- 2024
- Published
A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
Latz, Meike, Andersson, A., Brugel, S., Hedblom, M., Jurdzinski, K. T., Karlson, B., Lindh, M., Lycken, J., Torstensson, A. & Andersson, A. F., 2024, In: Scientific Data. 11, 9 p., 18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges and opportunities for increasing the use of low-risk plant protection products in sustainable production. A review
Lankinen, Å., Witzell, J., Aleklett, K., Furenhed, S., Green, K. K., Latz, Meike, Liljeroth, E., Larsson, R., Löfkvist, K., Meijer, J., Menkis, A., Ninkovic, V., Olson, Å. & Grenville-Briggs, L., 2024, In: Agronomy for Sustainable Development. 44, 22 p., 21.Research output: Contribution to journal › Review › Research › peer-review
- Published
Do contaminants compromise the use of recycled nutrients in organic agriculture? A review and synthesis of current knowledge on contaminant concentrations, fate in the environment and risk assessment
Bünemann, E. K., Reimer, M., Smolders, E., Smith, S. R., Bigalke, M., Palmqvist, A., Brandt, Kristian Koefoed, Möller, K., Harder, R., Hermann, L., Speiser, B., Oudshoorn, F., Løes, A. K. & Magid, Jakob, 2024, In: Science of the Total Environment. 912, 18 p., 168901.Research output: Contribution to journal › Review › Research › peer-review
- Published
Does regulation hold the key to optimizing lipopeptide production in Pseudomonas for biotechnology?
Zhou, L., Höfte, M. & Hennessy, Rosanna Catherine, 2024, In: Frontiers in Bioengineering and Biotechnology. 12, 28 p., 1363183.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multifaceted photoreceptor compositions in dual phototrophic systems – A genomic analysis
Ihalainen, J. A., Dogan, B., Kurttila, M., Zeng, Y., van Elsas, J. D. & Nissinen, R., 2024, In: Journal of Molecular Biology. 436, 5, 13 p., 168412.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Niche differentiation and biogeography of Bathyarchaeia in paddy soil ecosystems: a case study in eastern China
Yi, Xingyun, Brandt, Kristian Koefoed, Xue, S., Peng, J., Wang, Y., Li, M., Deng, Y. & Duan, G., 2024, In: Environmental Microbiome. 19, 12 p., 13.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors
van Zanten, G. C., Madsen, Anne Lundager, Yde, C. C., Krych, Lukasz, Yeung, N., Saarinen, M. T., Kot, Witold, Jensen, H. M., Rasmussen, Morten Arendt, Ouwehand, A. C. & Nielsen, Dennis Sandris, 2024, In: Microorganisms. 12, 4, 18 p., 796.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The coffee leaf rust pandemic: An ever-present danger to coffee production
Koutouleas, Tina, Collinge, David B. & Boa, E., 2024, In: Plant Pathology. 73, 3, p. 522-534Research output: Contribution to journal › Review › Research › peer-review
- Published
The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
Xie, Zhuqing, He, W., Gobbi, Alex, Bertram, H. C. & Nielsen, Dennis Sandris, 2024, In: BMC Microbiology. 24, 13 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2023
- Published
Universiteterne har brug for en reformpause
Kropp, K., Vallgårda, Karen Asta Arnfred, Hougaard Laustsen-Kiel, A., Albrechtsen, Nicolai Jacob Wewer, Sylow, Lykke, Damgaard, R. B., Kristensen, Line Burholt, Hansen, N. C., Uusimäki, E., Jønsson, A. B., Høyland-Kroghsbo, Nina Molin, Eriksen, J. J., Rasmussen, Laura Vang, Andersen, P. E., Jensen, Louise Kruse, Lomborg, Stine, Morueta-Holme, Naia, Simonsen, K. B., Zetterberg-Nielsen, S. & Autzen, A., 29 Jan 2023, In: Berlingske Tidende.Research output: Contribution to journal › Contribution to newspaper - Comment/debate › Communication
- Published
Pseudomonas nunensis sp. nov. isolated from a suppressive potato field in Greenland
Ntana, F., Hennessy, Rosanna Catherine, Zervas, A. & Stougaard, P., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 2, 8 p., 005700.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota
Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Airborne methicillin-resistant Staphylococcus aureus, other bacteria, fungi, endotoxin, and dust in a pigeon exhibition
Madsen, A. M., Zhang, F., Zeng, Y. & Frederiksen, M. W., 2023, In: Environmental Research. 216, 7 p., 114642.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Alternative plant protection strategies for tomorrow's coffee
Koutouleas, Tina, Collinge, David B. & Ræbild, Anders, 2023, In: Plant Pathology. 72, 3, p. 409-429Research output: Contribution to journal › Review › Research › peer-review
- Published
An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette
Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial dual phototrophy was demystified
Zeng, Y., 2023, In: Trends in Microbiology. 31, 4, p. 326-328 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacteriophages Targeting both Pathogenic and Commensal Plant-Associated Bacteria
Djurhuus, Amaru Miranda, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 132 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Biochar assisted soil quality recovery in chromated copper arsenate contaminated soil
Tang, Yinqi, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 268 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Biocontrol effect of Clonostachys rosea on Fusarium graminearum infection and mycotoxin detoxification in oat (Avena sativa)
Khairullina, A., Micic, Nikola, Jørgensen, Hans Jørgen Lyngs, Bjarnholt, Nanna, Bülow, L., Collinge, David B. & Jensen, Birgit, 2023, In: Plants. 12, 3, 16 p., 500.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice
Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cessation of grazing causes biodiversity loss and homogenization of soil food webs
Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization and finding the origin of off-flavor compounds in Nile tilapia cultured in net cages in hydroelectric reservoirs, São Paulo State, Brazil
Podduturi, Raju, da Silva David, G., da Silva, R. J., Hyldig, G., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2023, In: Food Research International. 173, 15 p., 113375.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Collaborations Between Microbes and those who Love Them
Høyland-Kroghsbo, Nina Molin, 2023, In: Israel Journal of Chemistry. 63, 3 p., e202200082.Research output: Contribution to journal › Review › Research › peer-review
- Published
Complete Genome Sequence of Sphingopyxis sp. Strain PET50, a Potential Polyethylene Terephthalate (PET)-Degrading Bacterium Isolated from Compost
Lago-Maciel, A., Nielsen, Tue Kjærgaard, Jensen, K., Nicolaisen, Mette Haubjerg & Hennessy, Rosanna Catherine, 2023, In: Microbiology Resource Announcements. 12, 1, 2 p., e0097022.Research output: Contribution to journal › Journal article › Research
- Published
Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese
Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development of a high-throughput chip technology to monitor water quality, off-flavour and diseases in recirculated aquaculture systems (RAS)
Li, H., Larsen, H., Heegaard, P., Jørgensen, Niels O. G. & Jørgensen, Louise von Gersdorff, 2023, p. 40. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Dietary non-starch polysaccharides impair immunity to enteric nematode infection
Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere
Bornø, Marie Louise, Zervas, A., Bak, Frederik, Merl, T., Koren, K., Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Müller-Stöver, Dorette Sophie, 2023, In: Science of the Total Environment. 905, 13 p., 166888.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds
Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic effects of short-chain fatty acids from the large intestine on host cells
Stein, R. A. & Riber, Leise, 2023, In: microLife. 4, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary genomic patterns of diversity and adaptability in the host-specificentomopathogenic fungus, Metarhizium acridum
mbs625, mbs625, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 212 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice
Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Danielsen, M. R., Jakobsen, Rasmus Riemer, Zachariassen, L. S. F., Castro Mejia, J. L., Brunse, Anders, Hansen, Lars Hestbjerg, Hansen, Camilla Hartmann Friis, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2023, In: Gut Microbes. 15, 1, 21 p., 2208504.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four novel Curtobacterium phages isolated from environmental samples
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From BCA discovery in cereals to biological control of Fusarium head blight
Collinge, David B., Khairoullina, A., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2023, p. 58-59. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global biogeographic distribution of Bathyarchaeota in paddy soils
Xue, S. D., Yi, Xingyun, Cui, H. L., Li, M., Peng, J. J., Zhu, Y. G. & Duan, G. L., 2023, In: mSystems. 8, 3, 15 p., e0014323.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes
Fu, Y., Dou, Q., Smalla, K., Wang, Y., Johnson, T. A., Brandt, K. K., Mei, Z., Liao, M., Hashsham, S. A., Schäffer, A., Smidt, H., Zhang, T., Li, H., Stedtfeld, R., Sheng, H., Chai, B., Virta, M., Jiang, X., Wang, F., Zhu, Y. G. & 1 others, , 2023, In: mLife. 2, 4, p. 350-364 15 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Impacts of biochar materials on copper speciation, bioavailability, and toxicity in chromated copper arsenate polluted soil
Tang, Yinqi, Wang, Chen, Holm, Peter Engelund, Hansen, Hans Chr. Bruun & Brandt, Kristian Koefoed, 2023, In: Journal of Hazardous Materials. 459, 14 p., 132067.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impacts of dietary copper on the swine gut microbiome and antibiotic resistome
Brinck, J. E., Lassen, Simon Bo, Forouzandeh, A., Pan, T., Wang, Y. Z., Monteiro, A., Blavi, L., Solà-Oriol, D., Stein, H. H., Su, J. Q. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 857, 11 p., 159609.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into abundance, adaptation and activity of prokaryotes in arctic and Antarctic environments
Holmberg, S. M. & Jørgensen, Niels O. G., 2023, In: Polar Biology. 46, p. 381-396Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights on strain 115 plant growth-promoting bacteria traits and its contribution in lead stress alleviation in pea (Pisum sativum L.) plants
Chamekh, Anissa, Kharbech, O., Fersi, C., Driss Limam, R., Brandt, Kristian Koefoed, Djebali, W. & Chouari, R., 2023, In: Archives of Microbiology. 205, 12 p., 1.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isothiazolinone inhibition of soil microbial activity persists despite biocide dissipation
Fernández-Calviño, D., Rousk, J., Bååth, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2023, In: Soil Biology and Biochemistry. 178, 9 p., 108957.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Limited impacts of high doses of dietary copper on the gut bacterial metal resistome explain negligible co-selection of antibiotic resistance
