Botka, C. & 97 others, Bridger, J. M., Buckley, K. M., Buddenborg, S. K., Lima Caldeira, R., Carleton, J., Carvalho, O. S., Castillo, M. G., Chalmers, I. W., Christensens, M., Clifton, S. W., Cosseau, C., Coustau, C., Cripps, R. M., Cuesta-Astroz, Y., Cummins, S. F., di Stephano, L., Dinguirard, N., Duval, D., Emrich, S., Feschotte, C., Feyereisen, R., FitzGerald, P., Fronick, C., Fulton, L., Galinier, R., Gava, S. G., Geusz, M., Geyer, K. K., Giraldo-Calderón, G. I., de Souza Gomes, M., Gordy, M. A., Gourbal, B., Grunau, C., Hanington, P. C., Hoffmann, K. F., Hughes, D. S. T., Humphries, J., Jackson, D. J., Jannotti-Passos, L. K., de Jesus Jeremias, W., Jobling, S., Kamel, B., Kapusta, A., Kaur, S., Koene, J. M., Kohn, A. B., Lawson, D., Lawton, S. P., Liang, D., Limpanont, Y., Liu, S., Lockyer, A. E., Lovato, T. L., Ludolf, F., Magrini, V., McManus, D. P., Medina, M., Misra, M., Mitta, G., Mkoji, G. M., Montague, M. J., Montelongo, C., Moroz, L. L., Munoz-Torres, M. C., Niazi, U., Noble, L. R., Oliveira, F. S., Pais, F. S., Papenfuss, A. T., Peace, R., Pena, J. J., Pila, E. A., Quelais, T., Raney, B. J., Rast, J. P., Rollinson, D., Rosse, I. C., Rotgans, B., Routledge, E. J., Ryan, K. M., Scholte, L. L. S., Storey, K. B., Swain, M., Tennessen, J. A., Tomlinson, C., Trujillo, D. L., Volpi, E. V., Walker, A. J., Wang, T., Wannaporn, I., Warren, W. C., Wu, X., Yoshino, T. P., Junaid Yusuf, M., Zhang, S., Zhao, M. & Wilson, R. K., 2017, In: Nature Communications. 8, 11 p., 15451.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    The versatility of the mitochondrial presequence processing machinery: cleavage, quality control and turnover

    Poveda Huertes, Daniel, Mulica, P. & Vögtle, F. N., Jan 2017, In: Cell and Tissue Research. 367, 1, p. 73-81 9 p.

    Research output: Contribution to journal › Review › Research › peer-review

  32. Published

    Biogenesis of the mitochondrial DNA inheritance machinery in the mitochondrial outer membrane of Trypanosoma brucei

    Käser, S., Willemin, M., Schnarwiler, F., Schimanski, B., Poveda Huertes, Daniel, Oeljeklaus, S., Haenni, B., Zuber, B., Warscheid, B., Meisinger, C. & Schneider, A., Dec 2017, In: PLoS Pathogens. 13, 12, p. e1006808

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. 2018
  34. Published

    A Combinatorial Approach To Study Cytochrome P450 Enzymes for De Novo Production of Steviol Glucosides in Baker’s Yeast

    Gold, N. D., Fossati, E., Hansen, Cecilie Ida Cetti, DiFalco, M., Douchin, V. & Martin, V. J. J., 2018, In: A C S Synthetic Biology. 7, 12, p. 2918-2929

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation

    Achkar, N. P., Cho, S. K., Poulsen, C., Arce, A. L., Re, D. A., Giudicatti, A. J., Karayekov, E., Ryu, M. Y., Choi, S. W., Harholt, J., Casal, J. J., Yang, S. W. & Manavella, P. A., 2018, In: Developmental Cell. 46, 2, p. 236-247, e1-e6 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A Single Oxidosqualene Cyclase Produces the Seco-Triterpenoid α-Onocerin

    Almeida, A., Dong, L., Khakimov, Bekzod, Bassard, J. A., Moses, T., Lota, F., Goossens, A., Appendino, G. & Bak, Søren, 2018, In: Plant Physiology. 176, 2, p. 1469-1484 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A synbio approach for selection of highly expressed gene variants in Gram-positive bacteria

    Ferro, R., Rennig, M., Hernandez-Rollán, C., Daley, D. O. & Nørholm, M. H. H., 2018, In: Microbial Cell Factories. 17, 11 p., 37.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A tandem array of UDP-glycosyltransferases from the UGT73C subfamily glycosylate sapogenins, forming a spectrum of mono- and bisdesmosidic saponins

    Erthmann, P. Ø., Agerbirk, Niels & Bak, Søren, 2018, In: Plant Molecular Biology. 97, 1-2, p. 37-55 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Approaches to identify and characterize microProteins and their potential uses in biotechnology

    Bhati, K. K., Blaakmeer, A. S., Botterweg Paredes, E., Dolde, U. M., qmd783, qmd783, Hong, S., Rodrigues, V. L., Straub, D., Sun, B. & Wenkel, Stephan, 2018, In: Cellular and Molecular Life Sciences. 75, 14, p. 2529-2536

    Research output: Contribution to journal › Review › Research › peer-review

  40. Published

    BacHBerry: BACterial hosts for production of bioactive phenolics from bERRY fruits

