Microbial Ecology and Biotechnology

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  1. 2023
  2. Published

    Cessation of grazing causes biodiversity loss and homogenization of soil food webs

    Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Characterization and finding the origin of off-flavor compounds in Nile tilapia cultured in net cages in hydroelectric reservoirs, São Paulo State, Brazil

    Podduturi, Raju, da Silva David, G., da Silva, R. J., Hyldig, G., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2023, In: Food Research International. 173, 15 p., 113375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Collaborations Between Microbes and those who Love Them

    Høyland-Kroghsbo, Nina Molin, 2023, In: Israel Journal of Chemistry. 63, 3 p., e202200082.

    Research output: Contribution to journal › Review › Research › peer-review

  5. Published

    Complete Genome Sequence of Sphingopyxis sp. Strain PET50, a Potential Polyethylene Terephthalate (PET)-Degrading Bacterium Isolated from Compost

    Lago-Maciel, A., Nielsen, Tue Kjærgaard, Jensen, K., Nicolaisen, Mette Haubjerg & Hennessy, Rosanna Catherine, 2023, In: Microbiology Resource Announcements. 12, 1, 2 p., e0097022.

    Research output: Contribution to journal › Journal article › Research

  6. Published

    Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

    Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software

    Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Development of a high-throughput chip technology to monitor water quality, off-flavour and diseases in recirculated aquaculture systems (RAS)

    Li, H., Larsen, H., Heegaard, P., Jørgensen, Niels O. G. & Jørgensen, Louise von Gersdorff, 2023, p. 40. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  9. Published

    Dietary non-starch polysaccharides impair immunity to enteric nematode infection

    Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere

    Bornø, Marie Louise, Zervas, A., Bak, Frederik, Merl, T., Koren, K., Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Müller-Stöver, Dorette Sophie, 2023, In: Science of the Total Environment. 905, 13 p., 166888.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds

    Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Epigenetic effects of short-chain fatty acids from the large intestine on host cells

    Stein, R. A. & Riber, Leise, 2023, In: microLife. 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Evolutionary genomic patterns of diversity and adaptability in the host-specificentomopathogenic fungus, Metarhizium acridum

    mbs625, mbs625, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 212 p.

    Research output: Book/Report › Ph.D. thesis › Research

  14. Published

    Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice

    Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Danielsen, M. R., Jakobsen, Rasmus Riemer, Zachariassen, L. S. F., Castro Mejia, J. L., Brunse, Anders, Hansen, Lars Hestbjerg, Hansen, Camilla Hartmann Friis, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2023, In: Gut Microbes. 15, 1, 21 p., 2208504.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Four novel Curtobacterium phages isolated from environmental samples

    Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    From BCA discovery in cereals to biological control of Fusarium head blight

    Collinge, David B., Khairoullina, A., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2023, p. 58-59. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  17. Published

    Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids

    Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Global biogeographic distribution of Bathyarchaeota in paddy soils

    Xue, S. D., Yi, Xingyun, Cui, H. L., Li, M., Peng, J. J., Zhu, Y. G. & Duan, G. L., 2023, In: mSystems. 8, 3, 15 p., e0014323.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes

    Fu, Y., Dou, Q., Smalla, K., Wang, Y., Johnson, T. A., Brandt, K. K., Mei, Z., Liao, M., Hashsham, S. A., Schäffer, A., Smidt, H., Zhang, T., Li, H., Stedtfeld, R., Sheng, H., Chai, B., Virta, M., Jiang, X., Wang, F., Zhu, Y. G. & 1 others, Tiedje, J. M., 2023, In: mLife. 2, 4, p. 350-364 15 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Impacts of biochar materials on copper speciation, bioavailability, and toxicity in chromated copper arsenate polluted soil

    Tang, Yinqi, Wang, Chen, Holm, Peter Engelund, Hansen, Hans Chr. Bruun & Brandt, Kristian Koefoed, 2023, In: Journal of Hazardous Materials. 459, 14 p., 132067.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Impacts of dietary copper on the swine gut microbiome and antibiotic resistome

    Brinck, J. E., Lassen, Simon Bo, Forouzandeh, A., Pan, T., Wang, Y. Z., Monteiro, A., Blavi, L., Solà-Oriol, D., Stein, H. H., Su, J. Q. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 857, 11 p., 159609.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Insights into abundance, adaptation and activity of prokaryotes in arctic and Antarctic environments

    Holmberg, S. M. & Jørgensen, Niels O. G., 2023, In: Polar Biology. 46, p. 381-396

    Research output: Contribution to journal › Review › Research › peer-review

  23. Published

    Insights on strain 115 plant growth-promoting bacteria traits and its contribution in lead stress alleviation in pea (Pisum sativum L.) plants

    Chamekh, Anissa, Kharbech, O., Fersi, C., Driss Limam, R., Brandt, Kristian Koefoed, Djebali, W. & Chouari, R., 2023, In: Archives of Microbiology. 205, 12 p., 1.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition

    Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Isothiazolinone inhibition of soil microbial activity persists despite biocide dissipation

    Fernández-Calviño, D., Rousk, J., Bååth, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2023, In: Soil Biology and Biochemistry. 178, 9 p., 108957.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Limited impacts of high doses of dietary copper on the gut bacterial metal resistome explain negligible co-selection of antibiotic resistance

    Forouzandeh, A., Lassen, Simon Bo, Brinck, J. E., Zhou, Y. Y., Zhu, J., Solà-Oriol, D., Monteiro, A., Hao, X., Su, J. Q., Stein, H. H., Pérez, J. F. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 889, 11 p., 164183.

    Research output: Contribution to journal › Journal article › Research › peer-review

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