Forouzandeh, A., Lassen, Simon Bo, Brinck, J. E., Zhou, Y. Y., Zhu, J., Solà-Oriol, D., Monteiro, A., Hao, X., Su, J. Q., Stein, H. H., Pérez, J. F. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 889, 11 p., 164183.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pheno- and Genotyping of Three Novel Bacteriophage Genera That Target a Wheat Phyllosphere Sphingomonas Genus
Riber, Leise, Carstens, Alexander Byth, Dougherty, Peter Erdmann, Roy, C., Willenbücher, K., Hille, F., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2023, In: Microorganisms. 11, 7, 17 p., 1831.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic variation and genomic variation in insect virulence traits reveal patterns of intraspecific diversity in a locust-specific fungal pathogen
mbs625, mbs625, Meyling, Nicolai Vitt & de Fine Licht, Henrik Hjarvard, 2023, In: Journal of Evolutionary Biology. 36, 10, p. 1438-1454 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant disease management in the post-genomic era: from functional genomics to genome editing, Volume II: Editorial
Sarrocco, S., Herrera-Estrella, A. & Collinge, David B., 2023, In: Frontiers in Microbiology. 14, 3 p., 1203870.Research output: Contribution to journal › Editorial › Research
- Published
Potential sources and producers of 2-methylisoborneol and geosmin in a river supplying a drinking water treatment plant
Franklin, H. M., Podduturi, Raju, Jørgensen, Niels O. G., Roberts, D. T., Schlüter, L. & Burford, M. A., 2023, In: Chemical Engineering Journal Advances. 14, 12 p., 100455.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of Cyanotoxin Episodes in Freshwater: A Case Study on Microcystin and Saxitoxin in the Lobo Reservoir, São Paulo State, Brazil
Moraes, M. D. A. B., Rodrigues, R. D. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., 2023, In: Environments. 10, 8, 16 p., 143.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pruning Wound Protection Products Induce Alterations in the Wood Mycobiome Profile of Grapevines
Del Frari, G., Aggerbeck, M. R., Gobbi, Alex, Ingrà, C., Volpi, L., Nascimento, T., Ferrandino, A., Hansen, Lars Hestbjerg & Ferreira, R. B., 2023, In: Journal of Fungi. 9, 4, 20 p., 488.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relationship between fungal endophytes and plant disease: C9.3-3
Jensen, Birgit, Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2023, p. 280. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Removal of a complex VOC mixture by potted plants - effects on soil microorganisms
Dela Cruz, Majbrit, Svenningsen, N. B., Nybroe, O., Müller, Renate & Christensen, Jan H., 2023, In: Environmental Science and Pollution Research. 30, p. 55372-55381Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity
Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Response of bacterial communities to the application of sewage sludge biochar and Penicillium aculeatum in rhizosphere and bulk soil of wheat
Efthymiou, A., Nunes, I., Jensen, Birgit & Jakobsen, Iver, 2023, In: Applied Soil Ecology. 190, 10 p., 104986.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Response of microbial taxonomic and nitrogen functional attributes to elevated nitrate in suburban groundwater
Zhang, L., He, W., Huang, F., He, W., Zhou, P., Chen, C., Rensing, C., Brandt, Kristian Koefoed, He, J., Liu, F., Zhao, Y. & Guo, H., 2023, In: Science of the Total Environment. 874, 12 p., 162524.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial controls of methane uptake in upland soils across climatic and geological regions in Greenland
D'Imperio, Ludovica, Li, B., Tiedje, J. M., Oh, Y., Christiansen, Jesper Riis, Kepfer Rojas, Sebastian, Westergaard-Nielsen, Andreas, Brandt, Kristian Koefoed, Holm, Peter Engelund, Wang, P., Ambus, Per Lennart & Elberling, Bo, 2023, In: Communications Earth & Environment. 4, 1, 10 p., 461.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal heterogeneity of nitrogen transformation potentials in a freshwater estuarine system
Lv, Jiali, Wang, S., Liu, B. & Song, X., 2023, In: Science of the Total Environment. 859, Part 2, 160335.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Swarming of P. aeruginosa: Through the lens of biophysics
Bru, J., Kasallis, S. J., Zhuo, Q., Høyland-Kroghsbo, Nina Molin & Siryaporn, A., 2023, In: Biophysics reviews. 4, 3, 18 p., 031305.Research output: Contribution to journal › Review › Research › peer-review
- Published
The Hitchhiker’s Guide to Statistical Analysis of Feature-based Molecular Networks from Non-Targeted Metabolomics Data
Pakkir Shah, A. K., Walter, A., Ottosson, F., Russo, F., Navarro-Díaz, M., Boldt, J., Kalinski, J-C., Kontou, E. E., Elofson, J., Polyzois, A., González-Marín, C., Farrell, S., Aggerbeck, M. R., Pruksatrakul, T., Chan, N., Wang, Y., Pöchhacker, M., Brungs, C., Cámara, B., Caraballo-Rodríguez, A. M. & 37 others, , 2023, ChemRxiv, 83 p.Research output: Working paper › Preprint › Research
- Published
The Role of Cyclic Lipopeptides in Bacterial-Plant Interactions
Guan, Ying, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 205 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The great divide: rhamnolipids mediate separation between P. aeruginosa and S. aureus
Bru, J., Kasallis, S. J., Chang, R., Zhuo, Q., Nguyen, J., Pham, P., Warren, E., Whiteson, K., Høyland-Kroghsbo, Nina Molin, Limoli, D. H. & Siryaporn, A., 2023, In: Frontiers in Cellular and Infection Microbiology. 13, 16 p., 1245874.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses
Zhai, Xichuan, Castro-Mejía, J. L., Gobbi, Alex, Aslampaloglou, A., Kot, Witold, Nielsen, Dennis Sandris & Deng, Ling, 2023, In: Microbiome. 11, 12 p., 193.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three novel Erwinia billingiae phages isolated from organic waste represent three new genera
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Kot, Witold & Hansen, Lars Hestbjerg, 2023, In: Archives of Virology. 168, 7 p., 71.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Understanding the mechanisms underlying biological control of Fusarium diseases in cereals
Petrucci, A., Khairullina, A., Sarrocco, S., Jensen, Dan Funck, Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2023, In: European Journal of Plant Pathology. 167, p. 453-476Research output: Contribution to journal › Review › Research › peer-review
- Published
Used Nasogastric Feeding Tubes from Neonates Contain Infant-Specific Bacterial Profiles
Meinich Juhl, S., Angeliki Krogfelt, K., Kot, Witold, Nielsen, Dennis Sandris & Krych, Lukasz, 2023, In: Microorganisms. 11, 6, 11 p., 1365.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
Dougherty, Peter Erdmann, Nielsen, Tue Kjærgaard, Riber, Leise, Lading, H. H., Forero Junco, Laura Milena, Kot, Witold, Raaijmakers, J. M. & Hansen, Lars Hestbjerg, 2023, In: ISME Journal. 17, 12, p. 2415-2425Research output: Contribution to journal › Journal article › Research › peer-review
- Published
“Impacts of treated wastewater on soil properties with special reference to the soil microbiome and resistome in irrigated Tunisian agricultural soils”.
Chamekh, Anissa, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 159 p.Research output: Book/Report › Ph.D. thesis › Research
- 2022
- Published
2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem
Qian, P., Gardiner, A. T., Šímová, I., Naydenova, K., Croll, T. I., Jackson, P. J., Nupur, Kloz, M., Čubáková, P., Kuzma, M., Zeng, Y., Castro-Hartmann, P., van Knippenberg, B., Goldie, K. N., Kaftan, D., Hrouzek, P., Hájek, J., Agirre, J., Siebert, C. A., Bína, D. & 7 others, , 2022, In: Science Advances. 8, 7, 12 p., eabk3139.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs
Gobbi, Alex, Acedo, A., Imam, N., Santini, R. G., Ortiz-Alvarez, R., Ellegaard-Jensen, L., Belda, I. & Hansen, Lars Hestbjerg, 2022, In: Communications Biology . 5, 9 p., 241.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics
Li, H. Z., Yang, K., Liao, H., Lassen, Simon Bo, Su, J. Q., Zhang, X., Cui, L. & Zhu, Y. G., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 40, 10 p., e2201473119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
Nielsen, Tue Kjærgaard, Browne, Patrick Denis & Hansen, Lars Hestbjerg, 2022, In: GigaScience. 11, 17 p., giac072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of heavy metals from pangasius and tilapia aquaculture in Bangladesh and human consumption risk
Ahsan, M. E., Islam, S. R., Razzak, M. A., Ali, M. L. & Haque, M. M., 2022, In: Aquaculture International. 30, 3, p. 1407-1434 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Back to our roots: exploring the role of root morphology as a mediator of beneficial plant–microbe interactions
Herms, Courtney Horn, Hennessy, Rosanna Catherine, Bak, Frederik, Dresbøll, Dorte Bodin & Nicolaisen, Mette Haubjerg, 2022, In: Environmental Microbiology. 24, 8, p. 3264-3272Research output: Contribution to journal › Review › Research › peer-review
- Published
Bacterial composition associated with different traditions of salted and dried fish across countries
Bahrndorff, S., Menanteau-Ledouble, S., Stidsborg, S., Jørgensen, Niels O. G., Hoque, M. S. & Nielsen, J. L., 2022, In: Food Bioscience. 50, 7 p., 101991.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Biological control of plant diseases – what has been achieved and what is the direction?
Collinge, David B., Jensen, Dan Funck, Rabiey, M., Sarrocco, S., Shaw, M. W. & Shaw, R., 2022, In: Plant Pathology. 71, 5, p. 1024-1047Research output: Contribution to journal › Review › Research › peer-review
- Published
Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil
Gómez-Muñoz, B., Efthymiou, A., Dubey, M., Sølve, Jonathan, Nicolaisen, Mette Haubjerg, Jensen, Dan Funck, Nybroe, O. & Larsen, J., 2022, In: Fungal Biology. 126, 5, p. 356-365 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of five marine family 29 glycoside hydrolases reveals an α-l-fucosidase targeting specifically Fuc(α1,4)GlcNAc
Schultz-Johansen, M., Stougaard, P., Svensson, B. & Teze, D., 2022, In: Glycobiology. 32, 6, p. 529-539Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue
Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes
Bista, P. K., Pillai, D., Roy, C., Scaria, J. & Narayanan, S. K., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e00297-22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment
Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational Tools for the Analysis of Uncultivated Phage Genomes
Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.Research output: Contribution to journal › Review › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers
Peixoto, L., Olesen, J. E., Elsgaard, L., Lønne Enggrob, K., C. Banfield, C., Dippold, M. A., Nicolaisen, Mette Haubjerg, Bak, Frederik, Zang, H., Dresbøll, Dorte Bodin, Thorup-Kristensen, Kristian & Rasmussen, J., 2022, In: Scientific Reports. 12, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil
Bak, Frederik, Lyhne-Kjærbye, A., Tardif, S., Dresbøll, Dorte Bodin, Nybroe, O. & Nicolaisen, Mette Haubjerg, 2022, In: Phytobiomes Journal. 6, 3, p. 236-246 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties
Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Bak, Frederik, Guan, Ying, Herms, Courtney Horn, Molina Zamudio, Kitzia Yashvelt, Thybo Ganzhorn, D., Müller-Stöver, Dorette Sophie, Ahmad, J., Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology resource announcements. 11, 5, 3 p., e0022222.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs
Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination
Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enzyme activity profiling for physiological phenotyping within functional phenomics: plant growth and stress responses
Jammer, A., Akhtar, S. S., Amby, Daniel Buchvaldt, Pandey, Chandana, Mekureyaw, M. F., Bak, Frederik, Roth, P. M. & Roitsch, Thomas Georg, 2022, In: Journal of Experimental Botany. 73, 15, p. 5170-5198Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data
Mas-Sandoval, A., Pope, N. S., Nielsen, Knud Nor, Altinkaya, Isin, Fumagalli, M. & Korneliussen, Thorfinn Sand, 2022, In: GigaScience. 11, 9 p., giac032.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fate of Saxitoxins in Lake Water: Preliminary Testing of Degradation by Microbes and Sunlight
Jørgensen, Niels O. G., Podduturi, Raju, Michelsen, C. F., Jepsen, T. & Moraes, M. D. A. B., 2022, In: Water. 14, 21, 18 p., 3556.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fecal filtrate transplantation protects against necrotizing enterocolitis
Brunse, Anders, Deng, Ling, Pan, X., Hui, Y., Castro Mejia, J. L., Kot, Witold, Nguyen, Duc Ninh, Secher, Jan Bojsen-Møller, Nielsen, Dennis Sandris & Thymann, Thomas, 2022, In: The ISME Journal. 16, p. 686–694Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From Alpha Diversity to Zzz: Interactions among sleep, the brain, and gut microbiota in the first year of life
Schoch, S. F., Castro-Mejía, J. L., Krych, Lukasz, Leng, B., Kot, Witold, Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. C., Nielsen, Dennis Sandris & Kurth, S., 2022, In: Progress in Neurobiology. 209, 11 p., 102208.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungal Endophytes Isolated from Elymus repens, a Wild Relative of Barley, Have Potential for Biological Control of Fusarium culmorum and Pyrenophora teres in Barley
Høyer, A. K., Jørgensen, Hans Jørgen Lyngs, Hodkinson, T. R. & Jensen, Birgit, 2022, In: Pathogens. 11, 14 p., 1097.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungal endophytes in plants and their relationship to plant disease
Collinge, David B., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2022, In: Current Opinion in Microbiology. 69, 6 p., 102177.Research output: Contribution to journal › Review › Research › peer-review
- Published
Genetic, Phenotypic and Metabolic Diversity of Yeasts From Wheat Flag Leaves
Gouka, L., Vogels, C., Hansen, Lars Hestbjerg, Raaijmakers, J. M. & Cordovez, V., 2022, In: Frontiers in Plant Science. 13, 13 p., 908628.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gluten-free diet reduces autoimmune diabetes mellitus in mice across multiple generations in a microbiota-independent manner
Hansen, Camilla Hartmann Friis, Larsen, C. S., Zachariassen, L. F., Mentzel, Caroline M. Junker, Laigaard, A., Krych, Lukasz, Nielsen, Dennis Sandris, Gobbi, Alex, Haupt-Jorgensen, M., Buschard, K. & Hansen, Axel Kornerup, 2022, In: Journal of Autoimmunity. 127, 102795.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gut Microbiome and Its Cofactors Are Linked to Lipoprotein Distribution Profiles
Castro-Mejía, J. L., Khakimov, Bekzod, Aru, Violetta, Lind, M. V., Garne, E., Paulová, P., Tavakkoli, E., Hansen, Lars Hestbjerg, Smilde, Age Klaas, Holm, L., Engelsen, Søren Balling & Nielsen, Dennis Sandris, 2022, In: Microorganisms. 10, 11, 2156.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and Functional Characterisation of Two Oat UDP-Glucosyltransferases Involved in Deoxynivalenol Detoxification
Khairullina, A., Renhuldt, N. T., Wiesenberger, G., Bentzer, J., Collinge, David B., Adam, G. & Bülow, L., 2022, In: Toxins. 14, 7, 16 p., 446.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inoculation of tomato (Solanum lycopersicum) roots with growth promoting Pseudomonas strains induces distinct local and systemic metabolic biosignatures
Mekureyaw, M. F., Beierholm, A. E., Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Physiological and Molecular Plant Pathology. 117, 10 p., 101757.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Liquid scintillation counting can underestimate 14C-activity of 14CO2 trapped in NaOH
Boos, E. F., Magid, Jakob, Bruun, Sander & Jørgensen, Niels O. G., 2022, In: Soil Biology and Biochemistry. 166, 5 p., 108576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-Term Safety Following Faecal Microbiota Transplantation as a Treatment for Recurrent Clostridioides difficile Infection Compared with Patients Treated with a Fixed Bacterial Mixture: Results from a Retrospective Cohort Study
Cold, F., Svensson, C. K., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Cells. 11, 3, 18 p., 435.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Machine learning and deep learning applications in microbiome research
Hernandez Medina, Ricardo, Kutuzova, Svetlana, Nielsen, Knud Nor, Johansen, Joachim, Hansen, Lars Hestbjerg, Nielsen, Mads & Rasmussen, Simon, 2022, In: ISME Communications. 2, 7 p., 98.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Marked gut microbiota dysbiosis and increased imidazole propionate are associated with a NASH Göttingen Minipig model
Lützhøft, Ditte Olsen, Sinioja, T., Christoffersen, B., Jakobsen, Rasmus Riemer, Geng, Dawei, Ahmad, H. F. B., Straarup, E. M., Pedersen, K. M., Kot, Witold, Pedersen, H. D., Cirera, Susanna, Hyötyläinen, T., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: BMC Microbiology. 22, 1, 287.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Maturation of sleep-gut microbiome dynamics in infancy and links to behavioral development
Kurth, S., Schoch, S., Castro-Mejia, J., Krych, Lukasz, Leng, B., Kot, Witold, Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. & Nielsen, D., 2022, In: Journal of Sleep Research. 31, S1, p. 93-94 2 p., O194/P949.Research output: Contribution to journal › Conference abstract in journal › Research › peer-review
- Published
Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage
Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Carbone, I., Cornish, V., Müller-Stöver, Dorette Sophie, Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology Resource Announcements. 11, 11, 4 p., e0066322.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Muskoxen homogenise soil microbial communities and affect the abundance of methanogens and methanotrophs
Aggerbeck, M. R., Nielsen, Tue Kjærgaard, Mosbacher, J. B., Schmidt, N. M. & Hansen, Lars Hestbjerg, 2022, In: Science of the Total Environment. 827, 9 p., 153877.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parasite-Probiotic Interactions in the Gut: Bacillus sp. and Enterococcus faecium Regulate Type-2 Inflammatory Responses and Modify the Gut Microbiota of Pigs During Helminth Infection
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Krych, Lukasz, Jakobsen, S. R., Kot, Witold, Skovgaard, K., Canibe, N., Nejsum, P., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: Frontiers in Immunology. 12, 793260.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phage Infection Restores PQS Signaling and Enhances Growth of a Pseudomonas aeruginosa lasI Quorum-Sensing Mutant
Høyland-Kroghsbo, Nina Molin & Bassler, B. L., 2022, In: Journal of Bacteriology. 204, 5, 14 p., e00557-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant extracts as potential control agents of Black Sigatoka in banana
Kumakech, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Edema, R. & Okori, P., 2022, In: Journal of Plant Pathology. 104, p. 1303-1314 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prevalence of antibiotic resistance genes in Pangasianodon hypophthalmus and Oreochromis niloticus aquaculture production systems in Bangladesh
Lassen, Simon Bo, Ahsan, M. E., Islam, S. R., Zhou, X. Y., Razzak, M. A., Su, J. Q. & Brandt, Kristian Koefoed, 2022, In: Science of the Total Environment. 813, 151915.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of Tomato Specialised Metabolism after Establishment of Symbiosis with the Endophytic Fungus Serendipita indica
Ntana, F., Johnson, S. R., Hamberger, B., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2022, In: Microorganisms. 10, 17 p., 194.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of virulence properties in the fish pathogen Vibrio anguillarum: The role of prophages and quorum sensing
Mauritzen, Jesper Juel, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 277 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Salmonella phage akira, infecting selected Salmonella enterica Enteritidis and Typhimurium strains, represents a new lineage of bacteriophages
Olsen, Nikoline S., Lametsch, Rene, Wagner, N., Hansen, Lars Hestbjerg & Kot, Witold, 2022, In: Archives of Virology. 167, p. 2049–2056Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing
Latz, Meike, Grujcic, V., Brugel, S., Lycken, J., John, U., Karlson, B., Andersson, A. & Andersson, A. F., 2022, In: Molecular Ecology Resources. 22, 6, p. 2304-2318 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Student mental health and engagement of students in a large online classroom setting during a global pandemic
Høyland-Kroghsbo, Nina Molin, 2022, Improving University Science Teaching and Learning: Pedagogical Projects 2022. Andersen Arias, A. & Voetmann Christiansen, F. (eds.). Department of Science Education, University of Copenhagen, p. 199-212 (Improving University Science Teaching and Learning - Pedagogical Projects, Vol. 17).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Successful treatment of Clostridioidesdifficile infection with single-donor faecal microbiota transplantation capsules
Cold, F., Svensson, C. K., Christensen, A. H., Günther, S., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Danish Medical Journal. 69, 2, 10 p., 09210712.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Successful treatment of Clostridioidesdifficile infection with single-donorfaecal microbiota transplantation capsules
Cold, F., Svensson, C. K., Günther, S., Petersen, Andreas Munk, Hansen, Lars Hestbjerg & Helms, Morten, 2022, In: Danish Medical Journal. 69, 2, 10 p., A09210712.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field
Nunes, I., Hansen, Veronika, Bak, Frederik, Bonnichsen, L., Su, J., Hao, X., Raymond, Nelly Sophie, Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Nybroe, O., 2022, In: FEMS Microbiology Ecology. 98, 3, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Bacillus cereus Strain EC9 Primes the Plant Immune System for Superior Biocontrol of Fusarium oxysporum
Madriz Ordenana, Kenneth, Pazarlar, S., Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Zhang, Y., Nielsen, K. L., Hansen, Lars Hestbjerg & Thordal-Christensen, Hans, 2022, In: Plants. 11, 5, 19 p., 687.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Efficacy of Faecal Microbiota Transplant and Rectal Bacteriotherapy in Patients with Recurrent Clostridioides difficile Infection: A Retrospective Cohort Study.
