Lars Hestbjerg Hansen
Professor
Microbial Ecology and Biotechnology
Thorvaldsensvej 40
1871 Frederiksberg C
- 2024
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cessation of grazing causes biodiversity loss and homogenization of soil food webs
Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice
Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Danielsen, M. R., Jakobsen, Rasmus Riemer, Zachariassen, L. S. F., Castro Mejia, J. L., Brunse, Anders, Hansen, Lars Hestbjerg, Hansen, Camilla Hartmann Friis, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2023, In: Gut Microbes. 15, 1, 21 p., 2208504.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four novel Curtobacterium phages isolated from environmental samples
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pheno- and Genotyping of Three Novel Bacteriophage Genera That Target a Wheat Phyllosphere Sphingomonas Genus
Riber, Leise, Carstens, Alexander Byth, Dougherty, Peter Erdmann, Roy, C., Willenbücher, K., Hille, F., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2023, In: Microorganisms. 11, 7, 17 p., 1831.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pruning Wound Protection Products Induce Alterations in the Wood Mycobiome Profile of Grapevines
Del Frari, G., Aggerbeck, M. R., Gobbi, Alex, Ingrà, C., Volpi, L., Nascimento, T., Ferrandino, A., Hansen, Lars Hestbjerg & Ferreira, R. B., 2023, In: Journal of Fungi. 9, 4, 20 p., 488.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity
Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three novel Erwinia billingiae phages isolated from organic waste represent three new genera
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Kot, Witold & Hansen, Lars Hestbjerg, 2023, In: Archives of Virology. 168, 7 p., 71.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
Dougherty, Peter Erdmann, Nielsen, Tue Kjærgaard, Riber, Leise, Lading, H. H., Forero Junco, Laura Milena, Kot, Witold, Raaijmakers, J. M. & Hansen, Lars Hestbjerg, 2023, In: ISME Journal. 17, 12, p. 2415-2425Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs
Gobbi, Alex, Acedo, A., Imam, N., Santini, R. G., Ortiz-Alvarez, R., Ellegaard-Jensen, L., Belda, I. & Hansen, Lars Hestbjerg, 2022, In: Communications Biology . 5, 9 p., 241.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
Nielsen, Tue Kjærgaard, Browne, Patrick Denis & Hansen, Lars Hestbjerg, 2022, In: GigaScience. 11, 17 p., giac072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue
Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment
Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination
Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic, Phenotypic and Metabolic Diversity of Yeasts From Wheat Flag Leaves
Gouka, L., Vogels, C., Hansen, Lars Hestbjerg, Raaijmakers, J. M. & Cordovez, V., 2022, In: Frontiers in Plant Science. 13, 13 p., 908628.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles
Castro-Mejía, J. L., Khakimov, Bekzod, Aru, Violetta, Lind, M. V., Ahlmann, Eva Garne, Paulová, P., Tavakkoli, E., Hansen, Lars Hestbjerg, Smilde, Age Klaas, Holm, L., Engelsen, Søren Balling & Nielsen, Dennis Sandris, 2022, In: Microorganisms. 10, 11, 2156.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Term Safety Following Faecal Microbiota Transplantation as a Treatment for Recurrent Clostridioides difficile Infection Compared with Patients Treated with a Fixed Bacterial Mixture: Results from a Retrospective Cohort Study
Cold, F., Svensson, C. K., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Cells. 11, 3, 18 p., 435.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Machine learning and deep learning applications in microbiome research
Hernandez Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads & Rasmussen, Simon, 2022, In: ISME Communications. 2, 7 p., 98.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Muskoxen homogenise soil microbial communities and affect the abundance of methanogens and methanotrophs
Aggerbeck, M. R., Nielsen, Tue Kjærgaard, Mosbacher, J. B., Schmidt, N. M. & Hansen, Lars Hestbjerg, 2022, In: Science of the Total Environment. 827, 9 p., 153877.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Salmonella phage akira, infecting selected Salmonella enterica Enteritidis and Typhimurium strains, represents a new lineage of bacteriophages
Olsen, Nikoline S., Lametsch, Rene, Wagner, N., Hansen, Lars Hestbjerg & Kot, Witold, 2022, In: Archives of Virology. 167, p. 2049–2056Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Successful treatment of Clostridioidesdifficile infection with single-donor faecal microbiota transplantation capsules
Cold, F., Svensson, C. K., Christensen, A. H., Günther, S., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Danish Medical Journal. 69, 2, 10 p., 09210712.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Successful treatment of Clostridioidesdifficile infection with single-donorfaecal microbiota transplantation capsules
Cold, F., Svensson, C. K., Günther, S., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Danish Medical Journal. 69, 2, 10 p., A09210712.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Bacillus cereus Strain EC9 Primes the Plant Immune System for Superior Biocontrol of Fusarium oxysporum
Madriz Ordenana, Kenneth, Pazarlar, S., Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Zhang, Y., Nielsen, K. L., Hansen, Lars Hestbjerg & Thordal-Christensen, Hans, 2022, In: Plants. 11, 5, 19 p., 687.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)
Garcia-Lemos, A. M., Hennessy, Rosanna Catherine, Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology Resource Announcements. 10, 8, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18
Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Browne, Patrick Denis, Cold, F., Petersen, Andreas Munk, Halkjær, S. I., Christensen, A. H., Günther, S. & Hansen, Lars Hestbjerg, 2021, In: Gut Microbes. 13, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae
Olsen, Nikoline S., Nielsen, K. J., Plöger, M., Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Archives of Virology. 166, p. 593-599 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic Memories: The Hidden Drivers of Bacterial Persistence?
