Tue Kjærgaard Nielsen

Tue Kjærgaard Nielsen

Tenure Track Assistant Professor

ORCID: 0000-0001-6610-8450

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  1. Published

    GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

    Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Four novel Curtobacterium phages isolated from environmental samples

    Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

    Lorentzen, M. P., Campbell-Sills, H., Jorgensen, T. S., Nielsen, Tue Kjærgaard, Coton, M., Coton, E., Hansen, L. & Lucas, P. M., 2019, In: BMC Genomics. 20, 330.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH

    Nielsen, Tue Kjærgaard, Rasmussen, M., Demanèche, S., Cecillon, S., Vogel, T. M. & Hansen, Lars Hestbjerg, 2017, In: Genome Biology and Evolution. 9, 9, p. 2477-2490

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Establishment of Bacterial Herbicide Degraders in a Rapid Sand Filter for Bioremediation of Phenoxypropionate-Polluted Groundwater

    Feld, L., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg, Aamand, J. & Albers, C. N., 2016, In: Applied and Environmental Microbiology. 82, 3, p. 878-887

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Draft genome sequence of MCPA-degrading Sphingomonas sp. strain ERG5, isolated from a groundwater aquifer in Denmark

    Nielsen, Tue Kjærgaard, Kot, Witold, Sørensen, S. R. & Hansen, Lars Hestbjerg, 2015, In: Genome Announcements. 3, 1, 2 p., e01529-14.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds

    Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Draft Genome Sequence of Isoproturon-Mineralizing Sphingomonas sp. SRS2, Isolated from an Agricultural Field in the United Kingdom

    Nielsen, Tue Kjærgaard, Sørensen, S. R. & Hansen, Lars Hestbjerg, 2015, In: Genome Announcements. 3, 3, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs

    Kot, Witold, Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, Alexander Byth, Moineau, S., Swairjo, M. A. & Hansen, Lars Hestbjerg, 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software

    Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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