Svensson, C. K., Cold, F., Ribberholt, I., Zangenberg, M., Mirsepasi-Lauridsen, H. C., Petersen, Andreas Munk & Helms, Morten, 2022, In: Cells. 11, 20, 12 p., 3272.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cytokinin-producing plant beneficial bacterium Pseudomonas fluorescens G20-18 primes tomato (Solanum lycopersicum) for enhanced drought stress responses
Mekureyaw, M. F., Pandey, Chandana, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Liu, Fulai, Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Journal of Plant Physiology. 270, 15 p., 153629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The fungal endophyte Penicillium olsonii ML37 reduces Fusarium head blight by local induced resistance in wheat spikes
Rojas, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Esteban, P. & Collinge, David B., 2022, In: Journal of Fungi. 8, 4, 17 p., 345.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The phytonutrient cinnamaldehyde limits intestinal inflammation and enteric parasite infection
Zhu, L., Andersen-Civil, A. I. S., Myhill, L. J., Thamsborg, Stig Milan, Kot, Witold, Krych, Lukasz, Nielsen, Dennis Sandris, Blanchard, A. & Williams, Andrew Richard, 2022, In: Journal of Nutritional Biochemistry. 100, 10 p., 108887.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thermal Endurance by a Hot-Spring-Dwelling Phylogenetic Relative of the Mesophilic Paracoccus
Mondal, N., Roy, C., Chatterjee, S., Sarkar, J., Dutta, S., Bhattacharya, S., Chakraborty, R. & Ghosh, W., 2022, In: Microbiology Spectrum. 10, 6, 25 p., e0160622.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transgenic approaches for plant disease control: Status and prospects 2021
Collinge, David B. & Sarrocco, S., 2022, In: Plant Pathology. 71, 1, p. 207-225 19 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Treatment of bowel diseases with Faecal Microbiota Transplantation
Cold, F., 2022, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 212 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Volatiles produced by Streptomyces spp. delay rot in apples caused by Colletotrichum acutatum
Jepsen, T., Jensen, Birgit & Jørgensen, Niels O. G., 2022, In: Current Research in Microbial Sciences. 3, 7 p., 100121.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
- Published
A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T
Pathiraja, D., Christiansen, L., Park, B., Schultz-Johansen, M., Bang, G., Stougaard, P. & Choi, I. G., 2021, In: Applied and Environmental Microbiology. 87, 12, 19 p., e00230-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A non-antifungal rhizobacterium stimulates plant immunity to protect tomato and Kalanchoe against Fusarium oxysporum and wheat against Zymoseptoria tritici
Madriz Ordenana, Kenneth, Pazarlar, Sercan, Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Nielsen, K. L., Zhang, Y. & Thordal-Christensen, Hans, 2021. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
A novel microcosm to identify inherently competitive microorganisms with the ability to mineralize phytate in solum
Pittroff, S. M., Olsson, S., Doolette, A., Greiner, R., Richardson, A. E. & Nicolaisen, Mette Haubjerg, 2021, In: Soil Ecology Letters. 3, p. 367-382Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel transcription factor UvCGBP1 regulates development and virulence of rice false smut fungus Ustilaginoidea virens
Chen, X., Li, P., Liu, H., Chen, X., Huang, J., Luo, C., Li, G., Hsiang, T., Collinge, David B. & Zheng, L., 2021, In: Virulence. 12, 1, p. 1563-1579 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol
Ntana, F., Bhat, W. W., Johnson, S. R., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Jensen, Birgit & Hamberger, B., 2021, In: Biomolecules. 11, 6, 16 p., 898.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Administration of bovine milk oligosaccharide to weaning gnotobiotic mice inoculated with a simplified infant type microbiota
Jakobsen, L. M. A., Sundekilde, U. K., Andersen, H. J., Kot, Witold, Mejia, J. L. C., Nielsen, Dennis Sandris, Hansen, Axel Kornerup & Bertram, H. C., 2021, In: Microorganisms. 9, 5, 1003.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Oligosaccharide Rich Diet Increases Akkermansia spp. Bacteria in the Equine Microbiota
Lindenberg, F. C., Lützhøft, Ditte Olsen, Krych, Lukasz, Fielden, J., Kot, Witold, Frøkiær, Hanne, van Galen, G., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2021, In: Frontiers in Microbiology. 12, 666039.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistome in the livestock and aquaculture industries: Status and solutions
Zhao, Y., Yang, Q. E., Zhou, X., Wang, F., Muurinen, J., Virta, M. P., Brandt, Kristian Koefoed & Zhu, Y., 2021, In: Critical Reviews in Environmental Science and Technology. 51, 19, p. 2159-2196 38 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Chromosomes Under Changing Environmental Conditions: Editorial
Glinkowska, M., Waldminghaus, T. & Riber, Leise, 2021, In: Frontiers in Microbiology. 12, 3 p., 633466.Research output: Contribution to journal › Editorial › Research
- Published
Cadmium enhances conjugative plasmid transfer to a fresh water microbial community
Pu, Q., Fan, X., Li, H., An, X., Lassen, Simon Bo & Su, J., 2021, In: Environmental Pollution. 268, Part B, 9 p., 115903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Case study on depuration of RAS-produced pikeperch (Sander lucioperca) for removal of geosmin and other volatile organic compounds (VOCs) and its impact on sensory quality
Podduturi, Raju, Petersen, Mikael Agerlin, Vestergaard, M., Hyldig, G. & Jørgensen, Niels O. G., 2021, In: Aquaculture. 530, 9 p., 735754.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5
Kopejtka, K., Zeng, Y., Kaftan, D., Selyanin, V., Gardian, Z., Tomasch, J., Sommaruga, R. & Koblížek, M., 2021, In: Microorganisms. 9, 4, 13 p., 768.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Clonostachys rosea to control plant diseases
Jensen, Dan Funck, Dubey, M., Jensen, Birgit & Karlsson, M., 2021, Microbial bioprotectants for plant disease management. p. 429-471 45 p. (Burleigh Dodds series in agricultural science).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Co-effect of cadmium and iron oxide nanoparticles on plasmid-mediated conjugative transfer of antibiotic resistance genes: [incl. Corrigendum]
Pu, Q., Fan, X. T., Sun, A. Q., Pan, T., Li, H., Lassen, Simon Bo, An, X. L. & Su, J. Q., 2021, In: Environment International. 152, 9 p., 106453.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)
Garcia-Lemos, A. M., Hennessy, Rosanna Catherine, Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology Resource Announcements. 10, 8, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment
Bak, Frederik, Henriksen, Alexander Pil, Nielsen, Tue Kjærgaard & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology resource announcements. 10, 44, 2 p., e0075421.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18
Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Disentangling the abiotic and biotic components of AMF suppressive soils
Cruz-Paredes, C., Diera, T., Davey, M., Rieckmann, Maria Monrad, Christensen, P., Dela Cruz, Majbrit, Laursen, Kristian Holst, Joner, E. J., Christensen, Jan H., Nybroe, O. & Jakobsen, Iver, 2021, In: Soil Biology and Biochemistry. 159, 11 p., 108305.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Earthworm gut: An overlooked niche for anaerobic ammonium oxidation in agricultural soil
Li, H., Yang, X., Wang, J., Zhou, G., Zhang, Y., Lassen, Simon Bo, Zhu, Y. & Su, J., 2021, In: Science of the Total Environment. 752, 9 p., 141874.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergence and Co-selection of Antibiotic Resistance in the Environment
Lassen, Simon Bo, 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 243 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Browne, Patrick Denis, Cold, F., Petersen, Andreas Munk, Halkjær, S. I., Christensen, A. H., Günther, S. & Hansen, Lars Hestbjerg, 2021, In: Gut Microbes. 13, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae
Olsen, Nikoline S., Nielsen, K. J., Plöger, M., Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Archives of Virology. 166, p. 593-599 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic Memories: The Hidden Drivers of Bacterial Persistence?
Riber, Leise & Hansen, Lars Hestbjerg, 2021, In: Trends in Microbiology. 29, 3, p. 190-194 5 p.Research output: Contribution to journal › Editorial › Research
- Published
Evolutionary conserved nitric oxide synthesis proteins responding to bacterial MAMPs are located to the endoplasmic reticulum and are also involved in secondary metabolite synthesis and sterol production
Zheng, W., Li, H., Ipcho, S., Fang, W., Hennessy, Rosanna Catherine, Hansen, B. Ø., Lu, G., Wang, Z., Newman, M. & Olsson, S., 2021, Cold Spring Harbor Laboratory, 43 p. (bioRxiv).Research output: Working paper › Preprint › Research
- Published
Exposure to heavy metal and antibiotic enriches antibiotic resistant genes on the tire particles in soil
Ding, J., Zhu, D., Wang, Y., Wang, H., Liang, A., Sun, H., Chen, Q., Lassen, Simon Bo, Lv, M. & Chen, L., 2021, In: Science of the Total Environment. 792, 9 p., 148417.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Extension of Plant Phenotypes by the Foliar Microbiome
Hawkes, C. V., Kjøller, Rasmus, Raaijmakers, J. M., Riber, Leise, Christensen, Svend, Rasmussen, Simon, Christensen, Jan H., Dahl, A. B., Westergaard, Jesper Cairo, Nielsen, Mads, Brown-Guedira, G. & Hansen, Lars Hestbjerg, 2021, In: Annual Review of Plant Biology. 72, p. 823-846 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Functional Characterization of Type III-A CRISPR-Cas in a Clinical Human Methicillin-R Staphylococcus aureus Strain
Yang, L., Mikkelsen, K., Grané, O. L. I., Wang, Z., Tang, Y., Jiao, X., Ingmer, Hanne, Høyland-Kroghsbo, Nina Molin & Li, Q., 2021, In: CRISPR Journal. 4, 5, p. 686-698Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson, J. F., Castellani, L. G., Draghi, W. O., Mogro, E. G., Wibberg, D., Winkler, A., Hansen, Lars Hestbjerg, Schluüter, A., Puühler, A., Kalinowski, J., Tejerizo, G. A. T. & Pistorio, M., 2021, In: FEMS Microbiology Ecology. 97, 1, fiaa235.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High throughput in vitro characterization of pectins for pig(let) nutrition
Wiese, M., Hui, Y., Holck, J., Sejberg, J. J. P., Daures, C., Maas, E., Kot, Witold, Borne, J. M., Khakimov, Bekzod, Thymann, Thomas & Nielsen, Dennis Sandris, 2021, In: BMC Animal Microbiome. 3, 15 p., 69.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution
Agergaard, J., Zillmer, M. C. F., Castro-Mejía, J. L., Mertz, K., Kot, Witold, Højfeldt, Grith Stougaard, van Hall, Gerrit, Nielsen, Dennis Sandris, Schjerling, Peter & Holm, Lars Morten, 2021, In: Scientific Reports. 11, 15 p., 16423.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of Environmental Factors on Occurrence of Cyanobacteria and Abundance of Saxitoxin-Producing Cyanobacteria in a Subtropical Drinking Water Reservoir in Brazil
Moraes, M. A. B., Rodrigues, R. A. M., Schlüter, L., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. C., 2021, In: Water. 13, 12, p. 1716Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inter-vendor variance of enteric eukaryotic DNA viruses in specific pathogen free C57BL/6N mice
Rasmussen, Torben Sølbeck, Jakobsen, Rasmus Riemer, Castro-Mejía, J. L., Kot, Witold, Thomsen, Allan Randrup, Vogensen, Finn Kvist, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2021, In: Research in Veterinary Science. 136, p. 1-5 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolate-Specific Effect of Entomopathogenic Endophytic Fungi on Population Growth of Two-Spotted Spider Mite (Tetranychus urticae Koch) and Levels of Steroidal Glycoalkaloids in Tomato
Rasool, S., Cárdenas, Pablo D., Pattison, David, Jensen, Birgit & Meyling, Nicolai Vitt, 2021, In: Journal of Chemical Ecology. 47, 4-5, p. 476–488 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community