Riber, Leise & Hansen, Lars Hestbjerg, 2021, In: Trends in Microbiology. 29, 3, p. 190-194 5 p.Research output: Contribution to journal › Editorial › Research
- Published
Extension of Plant Phenotypes by the Foliar Microbiome
Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson, J. F., Castellani, L. G., Draghi, W. O., Mogro, E. G., Wibberg, D., Winkler, A., Hansen, Lars Hestbjerg, Schluüter, A., Puühler, A., Kalinowski, J., Tejerizo, G. A. T. & Pistorio, M., 2021, In: FEMS Microbiology Ecology. 97, 1, fiaa235.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cyriaque, V., Madsen, Jonas Stenløkke, Fievez, L., Leroy, B., Hansen, Lars Hestbjerg, Bureau, F., Sørensen, Søren Johannes & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms
Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay
Alanin, K. W. S., Forero Junco, Laura Milena, Jørgensen, J. B., Nielsen, Tue Kjærgaard, Rasmussen, Morten Arendt, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Viruses. 13, 6, 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis
Braga, L. P. P., Coutinho, F. H., Amgarten, D. E., Kot, Witold, Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2021, In: Environmental Microbiology Reports. 13, 3, p. 348-354 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pre-clinical evaluation of the effect of co-medication with antibiotics and oral steroids in Gottingen Minipigs on the biological activity of the probiotic medicinal product TSO (Trichuris suis ova)
Prosberg, M. V., Kringel, H., Kapel, J. S., Kapel, B. S., Fredensborg, Brian Lund, Petersen, Andreas Munk, Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Kapel, H. S., Jacobsen, K. R., Mikkelsen, L. F. & Kapel, Christian, 2021, In: Parasitology Research. 120, p. 743-746Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematic review with meta-analysis: encapsulated faecal microbiota transplantation - evidence for clinical efficacy
Cold, F., Baunwall, S. M. D., Dahlerup, J. F., Petersen, Andreas Munk, Hvas, C. L. & Hansen, Lars Hestbjerg, 2021, In: Therapeutic Advances in Gastroenterology. 14, 19 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The aerobiome uncovered: Multi-marker metabarcoding reveals potential drivers of turn-over in the full microbial community in the air
de Groot, G. A., Geisen, S., Wubs, E. R. J., Meulenbroek, L., Laros, I., Snoek, L. B., Lammertsma, D. R., Hansen, Lars Hestbjerg & Slim, P. A., 2021, In: Environment International. 154, 106551.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Nielsen, Tue Kjærgaard, Horemans, B., Lood, C., T’Syen, J., van Noort, V., Lavigne, R., Ellegaard-Jensen, L., Hylling, Ole, Aamand, J., Springael, D. & Hansen, Lars Hestbjerg, 2021, In: Scientific Reports. 11, 12 p., 18943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of faecal microbiota transplantation on abdominal pain, stool frequency, and stool form in patients with moderate-to-severe irritable bowel syndrome: results from a randomised, double-blind, placebo-controlled study
Madsen, A. M. A., Halkjaer, S. I., Christensen, A. H., Guenther, S., Browne, Patrick Denis, Kallemose, T., Hansen, Lars Hestbjerg & Petersen, Andreas Munk, 2021, In: Scandinavian Journal of Gastroenterology. 56, 7, p. 761-769 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The gut microbiome and abiotic factors as potential determinants of postprandial glucose responses: A single-arm meal study
Nestel, N., Hvass, J. D., Bahl, M. I., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Dragsted, Lars Ove & Roager, Henrik Munch, 2021, In: Frontiers in Nutrition. 7, 9 p., 594850.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina
Julia Estrella, M., Florencia Fontana, M., Cumpa Velasquez, L. M., Torres Tejerizo, G. A., Diambra, L., Hansen, Lars Hestbjerg, Pistorio, M. & Ines Sannazzaro, A., 2020, In: Systematic and Applied Microbiology. 43, 1, 8 p., 126044.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential
Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus
Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bioaugmented Sand Filter Columns Provide Stable Removal of Pesticide Residue From Membrane Retentate
Ellegaard-Jensen, L., Schostag, M. D., Fini, M. N., Badawi, N., Gobbi, Alex, Aamand, J. & Hansen, Lars Hestbjerg, 2020, In: Frontiers in Water. 2, 13 p., 603567.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community
Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom
Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs
Kot, Witold, Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, Alexander Byth, Moineau, S., Swairjo, M. A. & Hansen, Lars Hestbjerg, 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment
Olsen, Nikoline S., Forero Junco, Laura Milena, Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: Viruses. 12, 9, 21 p., 986.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model
Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Kot, Witold, Castro-Mejiá, J. L., Zuffa, S., Swann, J. R., Hansen, Lars Hestbjerg, Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2020, In: Gut. 69, 12, p. 2122-2130 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fecal Microbiota Transplantation in the Treatment of Chronic Pouchitis: A Systematic Review
Cold, F., Kousgaard, S. J., Halkjaer, S. I., Petersen, Andreas Munk, Nielsen, H. L., Thorlacius-Ussing, O. & Hansen, Lars Hestbjerg, 2020, In: Microorganisms. 8, 9, 17 p., 1433.Research output: Contribution to journal › Review › Research › peer-review
- Published
Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, Tina Vicky Alstrup, Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In: The Journal of Immunology. 204, 11, p. 3042-3055 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios
Braga, L. P. P., Spor, A., Kot, Witold, Breuil, M., Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2020, In: Microbiome. 8, 1, 14 p., 52.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Aguilar, M. O., Gobbi, Alex, Browne, Patrick Denis, Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Semorile, L. & Pistorio, M., 2020, In: PLoS ONE. 15, 12, 19 p., 0243848.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats
Thøgersen, R., Castro-Mejía, J. L., Sundekilde, U. K., Hansen, Lars Hestbjerg, Gray, N., Kuhnle, G., Jørgensen, Niklas Rye, Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2020, In: Food Chemistry. 331, 10 p., 127291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus"
Kyrkou, I., Carstens, Alexander Byth, Ellegaard-Jensen, L., Kot, Witold, Zervas, A., Djurhuus, Amaru Miranda, Neve, H., Franz, C. M. A. P., Hansen, M. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 10 p., 8763.Research output: Contribution to journal › Journal article › Research › peer-review
Land use as a driver for protist community structure in soils under agricultural use across Europe
Santos, S. S., Schöler, A., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg, Schloter, M. & Winding, A., 2020, In: Science of the Total Environment. 717, 137228.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function: [incl. Erratum]
Reddington, K., Eccles, D., O'Grady, J., Drown, D. M., Hansen, L. H., Nielsen, T. K., Ducluzeau, A-L., Leggett, R. M., Heavens, D., Peel, N., Snutch, T. P., Bayega, A., Oikonomopoulos, S., Ragoussis, J., Barry, T., van der Helm, E., Jolic, D., Richardson, H., Jansen, H., Tyson, J. R. & 2 others, , 2020, In: GigaScience. 9, 6, 12 p., 053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiota in foods from Inuit traditional hunting
Hauptmann, A. L., Paulová, P., Hansen, Lars Hestbjerg, Sicheritz-Pontén, Thomas, Mulvad, G. & Nielsen, Dennis Sandris, 2020, In: PLoS ONE. 15, 1, 15 p., e0227819.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae
Pedersen, Julie Stenberg, Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold, Neve, H. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 237-244 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures
Castro-Mejia, J. L., Khakimov, B., Krych, L., Bülow, J., Bechshøft, R. L., Højfeldt, G., Mertz, K. H., Garne, E. S., Schacht, S. R., Ahmad, H. F., Kot, W., Hansen, L. H., Perez-Cueto, F. J. A., Lind, M. V., Lassen, A. J., Tetens, I., Jensen, T., Reitelseder, S., Jespersen, A. P., Holm, L. & 2 others, , 2020, In: Aging Cell. 19, 3, 13 p., e13105.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier
Zeng, Y., Chen, X., Madsen, A. M., Zervas, A., Nielsen, Tue Kjærgaard, Andrei, A., Lund-Hansen, L. C., Liu, Y. & Hansen, Lars Hestbjerg, 2020, In: mBio. 11, 6, 22 p., e02641-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Presentation of Three Novel Tailed Phages Targeting Multiple Strains of Pseudomonas syringae
