- Published
Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution
Agergaard, J., Zillmer, M. C. F., Castro-Mejía, J. L., Mertz, K., Kot, Witold, Højfeldt, Grith Stougaard, van Hall, Gerrit, Nielsen, Dennis Sandris, Schjerling, Peter & Holm, Lars Morten, 2021, In: Scientific Reports. 11, 15 p., 16423.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Muskoxen homogenise soil microbial communities and affect the abundance of methanogens and methanotrophs
Aggerbeck, M. R., Nielsen, Tue Kjærgaard, Mosbacher, J. B., Schmidt, N. M. & Hansen, Lars Hestbjerg, 2022, In: Science of the Total Environment. 827, 9 p., 153877.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Aguilar, M. O., Gobbi, Alex, Browne, Patrick Denis, Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Semorile, L. & Pistorio, M., 2020, In: PLoS ONE. 15, 12, 19 p., 0243848.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage
Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Carbone, I., Cornish, V., Müller-Stöver, Dorette Sophie, Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology Resource Announcements. 11, 11, 4 p., e0066322.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of heavy metals from pangasius and tilapia aquaculture in Bangladesh and human consumption risk
Ahsan, M. E., Islam, S. R., Razzak, M. A., Ali, M. L. & Haque, M. M., 2022, In: Aquaculture International. 30, 3, p. 1407-1434 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
14-3-3 proteins: a highly conserved, widespread family of eukaryotic proteins
Aitken, A., Collinge, David B., van Heusden, B. P. H., Isobe, T., Roseboom, P. H., Rosenfeld, G. & Soll, J., 1 Jan 1992, In: Trends in Biochemical Sciences. 17, 12, p. 498-501 4 p.Research output: Contribution to journal › Review › Research › peer-review
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay
Alanin, K. W. S., Forero Junco, Laura Milena, Jørgensen, J. B., Nielsen, Tue Kjærgaard, Rasmussen, Morten Arendt, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Viruses. 13, 6, 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four novel Curtobacterium phages isolated from environmental samples
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three novel Erwinia billingiae phages isolated from organic waste represent three new genera
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Kot, Witold & Hansen, Lars Hestbjerg, 2023, In: Archives of Virology. 168, 7 p., 71.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages
Alves, D. R., Nzakizwanayo, J., Dedi, C., Olympiou, C., Hanin, A., Kot, Witold, Hansen, Lars Hestbjerg, Lametsch, Rene, Gahan, C. G. M., Schellenberger, P., Ogilvie, L. A. & Jones, B. V., 2019, In: Frontiers in Microbiology. 10, p. 1-14 1783.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Role of the Colletotrichum acutatum sesquiterpene synthase CaTPS in the biosynthesis of sesquiterpenoids
Amby, Daniel Buchvaldt, Manczak, T., Petersen, Mikael Agerlin, Sundelin, T., Weitzel, C., Grajewski, M., Simonsen, H. T. & Jensen, Birgit, 2016, In: Microbiology. 162, 10, p. 1773-1783Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tracking antibiotic resistome during wastewater treatment using high throughput quantitative PCR
An, X., Su, J., Li, B., Ouyang, W., Zhao, Y., Chen, Q., Cui, L., Chen, H., Gillings, M. R., Zhang, T. & Zhu, Y., 2018, In: Environment International. 117, p. 146-153Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seed coating with the fungal biocontrol agent Clonostachys rosea controls clubroot in oilseed rape
Andersen, C. B., Jørgensen, Hans Jørgen Lyngs, Manzotti, A. & Jensen, Birgit, 2018, In: IOBC-WPRS Bulletin. 136, p. 157-163 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational Tools for the Analysis of Uncultivated Phage Genomes
Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.Research output: Contribution to journal › Review › Research › peer-review
- Published
Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom
Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human health risk assessment (HHRA) for environmental development and transfer of antibiotic resistance