Cyriaque, V., Madsen, Jonas Stenløkke, Fievez, L., Leroy, B., Hansen, Lars Hestbjerg, Bureau, F., Sørensen, Søren Johannes & Wattiez, R., 2021, In: Frontiers in Microbiology. 12, 14 p., 655903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic analysis of a keratin-degrading bacterial consortium provides insight into the keratinolytic mechanisms
Kang, D., Huang, Y., Nesme, Joseph, Herschend, J., Jacquiod, S., Kot, Witold, Hansen, Lars Hestbjerg, Lange, L. & Sørensen, Søren Johannes, 2021, In: Science of the Total Environment. 761, 9 p., 143281.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay
Alanin, K. W. S., Forero Junco, Laura Milena, Jørgensen, J. B., Nielsen, Tue Kjærgaard, Rasmussen, Morten Arendt, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Viruses. 13, 6, 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Method for producing the sesquiterpene viridiflorol with a fungal enzyme
Ntana, F., Collinge, David B., Hamberger, B. R., Bhat, W. W., Johnson, S. R., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2021, IPC No. A61K-000/00, C12N-009/88, Patent No. WO2021050841-A2, 11 Sep 2020Research output: Patent
- Published
Microbial water quality in pangasius and tilapia aquaculture systems in five regions of Bangladesh
Islam, S. R., Ahsan, M. E., Haque, M. M., Razzak, M. A., Schlüter, L., Podduturi, Raju & Jørgensen, Niels O. G., 2021, In: Malaysian Journal of Microbiology. 17, 4, p. 435-451 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Monitoring of saxitoxin production in lakes in Denmark by molecular, chromatographic and microscopic approaches
Podduturi, Raju, Schlüter, L., Liu, T., Osti, J. A. S., Moraes, M. D. A. B. & Jørgensen, Niels O. G., 2021, In: Harmful Algae. 101, 101966.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis
Braga, L. P. P., Coutinho, F. H., Amgarten, D. E., Kot, Witold, Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2021, In: Environmental Microbiology Reports. 13, 3, p. 348-354 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Partial substitution of meat with insect (Alphitobius diaperinus) in a carnivore diet changes the gut microbiome and metabolome of healthy rats
Lanng, S. K., Zhang, Yichang, Christensen, K. R., Hansen, Axel Kornerup, Nielsen, Dennis Sandris, Kot, Witold & Bertram, H. C., 2021, In: Foods. 10, 8, 14 p., 1814.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phosphate-solubilising microorganisms for improved crop productivity: a critical assessment
Raymond, Nelly Sophie, Gomez-Munoz, B., van der Bom, Frederik, Nybroe, O., Jensen, Lars Stoumann, Müller-Stöver, Dorette Sophie, Oberson, A. & Richardson, A. E., 2021, In: New Phytologist. 229, 3, p. 1268-1277 10 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Pre-clinical evaluation of the effect of co-medication with antibiotics and oral steroids in Gottingen Minipigs on the biological activity of the probiotic medicinal product TSO (Trichuris suis ova)
Prosberg, M. V., Kringel, H., Kapel, J. S., Kapel, B. S., Fredensborg, Brian Lund, Petersen, Andreas Munk, Hansen, Lars Hestbjerg, Nielsen, Dennis Sandris, Kapel, H. S., Jacobsen, K. R., Mikkelsen, L. F. & Kapel, Christian, 2021, In: Parasitology Research. 120, p. 743-746Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
Wong, G. C. L., Antani, J. D., Lele, P., Nan, B., Kühn, M. J., Persat, A., Bru, J-L., Høyland-Kroghsbo, N. M., Siryaporn, A., Conrad, J., Carrara, F., Yawata, Y., Stocker, R., Brun, Y., Whitfield, G., Lee, C., de Anda, J., Schmidt, W. C., Golestanian, R., O'Toole, G. A. & 21 others, , 2021, In: Physical Biology. 18, 5, 50 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Root distribution in intercropping systems–a comparison of DNA based methods and visual distinction of roots
Hassan, A., Dresbøll, Dorte Bodin, Rasmussen, Camilla Ruø, Lyhne-Kjærbye, A., Nicolaisen, Mette Haubjerg, Stokholm, M. S., Lund, O. S. & Thorup-Kristensen, Kristian, 2021, In: Archives of Agronomy and Soil Science. 67, 1, p. 15-28Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seed inoculations with entomopathogenic fungi affect aphid populations coinciding with modulation of plant secondary metabolite profiles across plant families
Rasool, S., Vidkjær, Nanna Hjort, Hooshmand, K., Jensen, Birgit, Fomsgaard, I. S. & Meyling, Nicolai Vitt, 2021, In: New Phytologist. 229, 3, p. 1715-1727 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Short-term toxicity assessment of a triazine herbicide (terbutryn) underestimates the sensitivity of soil microorganisms
Fernández-Calviño, D., Rousk, J., Bååth, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2021, In: Soil Biology and Biochemistry. 154, 108130.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Site-specific, silicon-induced structural and molecular defence responses against powdery mildew infection in roses
Shetty, R., Jensen, Birgit, Shelton, D., Jørgensen, Kirsten, Pedas, P. & Jørgensen, Hans Jørgen Lyngs, 2021, In: Pest Management Science. 77, 10, p. 4545-4554Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Subclinical necrotizing enterocolitis-induced systemic immune suppression in neonatal preterm pigs
Ren, S., Pan, X., Hui, Y., Kot, Witold, Gao, Fei, Sangild, Per Torp & Nguyen, Duc Ninh, 2021, In: American Journal of Physiology - Gastrointestinal and Liver Physiology. 321, 1, p. G18-G28Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Succession of the fungal endophytic microbiome of wheat is dependent on tissue-specific interactions between host genotype and environment
Latz, Meike, Kerrn, Mads Herbert, Sørensen, Helle, Collinge, David B., Jensen, Birgit, Brown, J. K. M., Madsen, A. M. & Jørgensen, Hans Jørgen Lyngs, 2021, In: Science of the Total Environment. 759, 11 p., 143804.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
Hui, Y., Tamez-Hidalgo, P., Cieplak, T., Satessa, G. D., Kot, Witold, Kjærulff, S., Nielsen, M. O., Nielsen, Dennis Sandris & Krych, Lukasz, 2021, In: Journal of Animal Science and Biotechnology. 12, 14 p., 85.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Systematic review with meta-analysis: encapsulated faecal microbiota transplantation - evidence for clinical efficacy
Cold, F., Baunwall, S. M. D., Dahlerup, J. F., Petersen, Andreas Munk, Hvas, C. L. & Hansen, Lars Hestbjerg, 2021, In: Therapeutic Advances in Gastroenterology. 14, 19 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The aerobiome uncovered: Multi-marker metabarcoding reveals potential drivers of turn-over in the full microbial community in the air
de Groot, G. A., Geisen, S., Wubs, E. R. J., Meulenbroek, L., Laros, I., Snoek, L. B., Lammertsma, D. R., Hansen, Lars Hestbjerg & Slim, P. A., 2021, In: Environment International. 154, 106551.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Nielsen, Tue Kjærgaard, Horemans, B., Lood, C., T’Syen, J., van Noort, V., Lavigne, R., Ellegaard-Jensen, L., Hylling, Ole, Aamand, J., Springael, D. & Hansen, Lars Hestbjerg, 2021, In: Scientific Reports. 11, 12 p., 18943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of Quorum sensing inhibitors on the evolution of CRISPR-based phage immunity in Pseudomonas aeruginosa
Broniewski, J. M., Chisnall, M. A. W., Høyland-Kroghsbo, Nina Molin, Buckling, A. & Westra, E. R., 2021, In: I S M E Journal. 15, p. 2465-2473Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of faecal microbiota transplantation on abdominal pain, stool frequency, and stool form in patients with moderate-to-severe irritable bowel syndrome: results from a randomised, double-blind, placebo-controlled study
Madsen, A. M. A., Halkjaer, S. I., Christensen, A. H., Guenther, S., Browne, Patrick Denis, Kallemose, T., Hansen, Lars Hestbjerg & Petersen, Andreas Munk, 2021, In: Scandinavian Journal of Gastroenterology. 56, 7, p. 761-769 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The fungal endophyte Penicillium olsonii ML37 reduces Fusarium head blight by local induced resistance in wheat spikes
Rojas Tayo, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Esteban, P. & Collinge, David B., 2021. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
The gut microbiome and abiotic factors as potential determinants of postprandial glucose responses: A single-arm meal study
Nestel, N., Hvass, J. D., Bahl, M. I., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Dragsted, Lars Ove & Roager, Henrik Munch, 2021, In: Frontiers in Nutrition. 7, 9 p., 594850.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Yellow Tainting of Flesh in Pangasius (Pangasianodon hypophthalmus): Origin of the Color and Procedures for Removal
Islam, S., Haque, M., Razzak, M., Schlüter, L., Ahsan, E., Podduturi, Raju & Jørgensen, Niels O. G., 2021, In: Aquatic Science and Engineering. 36, 4, p. 193-201Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Serratia inhibens sp. nov., a new antifungal species isolated from potato (Solanum tuberosum)
Hennessy, Rosanna Catherine, Dichmann, S. I., Martens, Helle Jakobe, Zervas, A. & Stougaard, P., 17 Jun 2020, In: International Journal of Systematic and Evolutionary Microbiology. 70, 7, p. 4204-4211 8 p., 004270.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association of Dietary Patterns with Testicular Function in Young Danish Men
Nassan, F. L., Jensen, T. K., Priskorn, L., Halldorsson, T. I., Chavarro, J. E. & Jørgensen, Niels O. G., 21 Feb 2020, In: JAMA Network Open. 3, 2, 16 p., e1921610.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Plant Pathogens
Perssona, P., Pirhonen, M. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 89-106 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Biological Control of Plant Diseases
Tronsmo, A., Collinge, David B., Alabouvette, C. & Jensen, Dan Funck, 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 289-306 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Biotechnology for Plant Disease Control
Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 321-329 9 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Diagnosis of Plant Diseases
Munk, Lisa, Collinge, David B., Djurle, A. & Tronsmo, A. M., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 164-181 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Disease Management Strategies Using Host Resistance
Munk, Lisa, Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 307-320 14 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Geosmin fluctuations and potential hotspots for elevated levels in recirculated aquaculture system (RAS): a case study from pikeperch (Stizostedion lucioperca) production in Denmark
Podduturi, Raju, Petersen, Mikael Agerlin, Vestergaard, M. & Jørgensen, Niels O. G., 1 Jan 2020, In: Aquaculture. 514, p. 1-8 734501.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
History of plant pathology.
Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 11-18 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Defence Against Pathogens
Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 205-215 11 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Health Legislation
Tronsmo, A. M., Collinge, David B. & Yuen, J., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 366-376 11 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Pathology and Plant Diseases
Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 1-439 439 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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Race Specificity and Plant Immunity
Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 216-233 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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The Disease Cycle and Lifestyles
Tronsmo, A. M., Munk, Lisa, Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 19-36 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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What is a Plant Disease?