Jørgensen, J. B., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Kot, Witold, Neve, H., Morris, C. E. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 245-250 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling
Eriksen, A. M. H., Puetz, Lara Christine, Rocha, C., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2020, In: STAR: Science & Technology of Archaeological Research. 6, 1, p. 1-15 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
Gobbi, Alex, Kyrkou, I., Filippi, E., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 13 p., 681.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements
Browne, Patrick Denis, Kot, Witold, Jørgensen, T. S. & Hansen, Lars Hestbjerg, 2020, Horizontal Gene Transfer: Methods and Protocols. Cruz, F. D. L. (ed.). Humana Press, p. 253-264 (Methods in Molecular Biology, Vol. 2075).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae
Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Neve, H., Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 251-259 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology
Hylling, O., Carstens, Alexander Byth, Kot, Witold, Hansen, M., Neve, H., Franz, C. M. A. P., Johansen, A., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development
Garcia-Lemos, A. M., Gobbi, Alex, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 17 p., 198.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation
Hylling, O., Nikbakht Fini, M., Ellegaard-Jensen, L., Muff, J., Madsen, H. T., Aamand, J. & Hansen, Lars Hestbjerg, 1 Dec 2019, In: Science of the Total Environment. 694, p. 1-12 133710.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp
Zervas, A., Zeng, Y., Madsen, A. M. & Hansen, Lars Hestbjerg, 1 Oct 2019, In: Genome Biology and Evolution. 11, 10, p. 2895-2908Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions
Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold & Hansen, Lars Hestbjerg, 1 May 2019, In: FEMS Microbiology Letters. 366, 9, p. 1-8 fnz101.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Multidonor FMT capsules improve symptoms and decrease fecal calprotectin in ulcerative colitis patients while treated - an open-label pilot study
Cold, F., Browne, Patrick Denis, Günther, S., Halkjaer, S. I., Petersen, Andreas Munk, Al-Gibouri, Z., Hansen, Lars Hestbjerg & Christensen, A. H., 4 Apr 2019, In: Scandinavian Journal of Gastroenterology. 54, 3, p. 289-296 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Characterization of the Wood Mycobiome of Vitis vinifera in a Vineyard Affected by Esca. Spatial Distribution of Fungal Communities and Their Putative Relation With Leaf Symptoms
Del Frari, G., Gobbi, Alex, Aggerbeck, M. R., Oliveira, H., Hansen, Lars Hestbjerg & Ferreira, R. B., 2019, In: Frontiers in Plant Science. 10, 19 p., 910.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2
Sher, S., Rehman, A., Hansen, Lars Hestbjerg & Nielsen, Tue Kjærgaard, 2019, In: Microbiology Resource Announcements. 8, 31, 2 p., e00531-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum - A Novel Lineage of Lactobacillus Phages Comprising Five New Members
Kyrkou, I., Carstens, Alexander Byth, Ellegaard-Jensen, L., Kot, Witold, Zervas, A., Djurhuus, Amaru Miranda, Neve, H., Hansen, M. & Hansen, Lars Hestbjerg, 2019, In: Viruses. 11, 7, 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
Fungicides and the Grapevine Wood Mycobiome: A Case Study on Tracheomycotic Ascomycete Phaeomoniella chlamydospora Reveals Potential for Two Novel Control Strategies
Del Frari, G., Gobbi, Alex, Aggerbeck, M. R., Oliveira, H., Hansen, Lars Hestbjerg & Ferreira, R. B., 2019, In: Frontiers in Plant Science. 10, 1405.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages
Alves, D. R., Nzakizwanayo, J., Dedi, C., Olympiou, C., Hanin, A., Kot, Witold, Hansen, Lars Hestbjerg, Lametsch, Rene, Gahan, C. G. M., Schellenberger, P., Ogilvie, L. A. & Jones, B. V., 2019, In: Frontiers in Microbiology. 10, p. 1-14 1783.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intra- and inter-field diversity of 2,4-dichlorophenoxyacetic acid-degradative plasmids and their tfd catabolic genes in rice fields of the Mekong delta in Vietnam