    Dudnik, A., Almeida, A. F., Andrade, R., Avila, B., Bañados, P., Barbay, D., Bassard, J-É. A., Benkoulouche, M., Bott, M., Braga, A., Breitel, D., Brennan, R., Bulteau, L., Chanforan, C., Costa, I., Costa, R. S., Doostmohammadi, M., Faria, N., Feng, C., Fernandes, A. & 30 others, Ferreira, P., Ferro, R., Foito, A., Freitag, S., Garcia, G., Gaspar, P., Godinho-Pereira, J., Hamberger, B. R., Hartmann, A., Heider, H., Jardim, C., Julien-Laferriere, A., Kallscheuer, N., Kerbe, W., Kuipers, O. P., Li, S., Love, N., Marchetti-Spaccamela, A., Marienhagen, J., Martin, C., Mary, A., Mazurek, V., Meinhart, C., Sevillano, D. M., Menezes, R., Naesby, M., Nørholm, M. H. H., Okkels, F. T., Stahlhut, S. G. & Vogt, M., 2018, In: Phytochemistry Reviews. 17, 2, p. 291-326 36 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Biological activity and LC-MS/MS profiling of extracts from the Australian medicinal plant Acacia ligulata (Fabaceae)

    Knudsen, D. J., Simpson, B. S., Ndi, C. P., Jäger, A., Crocoll, C., Møller, Birger Lindberg, Weinstein, P. & Semple, S. J., 2018, In: Natural Product Research. 32, 5, p. 576-581 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Biosynthesis of angelyl-CoA in Saccharomyces cerevisiae

    Callari, R., Fischer, D., Heider, H. & Weber, N., 2018, In: Microbial Cell Factories. 17, 14 p., 72.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Biosynthesis of bioactive diterpenoids in the medicinal plant Vitex agnus-castus

    Heskes, A., Sundram, T. C. M., Boughton, B. A., Bjerg Jensen, N., Hansen, N. L., Crocoll, C., Cozzi, F., Rasmussen, Simon, Hamberger, B., Hamberger, B. R., Stærk, Dan, Møller, Birger Lindberg & Pateraki, Irini, 2018, In: Plant Journal. 93, p. 943-958 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Biosynthesis of eupatolide - a metabolic route for sesquiterpene lactone formation involving the P450 enzyme CYP71DD6

    Frey, M., Schmauder, K., Pateraki, Irini & Spring, O., 2018, In: ACS chemical biology. 13, 6, p. 1536-1543

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    CYP6AE gene cluster knockout in Helicoverpa armigera reveals role in detoxification of phytochemicals and insecticides

    Wang, H., Shi, Y., Wang, L., Liu, S., Wu, S., Yang, Y., Feyereisen, R. & Wu, Y., 2018, In: Nature Communications. 9, p. 1-8 4820.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Co-expression of squalene epoxidases with triterpene cyclases boosts production of triterpenoids in plants and yeast

    Dong, L., Pollier, J., Bassard, J., Ntallas, G., Almeida, A., Lazaridi, E., Khakimov, Bekzod, Arendt, P., de Oliveira, L. S., Lota, F., Goossens, A., Michoux, F. & Bak, Søren, 2018, In: Metabolic Engineering. 49, p. 1-12

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Counting the costs: nitrogen partitioning in Sorghum mutants

    Blomstedt, C. K., Rosati, V. C., Møller, Birger Lindberg & Gleadow, R., 2018, In: Functional Plant Biology. 45, 7, p. 705-718

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Cutting edges and weaving threads in the gene editing (Я)evolution: reconciling scientific progress with legal, ethical, and social concerns

    Nordberg, A., Minssen, Timo, Holm, Sune Hannibal, Horst, M., Mortensen, Kell & Møller, Birger Lindberg, 2018, In: Journal of Law and the Biosciences . 5, 1, p. 35-83 49 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Cyanogenesis in arthropods: from chemical warfare to nuptial gifts

    Zagrobelny, Mika, Pinheiro de Castro, É. C., Møller, Birger Lindberg & Bak, Søren, 2018, In: Insects. 9, 2, 39 p., 51.

    Research output: Contribution to journal › Review › Research › peer-review

  50. Published

    Direct observation of multiple conformational states in Cytochrome P450 oxidoreductase and their modulation by membrane environment and ionic strength

    Bavishi, K., Li, D., Eiersholt, S., Hooley, E. N., Petersen, Troels Christian, Møller, Birger Lindberg, Hatzakis, Nikos & Laursen, Tomas, 2018, In: Scientific Reports. 8, 9 p., 6817.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Diurnal regulation of cyanogenic glucoside biosynthesis and endogenous turnover in cassava

    Schmidt, F. B., Cho, S. K., Olsen, C. E., Yang, S. W., Møller, Birger Lindberg & Jørgensen, K., 2018, In: Plant Direct. 2, 2, p. 1-9 e00038.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Does host plant adaptation lead to pesticide resistance in generalist herbivores?

    Dermauw, W., Pym, A., Bass, C., Van Leeuwen, T. & Feyereisen, R., 2018, In: Current Opinion in Insect Science. 26, p. 25-33

    Research output: Contribution to journal › Review › Research › peer-review

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