Ashbolt, N. J., Amézquita, A., Backhaus, T., Borriello, P., Brandt, Kristian Koefoed, Collignon, P., Coors, A., Finley, R., Gaze, W. H., Heberer, T., Lawrence, J. R., Larsson, D. G. J., McEwen, S. A., Ryan, J. J., Schönfeld, J., Silley, P., Snape, J. R., Van den Eede, C. & Topp, E., 2013, In: Environmental Health Perspectives. 121, 9, p. 993-1001 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hydraulically active biopores stimulate pesticide mineralization in agricultural subsoil
Badawi, N., Johnsen, A. R., Brandt, Kristian Koefoed, Sørensen, Jan & Aamand, J., 2013, In: Soil Biology & Biochemistry. 57, p. 533-541 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Centimeter-scale spatial variability in 2-methyl-4-chlorophenoxyacetic acid mineralization increases with depth in agricultural soil
Badawi, N., Johnsen, A. R., Sørensen, Jan & Aamand, J., 2013, In: Journal of Environmental Quality. 42, 3, p. 683-689 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial composition associated with different traditions of salted and dried fish across countries
Bahrndorff, S., Menanteau-Ledouble, S., Stidsborg, S., Jørgensen, Niels O. G., Hoque, M. S. & Nielsen, J. L., 2022, In: Food Bioscience. 50, 7 p., 101991.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil
Bak, Frederik, Lyhne-Kjærbye, A., Tardif, S., Dresbøll, Dorte Bodin, Nybroe, O. & Nicolaisen, Mette Haubjerg, 2022, In: Phytobiomes Journal. 6, 3, p. 236-246 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment
Bak, Frederik, Henriksen, Alexander Pil, Nielsen, Tue Kjærgaard & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology resource announcements. 10, 44, 2 p., e0075421.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiota in preferential flow paths: Composition and lifestyles of microbial communities in an understudied subsurface environment
Bak, Frederik, 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
The biosurfactant viscosin transiently stimulates n-hexadecane mineralization by a bacterial consortium
Bak, Frederik, Bonnichsen, L., Jørgensen, Niels O. G., Nicolaisen, Mette Haubjerg & Nybroe, O., 2015, In: Applied Microbiology and Biotechnology. 99, 3, p. 1475-1483 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile
Bak, Frederik, Nybroe, O., Zheng, B., Badawi, N., Hao, X., Nicolaisen, Mette Haubjerg & Aamand, J., 1 Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-12 fiz008.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Paraglaciecola hydrolytica sp nov., a bacterium with hydrolytic activity against multiple seaweed-derived polysaccharides
Bech, P. K., Schultz-Johansen, M., Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 7, p. 2242-2247 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Cloning, purification and characterization of a thermostable beta-galactosidase from Bacillus licheniformis strain KG9
Bekler, F. M., Stougaard, P., Guven, K., Guven, R. G. & Acer, O., 2015, In: Cellular and Molecular Biology. 61, 3, p. 71-78 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distribution of arsenic resistance genes in prokaryotes
Ben Fekih, I., Zhang, C., Li, Y. P., Zhao, Y., Alwathnani, H. A., Saquib, Q., Rensing, C. & Cervantes, C., 2018, In: Frontiers in Microbiology. 9, p. 1-11 2473.Research output: Contribution to journal › Review › Research › peer-review
- Published
Cross-Frontier Communication: Phytohormone Functions at the Plant-Microbe Interface and Beyond
Berger, S., Van Wees, S. C. M., Nybroe, O. & Grosskinsky, D. K., 2020, In: Frontiers in Plant Science. 11, 2 p., 386.Research output: Contribution to journal › Editorial › Research
- Published
The microbial cycling of phosphorus on long-term fertilized soil: insights from phosphate oxygen isotope ratios
Bi, Q., Zheng, B., Lin, X., Li, K., Liu, X., Hao, X., Zhang, H., Zhang, J., Jaisi, D. P. & Zhu, Y., 2018, In: Chemical Geology. 483, p. 56-64Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes
Bista, P. K., Pillai, D., Roy, C., Scaria, J. & Narayanan, S. K., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e00297-22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biocide runoff from building facades: degradation kinetics in soil
Bollmann, U. E., Fernandez Calviño, D., Brandt, Kristian Koefoed, Storgaard, M. S., Sanderson, H. & Bester, K., 2017, In: Environmental Science & Technology (Washington). 51, 7, p. 3694-3702 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lipopeptide biosurfactant viscosin enhances dispersal of Pseudomonas fluorescens SBW25 biofilms