Tronsmo, A. M., Munk, Lisa, Djurle, A., Yuen, J. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 3-10 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
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24 Messages on a Sustainable Career in Research at UCPH
Larsen, K. R. (ed.), Wegener, H. C., Stein, A., Bach, A., Williams, A. R., Gall, C., Gravert, C., Gloriam, D. E., Lorenzen, E., Yvanez, E., Cappellini, E., Poulsen, F., Mortensen, J., Bentzen, J. S., Shik, J. Z., Miskowiak, K. W., Elgaard, K. K. E., Jønsson, K. A., Won, K. J., Nørgaard, L. C. & 9 others, , 2020, University of Copenhagen. 31 p.Research output: Book/Report › Report › Communication
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Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina
Julia Estrella, M., Florencia Fontana, M., Cumpa Velasquez, L. M., Torres Tejerizo, G. A., Diambra, L., Hansen, Lars Hestbjerg, Pistorio, M. & Ines Sannazzaro, A., 2020, In: Systematic and Applied Microbiology. 43, 1, 8 p., 126044.Research output: Contribution to journal › Journal article › Research › peer-review
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A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement
Zhang, H., Xie, J., Fu, Y., Cheng, J., Qu, Z., Zhao, Z., Cheng, S., Chen, T., Li, B., Wang, Q., Liu, X., Tian, B., Collinge, David B. & Jiang, D., 2020, In: Molecular Plant. 13, 10, p. 1420-1433 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice
Moreno-Indias, I., Lundberg, R., Krych, Lukasz, Metzdorff, S. B., Kot, Witold, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2020, In: Frontiers in Microbiology. 11, 15 p., 1336.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Multifunctional Polysaccharide Utilization Gene Cluster in Colwellia echini Encodes Enzymes for the Complete Degradation of κ-Carrageenan, ι-Carrageenan, and Hybrid β/κ-Carrageenan
Christiansen, L., Pathiraja, D., Bech, P. K., Schultz-Johansen, M., Hennessy, Rosanna Catherine, Teze, D., Choi, I. & Stougaard, P., 2020, In: mSphere. 5, 1, 16 p., e00792-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential
Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus
Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination
Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibacterial activity of oxytetracycline on microbial ecology of Nile tilapia (Oreochromis niloticus) gastrointestinal tract under laboratory condition
Mannan, M., Islam, S. R., Osman, M. H., Rahman, M. K., Uddin, M. N., Kamal, M. & Reza, M. S., 2020, In: Aquaculture Research. 51, 5, p. 2125-2133 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bakteriofagterapi
Cold, F., Olsen, N. S., Djurhuus, Amaru Miranda & Djurhuus, Amaru Miranda, 2020, In: Ugeskrift for Laeger. 12, 9 p., V01200041.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bioaugmented Sand Filter Columns Provide Stable Removal of Pesticide Residue From Membrane Retentate
Ellegaard-Jensen, L., Schostag, M. D., Fini, M. N., Badawi, N., Gobbi, Alex, Aamand, J. & Hansen, Lars Hestbjerg, 2020, In: Frontiers in Water. 2, 13 p., 603567.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biodegradation kinetics testing of two hydrophobic UVCBs - potential for substrate toxicity supports testing at low concentrations
Hammershoj, R., Sjøholm, K. K., Birch, H., Brandt, Kristian Koefoed & Mayer, P., 2020, In: Environmental Science Processes & Impacts. 22, 11, p. 2172-2180 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community
Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture
Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom
Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cross-Frontier Communication: Phytohormone Functions at the Plant-Microbe Interface and Beyond
Berger, S., Van Wees, S. C. M., Nybroe, O. & Grosskinsky, D. K., 2020, In: Frontiers in Plant Science. 11, 2 p., 386.Research output: Contribution to journal › Editorial › Research
- Published
Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs
Kot, Witold, Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, Alexander Byth, Moineau, S., Swairjo, M. A. & Hansen, Lars Hestbjerg, 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil
Zhang, Y., Hao, X., Garcia-Lemos, A. M., Nunes, I., Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Applied and Environmental Microbiology. 86, 10, 16 p., ARTN e02969-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different sensitivity of a panel of Rhizophagus isolates to AMF-suppressive soils
Cruz-Paredes, C., Jakobsen, Iver & Nybroe, O., 2020, In: Applied Soil Ecology. 155, 5 p., 103662.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Digging Deeper for Agricultural Resources, the Value of Deep Rooting
Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E., Crews, T. E., Hinsinger, P., Kirkegaard, J., Pierret, A. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 406-417Research output: Contribution to journal › Review › Research › peer-review
- Published
Discovery of a bacterial gene cluster for deglycosylation of the toxic potato steroidal glycoalkaloids α-chaconine and α-solanine
Hennessy, Rosanna Catherine, Nielsen, S. D., Greve-Poulsen, M., Larsen, L. B., Bandsholm, O. & Stougaard, P., 2020, In: Journal of Agricultural and Food Chemistry. 68, 5, p. 1390-1396 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dysbiosis in the Gut Microbiota of Soil Fauna Explains the Toxicity of Tire Tread Particles
Ding, J., Zhu, D., Wang, H., Lassen, Simon Bo, Chen, Q., Li, G., Lv, M. & Zhu, Y., 2020, In: Environmental Science & Technology. 54, 12, p. 7450-7460 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities
Cavalieri, Andrea, Bak, Frederik, Garcia-Lemos, A. M., Weiner, Jacob, Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 14 p., 1045.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of reduced organic matter loading through membrane filtration on the microbial community dynamics in recirculating aquaculture systems (RAS) with Atlantic salmon parr (Salmo salar)
Fossmark, R. O., Vadstein, O., Rosten, T. W., Bakke, I., Koseto, D., Bugten, A. V., Helberg, G. A., Nesje, J., Jørgensen, Niels O. G., Raspati, G., Azrague, K., Østerhus, S. W. & Attramadal, K. J. K., 2020, In: Aquaculture. 524, 12 p., 735268.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment
Olsen, Nikoline S., Forero Junco, Laura Milena, Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: Viruses. 12, 9, 21 p., 986.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exposing Deep Roots: A Rhizobox Laboratory
Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 418-419Research output: Contribution to journal › Journal article › Research
- Published
Exposure of CuO nanoparticles and their metal counterpart leads to change in the gut microbiota and resistome of collembolans
Ding, J., Liu, J., Chang, X. B., Zhu, D. & Lassen, Simon Bo, 2020, In: Chemosphere. 258, 10 p., 127347.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model
Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Kot, Witold, Castro-Mejiá, J. L., Zuffa, S., Swann, J. R., Hansen, Lars Hestbjerg, Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2020, In: Gut. 69, 12, p. 2122-2130 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fecal Microbiota Transplantation in the Treatment of Chronic Pouchitis: A Systematic Review
Cold, F., Kousgaard, S. J., Halkjaer, S. I., Petersen, Andreas Munk, Nielsen, H. L., Thorlacius-Ussing, O. & Hansen, Lars Hestbjerg, 2020, In: Microorganisms. 8, 9, 17 p., 1433.Research output: Contribution to journal › Review › Research › peer-review
- Published
Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, Tina Vicky Alstrup, Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In: The Journal of Immunology. 204, 11, p. 3042-3055 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
First record of a non-indigenous lanternbelly, Acropoma argentistigma (Teleostei: Perciformes: Acropomatidae) from the Bay of Bengal coast of Bangladesh
Hanif, M. A., Siddik, M. A. B., Islam, S. R., Islam, M. A. & Sarower-E-mahfuj, M., 2020, In: Egyptian Journal of Aquatic Biology and Fisheries. 24, 7, p. 677-684 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Free‐Standing NiO Nanosheets as Non‐Enzymatic Electrochemical Sensors
Qin, Y., Chen, F., Halder, A. & Zhang, M., 2020, In: ChemistrySelect. 5, 8, p. 2424-2429Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungal-associated molecules induce key genes involved in the biosynthesis of the antifungal secondary metabolites nunamycin and nunapeptin in the biocontrol strain Pseudomonas fluorescens In5
Christiansen, L., Alanin, K. W. S., Phippen, C., Olsson, S., Stougaard, P. & Hennessy, Rosanna Catherine, 2020, In: Applied and Environmental Microbiology. 86, 14 p., e01284-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fusarium head blight modifies fungal endophytic communities during infection of wheat spikes
Rojas, E. C., Sapkota, R., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Henriksson, T., Jørgensen, L. N., Nicolaisen, M. & Collinge, David B., 2020, In: Microbial Ecology. 79, p. 397-408 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms
Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic variation and evolutionary history of a mycorrhizal fungus regulate the currency of exchange in symbiosis with the food security crop cassava
Savary, R., Dupuis, C., Masclaux, F. G., Mateus, I. D., Rojas, E. C. & Sanders, I. R., 2020, In: I S M E Journal. 14, 6, p. 1333-1344 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High starter phosphorus fertilization facilitates soil phosphorus turnover by promoting microbial functional interaction in an arable soil
Li, H., Bi, Q., Yang, K., Lassen, Simon Bo, Zheng, B., Cui, L., Zhu, Y. & Ding, K., 2020, In: Journal of Environmental Sciences. 94, p. 179-185Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Housing temperature influences exercise training adaptations in mice
Raun, Steffen Henning, Henriquez-Olguín, Carlos, Karavaeva, Iuliia, Ali, Mona Sadek, Møller, Lisbeth L V, Kot, Witold, Castro-Mejía, J. L., Nielsen, Dennis Sandris, Gerhart-Hines, Zach, Richter, Erik A. & Sylow, Lykke, 2020, In: Nature Communications. 11, 16 p., 1560.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification and Characterization of a β-N-Acetylhexosaminidase with a Biosynthetic Activity from the Marine Bacterium Paraglaciecola hydrolytica S66T
Visnapuu, T., Teze, D., Kjeldsen, C., Lie, A., Duus, J. Ø., André-Miral, C., Pedersen, L. H., Stougaard, P. & Svensson, B., 2020, In: International Journal of Molecular Sciences (Online). 21, 2, 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of Root-Associated Bacteria That Influence Plant Physiology, Increase Seed Germination, or Promote Growth of the Christmas Tree Species Abies nordmanniana
Garcia-Lemos, A. M., Grosskinsky, D. K., Akhtar, S. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Nybroe, O. & Veierskov, Bjarke, 2020, In: Frontiers in Microbiology. 11, 15 p., 566613.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach
Latz, Meike, Jensen, Birgit, Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2020, In: Biological Control. 141, p. 1-8 104128.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios
Braga, L. P. P., Spor, A., Kot, Witold, Breuil, M., Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2020, In: Microbiome. 8, 1, 14 p., 52.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Aguilar, M. O., Gobbi, Alex, Browne, Patrick Denis, Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Semorile, L. & Pistorio, M., 2020, In: PLoS ONE. 15, 12, 19 p., 0243848.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling
Manzotti, A., Bergna, A., Burow, Meike, Jørgensen, Hans Jørgen Lyngs, Cernava, T., Berg, G., Collinge, David B. & Jensen, Birgit, 2020, In: FEMS Microbiology Ecology. 96, 5, 16 p., fiaa052.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrating bioinformatics in the teaching and redesign of the course Applied Microbiology
Hennessy, Rosanna Catherine, 2020, Improving University Science Teaching and Learning: Pedagogical Projects 2020. Christiansen, F. V. & Arias, A. A. (eds.). Department of Science Education, University of Copenhagen, Vol. 15. p. 147-167 21 p. (Improving University Science Teaching and Learning - Pedagogical Projects, Vol. 15).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Interaction between endophytic Proteobacteria strains and Serendipita indica enhances biocontrol activity against fungal pathogens
del Barrio-Duque, A., Samad, A., Nybroe, O., Antonielli, L., Sessitsch, A. & Compant, S., 2020, In: Plant and Soil. 451, 1-2, p. 277-305 29 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats
Thøgersen, R., Castro-Mejía, J. L., Sundekilde, U. K., Hansen, Lars Hestbjerg, Gray, N., Kuhnle, G., Jørgensen, Niklas Rye, Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2020, In: Food Chemistry. 331, 10 p., 127291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus"
Kyrkou, I., Carstens, Alexander Byth, Ellegaard-Jensen, L., Kot, Witold, Zervas, A., Djurhuus, Amaru Miranda, Neve, H., Franz, C. M. A. P., Hansen, M. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 10 p., 8763.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial resistome