Nguyen, T. P. O., Hansen, M. A., Hansen, Lars Hestbjerg, Horemans, B., Sørensen, Søren Johannes, De Mot, R. & Springael, D., 2019, In: FEMS Microbiology Ecology. 95, 1, p. 1-11 fiy214.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mouse vendor influence on the bacterial and viral gut composition exceeds the effect of diet
Rasmussen, Torben Sølbeck, de Vries, L., Kot, Witold, Hansen, Lars Hestbjerg, Castro-Mejía, J. L., Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2019, In: Viruses. 11, 5, 15 p., 435.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multi-omics and potential applications in wine production
Sirén, K., Mak, Sarah Siu Tze, Fischer, U., Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2019, In: Current Opinion in Biotechnology. 56, p. 172-178Research output: Contribution to journal › Review › Research › peer-review
- Published
The Genome and mRNA Transcriptome of the Cosmopolitan Calanoid Copepod Acartia tonsa Dana Improve the Understanding of Copepod Genome Size Evolution
Jørgensen, T. S., Petersen, Bent, Petersen, H. C. B., Browne, Patrick Denis, Prost, S., Stillman, J. H., Hansen, Lars Hestbjerg & Hansen, B. W., 2019, In: Genome Biology and Evolution. 11, 5, p. 1440-1450Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Whole Genome Sequence and mRNA Transcriptome of the Tropical Cyclopoid Copepod Apocyclops royi
Jorgensen, T. S., Nielsen, B. L. H., Petersen, Bent, Browne, Patrick Denis, Hansen, B. W. & Hansen, Lars Hestbjerg, 2019, In: G3: Genes, Genomes, Genetics (Bethesda). 9, 5, p. 1295-1302Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples
Jacobsen, C. S., Nielsen, T. K., Vester, J. K., Stougaard, P., Nielsen, J. L., Voriskova, J., Winding, A., Baldrian, P., Liu, B., Frostegard, A., Pedersen, D., Tveit, A. T., Svenning, M. M., Tebbe, C. C., Ovreas, L., Jakobsen, P. B., Blazewicz, S. J., Hubablek, V., Bertilsson, S., Hansen, L. H. & 4 others, , 2018, In: Scientific Reports. 8, p. 1-6 6 p., 5711.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of exercise training and resveratrol supplementation on gut microbiota composition in high-fat diet fed mice
Brandt, N., Kotowska, D., Kristensen, C. M., Olesen, J., Lützhøft, Ditte Olsen, Halling, Jens Frey, Hansen, M., Al-Soud, W. A., Hansen, Lars Hestbjerg, Kiilerich, P. & Pilegaard, Henriette, 2018, In: Physiological Reports. 6, 20, p. 1-11 e13881.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Response of the bacterial community in an on-farm biopurification system, to which diverse pesticides are introduced over an agricultural season
Holmsgaard, P. N., Dealtry, S., Dunon, V., Heuer, H., Hansen, Lars Hestbjerg, Springael, D., Smalla, K., Riber, Leise & Sørensen, Søren Johannes, Oct 2017, In: Environmental Pollution. 229, p. 854-862 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Degradation of mecoprop in polluted landfill leachate and waste water in a moving bed biofilm reactor
Escolà Casas, M., Nielsen, Tue Kjærgaard, Kot, Witold, Hansen, Lars Hestbjerg, Johansen, A. & Bester, K., 2017, In: Water Research. 121, p. 213-220Research output: Contribution to journal › Journal article › Research › peer-review
Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH
Nielsen, Tue Kjærgaard, Rasmussen, M., Demanèche, S., Cecillon, S., Vogel, T. M. & Hansen, Lars Hestbjerg, 2017, In: Genome Biology and Evolution. 9, 9, p. 2477-2490Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plasmids, viruses, and other circular elements in rat gut
Jørgensen, T. S., Hansen, M. A., Xu, Z., Tabak, M. A., Sørensen, Søren Johannes & Hansen, Lars Hestbjerg, 2017, Cold Spring Harbor Laboratory Press, 30 p.Research output: Working paper › Research
- Published
The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages
Nielsen, Tue Kjærgaard, Carstens, A. B., Browne, P., Lametsch, Rene, Neve, H., Kot, Witold & Hansen, Lars Hestbjerg, 2017, In: Scientific Reports. 7, 10 p., 13566.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 4930
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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults
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Sequence and comparative analysis of Leuconostoc dairy bacteriophages
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Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria
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