Bonnichsen, L., Svenningsen, N. B., Rybtke, Morten Levin, de Bruijn, I., Raaijmakers, J. M., Tolker-Nielsen, Tim & Nybroe, O., 2015, In: Microbiology. 161, 12, p. 2289-2297 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pseudomonas Lipopeptide Biosurfactants: Roles in Pollutant Biodegradation and Biofilm Formation
Bonnichsen, L., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 105 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Liquid scintillation counting can underestimate 14C-activity of 14CO2 trapped in NaOH
Boos, E. F., Magid, Jakob, Bruun, Sander & Jørgensen, Niels O. G., 2022, In: Soil Biology and Biochemistry. 166, 5 p., 108576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere
Bornø, Marie Louise, Zervas, A., Bak, Frederik, Merl, T., Koren, K., Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Müller-Stöver, Dorette Sophie, 2023, In: Science of the Total Environment. 905, 13 p., 166888.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large-scale phenomics identifies primary and fine-tuning roles for CRKs in responses related to oxidative stress
Bourdais, G., Burdiak, P., Gauthier, A., Nitsch, L., Salojärvi, J., Rayapuram, C., Idänheimo, N., Hunter, K., Kimura, S., Merilo, E., Vaattovaara, A., Oracz, K., Kaufholdt, D., Pallon, A., Anggoro, D. T., Glów, D., Lowe, J., Zhou, J., Mohammadi, O., Puukko, T. & 13 others, , 2015, In: P L o S Genetics. 11, 7, 36 p., e1005373.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis
Braga, L. P. P., Coutinho, F. H., Amgarten, D. E., Kot, Witold, Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2021, In: Environmental Microbiology Reports. 13, 3, p. 348-354 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios
Braga, L. P. P., Spor, A., Kot, Witold, Breuil, M., Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2020, In: Microbiome. 8, 1, 14 p., 52.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A pathogen‐induced gene of barley encodes a protein showing high similarity to a protein kinase regulator
Brandt, J., Thordal-Christensen, Hans, Vad, K., Gregersen, P. L. & Collinge, David B., 1 Jan 1992, In: The Plant Journal. 2, 5, p. 815-820 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecotoxicological assessment of antibiotics: a call for improved consideration of microorganisms
Brandt, Kristian Koefoed, Amézquita, A., Backhaus, T., Boxall, A., Coors, A., Heberer, T., Lawrence, J. R., Lazorchak, J., Schönfeld, J., Snape, J. R., Zhu, Y. & Topp, E., 2015, In: Environment International. 85, p. 189-205 17 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Impacts of dietary copper on the swine gut microbiome and antibiotic resistome
Brinck, J. E., Lassen, Simon Bo, Forouzandeh, A., Pan, T., Wang, Y. Z., Monteiro, A., Blavi, L., Solà-Oriol, D., Stein, H. H., Su, J. Q. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 857, 11 p., 159609.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of Quorum sensing inhibitors on the evolution of CRISPR-based phage immunity in Pseudomonas aeruginosa
Broniewski, J. M., Chisnall, M. A. W., Høyland-Kroghsbo, Nina Molin, Buckling, A. & Westra, E. R., 2021, In: I S M E Journal. 15, p. 2465-2473Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Browne, Patrick Denis, Cold, F., Petersen, Andreas Munk, Halkjær, S. I., Christensen, A. H., Günther, S. & Hansen, Lars Hestbjerg, 2021, In: Gut Microbes. 13, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements
Browne, Patrick Denis, Kot, Witold, Jørgensen, T. S. & Hansen, Lars Hestbjerg, 2020, Horizontal Gene Transfer: Methods and Protocols. Cruz, F. D. L. (ed.). Humana Press, p. 253-264 (Methods in Molecular Biology, Vol. 2075).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The great divide: rhamnolipids mediate separation between P. aeruginosa and S. aureus
Bru, J., Kasallis, S. J., Chang, R., Zhuo, Q., Nguyen, J., Pham, P., Warren, E., Whiteson, K., Høyland-Kroghsbo, Nina Molin, Limoli, D. H. & Siryaporn, A., 2023, In: Frontiers in Cellular and Infection Microbiology. 13, 16 p., 1245874.Research output: Contribution to journal › Journal article › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
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The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
Research output: Contribution to journal › Journal article › Research › peer-review
Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors
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