Rutgersson, C., Ebmeyer, S., Lassen, Simon Bo, Karkman, A., Fick, J., Kristiansson, E., Brandt, Kristian Koefoed, Flach, C. & Larsson, D. G. J., 2020, In: Environment International. 137, 12 p., 105339.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mechanisms of Pathogenicity
Collinge, David B. & Taylor, P., 2020, Fungal-Like Plant Pathogens. CABI International, p. 185-204 20 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function: [incl. Erratum]
Reddington, K., Eccles, D., O'Grady, J., Drown, D. M., Hansen, L. H., Nielsen, T. K., Ducluzeau, A-L., Leggett, R. M., Heavens, D., Peel, N., Snutch, T. P., Bayega, A., Oikonomopoulos, S., Ragoussis, J., Barry, T., van der Helm, E., Jolic, D., Richardson, H., Jansen, H., Tyson, J. R. & 2 others, , 2020, In: GigaScience. 9, 6, 12 p., 053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Occurrence of cyanobacteria and microcystins in hydroelectric reservoirs used for fish farming
Falcone-Dias, M. F., Rodrigues, M. V., Nielsen, J. L., De Jonge, N., Jørgensen, Niels O. G., Alonso, D. P., David, G. S., Da Silva, R. J. & Araújo, J. P., 2020, In: Journal of Water and Health. 18, 6, p. 983-994 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae
Pedersen, Julie Stenberg, Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold, Neve, H. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 237-244 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures
Castro-Mejia, J. L., Khakimov, B., Krych, L., Bülow, J., Bechshøft, R. L., Højfeldt, G., Mertz, K. H., Garne, E. S., Schacht, S. R., Ahmad, H. F., Kot, W., Hansen, L. H., Perez-Cueto, F. J. A., Lind, M. V., Lassen, A. J., Tetens, I., Jensen, T., Reitelseder, S., Jespersen, A. P., Holm, L. & 2 others, , 2020, In: Aging Cell. 19, 3, 13 p., e13105.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant Disease Management in the Post-genomic Era: From Functional Genomics to Genome Editing
Sarrocco, S., Herrera-estrella, A. & Collinge, David B., 2020, In: Frontiers in Microbiology. 11, p. 1-2 107.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Plant Endophytes
Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Rojas, E. C., Latz, Meike, Manzotti, A., Ntana, F. & Jensen, Birgit, 2020, eLS. Wiley, 9 p. (eLS).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Pathology and Plant Diseases
Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 2020, CABI Publishing. 400 p.Research output: Book/Report › Book › Education › peer-review
- Published
Plant pathology in a changing world
Yuen, J., Collinge, David B., Djurle, A. & Tronsmo, A. M., 2020, Plant Pathology and Plant Diseases. CABI International, p. 379-386 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier
Zeng, Y., Chen, X., Madsen, A. M., Zervas, A., Nielsen, Tue Kjærgaard, Andrei, A., Lund-Hansen, L. C., Liu, Y. & Hansen, Lars Hestbjerg, 2020, In: mBio. 11, 6, 22 p., e02641-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Potential feedback mediated by soil microbiome response to warming in a glacier forefield
Wang, Y., Ma, A., Liu, G., Ma, J., Wei, J., Zhou, H., Brandt, Kristian Koefoed & Zhuang, G., 2020, In: Global Change Biology. 26, 2, p. 697-708Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Presentation of Three Novel Tailed Phages Targeting Multiple Strains of Pseudomonas syringae
Jørgensen, J. B., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Kot, Witold, Neve, H., Morris, C. E. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 245-250 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pretreatment Prevotella-to-Bacteroides ratio and salivary amylase gene copy number as prognostic markers for dietary weight loss
Hjorth, Mads Fiil, Christensen, Lars, Larsen, T. M., Roager, Henrik Munch, Krych, Lukasz, Kot, Witold, Nielsen, Dennis Sandris, Ritz, C. & Astrup, A., 2020, In: American Journal of Clinical Nutrition. 111, 5, p. 1079-1086 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling
Eriksen, A. M. H., Puetz, Lara Christine, Rocha, C., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2020, In: STAR: Science & Technology of Archaeological Research. 6, 1, p. 1-15 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition
Castro-Mejía, J. L., O’Ferrall, S., Krych, Lukasz, O’Mahony, E., Namusoke, H., Lanyero, B., Kot, Witold, Nabukeera-Barungi, N., Michaelsen, Kim F., Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte & Nielsen, Dennis Sandris, 2020, In: Gut Microbes. 11, 4, p. 855-867 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
Gobbi, Alex, Kyrkou, I., Filippi, E., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 13 p., 681.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seed inoculation with Penicillium bilaiae and Bacillus simplex affects the nutrient status of winter wheat
Hansen, Veronika, Bonnichsen, L., Nunes, I., Sexlinger, K., Lopez, S. R., van der Bom, Frederik, Nybroe, O., Nicolaisen, Mette Haubjerg & Jensen, Lars Stoumann, 2020, In: Biology and Fertility of Soils. 56, 1, p. 97-109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selection of fungal endophytes with biocontrol potential against Fusarium head blight in wheat
Rojas, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Esteban, P., Ding, Y. & Collinge, David B., 2020, In: Biological Control. 144, 9 p., 104222.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial and temporal variability of cyanobacteria in two subtropical reservoirs: community composition, molecular and cyanotoxin analyses
De Almeida Bispo Moraes, M., 2020, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 128 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin
Hao, X., Zhu, Y., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2020, In: Frontiers in Microbiology. 10, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements
Browne, Patrick Denis, Kot, Witold, Jørgensen, T. S. & Hansen, Lars Hestbjerg, 2020, Horizontal Gene Transfer: Methods and Protocols. Cruz, F. D. L. (ed.). Humana Press, p. 253-264 (Methods in Molecular Biology, Vol. 2075).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The environmental occurrence of Pseudomonas aeruginosa
Crone, S., Vives-Flórez, M., Kvich, Lasse Andersson, Saunders, A. M., Malone, M., Nicolaisen, Mette Haubjerg, Martínez-García, E., Rojas-Acosta, C., Catalina Gomez-Puerto, M., Calum, Henrik Pierre, Whiteley, M., Kolter, R. & Bjarnsholt, Thomas, 2020, In: APMIS. 128, 3, p. 220-231Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transglycosylating β-d-galactosidase and α-l-fucosidase from Paenibacillus sp. 3179 from a hot spring in East Greenland
Thøgersen, M. S., Christensen, S. J., Jepsen, M., Pedersen, L. H. & Stougaard, P., 2020, In: MicrobiologyOpen. 9, 3, 15 p., e980.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae
Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Neve, H., Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 251-259 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology
Hylling, O., Carstens, Alexander Byth, Kot, Witold, Hansen, M., Neve, H., Franz, C. M. A. P., Johansen, A., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development
Garcia-Lemos, A. M., Gobbi, Alex, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 17 p., 198.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation
Hylling, O., Nikbakht Fini, M., Ellegaard-Jensen, L., Muff, J., Madsen, H. T., Aamand, J. & Hansen, Lars Hestbjerg, 1 Dec 2019, In: Science of the Total Environment. 694, p. 1-12 133710.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal pollution and co-selection for antibiotic resistance: A microbial palaeontology approach
Dickinson, A. W., Power, A., Hansen, M. G., Brandt, Kristian Koefoed, Piliposian, G., Appleby, P., O'Neill, P. A., Jones, R. T., Sierocinski, P., Koskella, B. & Vos, M., Nov 2019, In: Environment International. 132, p. 1-10 105117.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp
Zervas, A., Zeng, Y., Madsen, A. M. & Hansen, Lars Hestbjerg, 1 Oct 2019, In: Genome Biology and Evolution. 11, 10, p. 2895-2908Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil biota, antimicrobial resistance and planetary health
Zhu, Y. G., Zhao, Y., Zhu, D., Gillings, M., Penuelas, J., Ok, Y. S., Capon, A. & Banwart, S., Oct 2019, In: Environment International. 131, p. 1-7 105059.Research output: Contribution to journal › Review › Research › peer-review
- Published
Grey water treatment in stacked multi-layer reactors with passive aeration and particle trapping
Prajapati, B., Jensen, Marina Bergen, Jørgensen, Niels O. G. & Petersen, N. B., 15 Sep 2019, In: Water Research. 161, p. 181-190Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal-induced co-selection of antibiotic resistance genes in the gut microbiota of collembolans
Ding, J., An, X. L., Lassen, Simon Bo, Wang, H. T., Zhu, D. & Ke, X., 15 Sep 2019, In: Science of the Total Environment. 683, p. 210-215Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of biochar amendments on antibiotic resistome of the soil and collembolan gut
Ding, J., Yin, Y., Sun, A. Q., Lassen, Simon Bo, Li, G., Zhu, D. & Ke, X., 5 Sep 2019, In: Journal of Hazardous Materials. 377, p. 186-194Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Root-Associated Microbial Communities of Abies nordmanniana: Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth
Garcia-Lemos, A. M., Großkinsky, D. K., Stokholm, M. S., Lund, O. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., Aug 2019, In: Frontiers in Microbiology. 10, p. 1-16 1937.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Imaging Gene Expression Dynamics in Pseudomonas fluorescens In5 during Interactions with the Fungus Fusarium graminearum PH-1
Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 20 Jun 2019, In: Bio-protocol. 9, 12, 14 p., e3264.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNA Stable Isotope Probing of Potential Feammox Population in Paddy Soil
Li, H., Su, J. Q., Yang, X. R., Zhou, G. W., Lassen, Simon Bo & Zhu, Y. G., 7 May 2019, In: Environmental Science and Technology. 53, 9, p. 4841-4849Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions
Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold & Hansen, Lars Hestbjerg, 1 May 2019, In: FEMS Microbiology Letters. 366, 9, p. 1-8 fnz101.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Detection of saxitoxin-producing cyanobacteria in subtropical Brazilian drinking water supply reservoir by quantitative PCR
De Almeida Bispo Moraes, M., Rodrigues, R. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., May 2019.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Draft Genome Sequences of Two Glycoalkaloid-Degrading Arthrobacter Strains Isolated from Green Potato Peel
Hennessy, Rosanna Catherine, Park, B., Pathiraja, D., Choi, I., Schultz-Johansen, M. & Stougaard, P., 18 Apr 2019, In: Microbiology Resource Announcements. 8, 16, p. 1-2 8:e00226-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mobile Incubator for Iron(III) Reduction in the Gut of the Soil-Feeding Earthworm Pheretima guillelmi and Interaction with Denitrification
Zhou, G. W., Yang, X. R., Sun, A. Q., Li, H., Lassen, Simon Bo, Zheng, B. X. & Zhu, Y. G., 16 Apr 2019, In: Environmental Science and Technology. 53, 8, p. 4215-4223Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The gut microbiota of soil organisms show species-specific responses to liming
Ding, J., Zhu, D., Li, H., Ding, K., Chen, Q. L., Lassen, Simon Bo, Ke, X., O'Connor, P. & Zhu, Y. G., 1 Apr 2019, In: Science of the Total Environment. 659, p. 715-723 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
Krüger, U. S., Dechesne, A., Bak, Frederik, Badawi, N., Nybroe, O. & Aamand, J., 15 Mar 2019, In: Applied and Environmental Microbiology. 85, 6, p. 1-16 e02658-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evidence for co-selection of antibiotic resistance genes and mobile genetic elements in metal polluted urban soils
Zhao, Y., Cocerva, T., Cox, S., Tardif, S., Su, J. Q., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Mar 2019, In: Science of the Total Environment. 656, p. 512-520Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of biochar and zero-valent iron for in-situ remediation of chromated copper arsenate contaminated soil
Frick, H., Tardif, S., Kandeler, E., Holm, Peter Engelund & Brandt, Kristian Koefoed, 10 Mar 2019, In: Science of the Total Environment. 655, p. 414-422 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile
Bak, Frederik, Nybroe, O., Zheng, B., Badawi, N., Hao, X., Nicolaisen, Mette Haubjerg & Aamand, J., 1 Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-12 fiz008.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Suppression of arbuscular mycorrhizal fungal activity in a diverse collection of non-cultivated soils
Cruz Paredes, C., Svenningsen, N. B., Nybroe, O., Kjøller, Rasmus, Frøslev, Tobias Guldberg & Jakobsen, Iver, Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-10 fiz020.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Factors governing the solid phase distribution of Cr, Cu and As in contaminated soil after 40 years of ageing
Tardif, S., Cipullo, S., Sø, H. U., Wragg, J., Holm, Peter Engelund, Coulon, F., Brandt, Kristian Koefoed & Cave, M., 20 Feb 2019, In: Science of the Total Environment. 652, p. 744-754Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Linking bioavailability and toxicity changes of complex chemicals mixture to support decision making for remediation endpoint of contaminated soils
Cipullo, S., Negrin, I., Claveau, L., Snapir, B., Tardif, S., Pulleyblank, C., Prpich, G., Campo, P. & Coulon, F., 10 Feb 2019, In: Science of the Total Environment. 650, Part 2, p. 2150-2163 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system
Lukassen, M. B., Podduturi, Raju, Rohaan, B., Jørgensen, Niels O. G. & Nielsen, J. L., 1 Feb 2019, In: Aquaculture. 500, p. 170-177 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AsChip: A High-Throughput qPCR Chip for Comprehensive Profiling of Genes Linked to Microbial Cycling of Arsenic
Zhao, Y., Su, J. Q., Ye, J., Rensing, C., Tardif, S., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Jan 2019, In: Environmental Science and Technology. 53, 2, p. 798-807 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of pH-Dependent Metal Speciation Artifacts in Whole-Cell Bioreporter Analysis
Hansen, M. G., Marcussen, H., Holm, Peter Engelund & Brandt, Kristian Koefoed, 1 Jan 2019, In: Journal of Environmental Quality. 48, 1, p. 199-204 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fertilising effect of sewage sludge ash inoculated with the phosphate-solubilising fungus Penicillium bilaiae under semi-field conditions
Raymond, Nelly Sophie, Jensen, Lars Stoumann, van der Bom, Frederik, Nicolaisen, Mette Haubjerg & Müller-Stöver, Dorette Sophie, 1 Jan 2019, In: Biology and Fertility of Soils. 55, 1, p. 43-51 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fusarium diseases: biology and management perspectives
Rojas Tayo, E. C., Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit & Collinge, David B., 2019, Integrated disease management of wheat and barley. Burleigh Dodds Science Publishing Limited, Vol. 19. 23 p. (Burleigh Dodds series in agricultural science).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Assessment of risks related to agricultural use of sewage sludge, pig and cattle slurry
Pedersen, K. E., Brandt, Kristian Koefoed, Hansen, M., Cedergreen, Nina & Magid, Jakob, 2019, Department of Plant and Environmental Sciences, University of Copenhagen. 143 p.Research output: Book/Report › Report › Research
- Published
Ballast water treatment and bacteria: Analysis of bacterial activity and diversity after treatment of simulated ballast water by electrochlorination and UV exposure
Petersen, N. B., Madsen, T., Glaring, M. A., Dobbs, F. C. & Jørgensen, Niels O. G., 2019, In: Science of the Total Environment. 648, p. 408-421 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2
Sher, S., Rehman, A., Hansen, Lars Hestbjerg & Nielsen, Tue Kjærgaard, 2019, In: Microbiology Resource Announcements. 8, 31, 2 p., e00531-19.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Defining the twig fungal communities of Fraxinus species and Fraxinus excelsior genotypes with differences in susceptibility to ash dieback
Kosawang, Chatchai, Sørensen, Helle, Kjær, Erik Dahl, Dilokpimol, A., McKinney, L. V., Collinge, David B. & Nielsen, Lene Rostgaard, 2019, In: Fungal Ecology. 42, 8 p., 100859.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development and Application of High-throughput qPCR based Chips to study Arsenic Biotransformation and Antibiotic Resistance Genes in Contaminated Environments
Zhao, Y., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Emerging Methods for Biological Control of Barley Diseases Including the Role of Endophytes
Høyer, A. K., Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit, Murphy, B. R. & Hodkinson, T. R., 2019, Endophytes for a Growing World. Hodkinson, T. R., Doohan, F. M., Saunders, M. J. & Murphy, B. R. (eds.). Cambridge University Press, p. 93-119 27 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Evaluating the microbial effects of stocking freshwater snails (Physa gyrina) in water reuse systems culturing rainbow trout (Oncorhynchus mykiss)
Davidson, J., Plautz, C. Z., Grimm, C., Jørgensen, Niels O. G., Podduturi, Raju, Raines, C., Snader, R., Summerfelt, S. & Good, C., 2019, In: Journal of Applied Aquaculture. 31, 2, p. 97-120Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of dimethyl sulfoxide (DMSO) as a co-solvent for toxicity testing of hydrophobic organic compounds
Modrzyński, J. J., Christensen, Jan H. & Brandt, Kristian Koefoed, 2019, In: Ecotoxicology. 28, p. 1136-1141Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum - A Novel Lineage of Lactobacillus Phages Comprising Five New Members
Kyrkou, I., Carstens, Alexander Byth, Ellegaard-Jensen, L., Kot, Witold, Zervas, A., Djurhuus, Amaru Miranda, Neve, H., Hansen, M. & Hansen, Lars Hestbjerg, 2019, In: Viruses. 11, 7, 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the endophytic fungal microbiome of tomato roots: The role of phytohormones in plant-endophyte interactions
Manzotti, A., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages
Alves, D. R., Nzakizwanayo, J., Dedi, C., Olympiou, C., Hanin, A., Kot, Witold, Hansen, Lars Hestbjerg, Lametsch, Rene, Gahan, C. G. M., Schellenberger, P., Ogilvie, L. A. & Jones, B. V., 2019, In: Frontiers in Microbiology. 10, p. 1-14 1783.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
How to disentangle microbially functional complexity: an insight from the network analysis of C, N, P and S cycling genes
Zheng, B., Zhao, Y., Bi, Q., Zhou, G., Wang, H., Hao, X. & Ding, K., 2019, In: Science Bulletin. 64, 16, p. 1129-1131Research output: Contribution to journal › Editorial › Research
- Published
Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments
Lukassen, M. B., Jonge, N. D., Bjerregaard, S. M., Podduturi, Raju, Jørgensen, Niels O. G., Petersen, Mikael Agerlin, David, G. S., da Silva, R. J. & Nielsen, J. L., 2019, In: Frontiers in Microbiology. 10, 12 p., 2447.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbiota in preferential flow paths: Composition and lifestyles of microbial communities in an understudied subsurface environment
Bak, Frederik, 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
New microorganisms for mobilization of organic phosphate from soil
Pittroff, S. M., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
On the hunt for the alternate host of Hemileia vastatrix
Koutouleas, Tina, Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit, Lillesø, Jens-Peter Barnekow, Junge, A. & Ræbild, Anders, 2019, In: Ecology and Evolution. 9, 23, p. 13619-13631 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant-endophyte interactions as a source of bioactive compounds: Regulation of specialised metabolism during tomato and Serendipita indica interaction
Ntana, F., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Responses to soil pH gradients of inorganic phosphate solubilizing bacteria community
Zheng, B. X., Zhang, D. P., Wang, Y., Hao, X., Wadaan, M. A. M., Hozzein, W. N., Peñuelas, J., Zhu, Y. G. & Yang, X. R., 2019, In: Scientific Reports. 9, p. 1-8 25.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Searching for novel fungal biological control agents for plant disease control among endophytes
Collinge, David B., Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Manzotti, A., Ntana, F., Rojas Tayo, E. C. & Jensen, Birgit, 2019, Endophytes for a growing world. Hodkinson, T., Doohan, F., Saunders, M. & Murphy, B. (eds.). Cambridge University Press, p. 25-51 17 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Sepsis-related Organ Failure Assessment Score is a strong predictor of survival in acute-on-chronic liver failure
Cold, F., Schiødt, Frank Vinholt, Pott, Frank Christian, Strandkjær, N. & Christensen, E., 2019, In: Danish Medical Journal. 66, 8, 5 p., A5557.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil bacteria and protists show different sensitivity to polycyclic aromatic hydrocarbons at controlled chemical activity
Winding, A., Modrzyński, J. J., Christensen, Jan H., Brandt, Kristian Koefoed & Mayer, P., 2019, In: FEMS Microbiology Letters. 366, 17, fnz214.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil – Microbiome – Contaminant Interactions: Pre and Post Remediation of Chromated Copper Arsenate Contaminated Soil
Tardif, S., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Testing the yield of a pilot-scale bubble column photobioreactor for cultivation of the microalga Rhodomonas salina as feed for intensive calanoid copepod cultures
Vu, M. T. T., Jepsen, P. M., Jørgensen, Niels O. G., Hansen, B. W. & Nielsen, S. L., 2019, In: Aquaculture Research. 50, 1, p. 63-71 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Use of endophytic fungi as biocontrol agents of cereal diseases
Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Latz, Meike, Rojas Tayo, E. C. & Jensen, Birgit, 2019, WMF meets IUPAC 2019: Abstracts of lectures and posters. The World Mycotoxin Forum, p. 31 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- 2018
- Published
Carbon mineralization and microbial activity in agricultural topsoil and subsoil as regulated by root nitrogen and recalcitrant carbon concentrations
Liang, Z., Elsgaard, L., Nicolaisen, Mette Haubjerg, Lyhne-Kjærbye, A. & Olesen, J. E., 1 Dec 2018, In: Plant and Soil. 433, 1-2, p. 65-82Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbially induced off-flavours in aquaculture production
Podduturi, Raju, Dec 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Endophytic fungi as biocontrol agents: elucidating mechanisms in disease suppression
Latz, Meike, Jensen, Birgit, Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2 Nov 2018, In: Plant Ecology and Diversity. 11, 5-6, p. 555-567Research output: Contribution to journal › Review › Research › peer-review
- Published
Feed additives shift gut microbiota and enrich antibiotic resistance in swine gut
Zhao, Y., Su, J., An, X., Huang, F., Rensing, C., Brandt, Kristian Koefoed & Zhu, Y., 15 Apr 2018, In: Science of the Total Environment. 621, p. 1224-1232 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Colwellia echini sp. nov., an agar- and carrageenan-solubilizing bacterium isolated from sea urchin
Christiansen, L., Bech, P. K., Schultz-Johansen, M., Martens, Helle Jakobe & Stougaard, P., 2018, In: International Journal of Systematic and Evolutionary Microbiology. 68, 2, p. 687-691 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A broad-host range dual-fluorescence reporter system for gene expression analysis in Gram-negative bacteria
Hennessy, Rosanna Catherine, Christiansen, L., Olsson, S. & Stougaard, P., 2018, In: Journal of Microbiological Methods. 144, p. 173-176 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A cerato-platanin protein SsCP1 targets plant PR1 and contributes to virulence of Sclerotinia sclerotiorum
Yang, G., Tang, L., Gong, Y., Xie, J., Fu, Y., Jiang, D., Li, G., Collinge, David B., Chen, W. & Cheng, J., 2018, In: New Phytologist. 217, 2, p. 739-755 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel enzyme portfolio for red algal polysaccharide degradation in the marine bacterium Paraglaciecola hydrolytica S66T encoded in a sizeable polysaccharide utilization locus
Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine, Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2018, In: Frontiers in Microbiology. 9, 15 p., 839.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A screening method for the isolation of bacteria capable of degrading toxic steroidal glycoalkaloids present in potato
Hennessy, Rosanna Catherine, Jørgensen, Niels O. G., Scavenius, C., Enghild, J. J., Greve-Poulsen, M., Sørensen, O. B. & Stougaard, P., 2018, In: Frontiers in Microbiology. 9, p. 1-7 7 p., 2648.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biological control of rice sheath blight using hyphae-associated bacteria: development of an in planta screening assay to predict biological control agent performance under field conditions
Nicolaisen, Mette Haubjerg, Nguyen Duc Cuong, Herschend, J., Jensen, Birgit, Le Cam Loan, Pham Van Du, Sørensen, Jan, Sørensen, Helle & Olsson, S., 2018, In: BioControl. 63, 6, p. 843-853Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Can phytohormones influence the composition of the endophytic microbiome in tomato roots?
Manzotti, A., Bergna, A., Cernava, T., Berg, G., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2018, p. 218. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production
Schluter, L., David, G. S., Jørgensen, Niels O. G., Podduturi, Raju, Tucci, A., Dias, A. S. & da Silva, R. J., 2018, In: Aquaculture Environment Interactions. 10, p. 35-48 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Community dispersal: Developing and applying a novel method to explore the dispersal potential of bacterial communities from environmental samples
Krüger, U. S., 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Conidia-based fluorescence quantification of Streptomyces
Podduturi, Raju & Jørgensen, Niels O. G., 2018, In: Journal of Microbiological Methods. 153, p. 104-107 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
Podduturi, Raju, Clausen, N., Petersen, N. B., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2018, Flavour Science: Proceedings of the XV Weurman Flavour Research Symposium. Siegmund, B. & Leitner, E. (eds.). Verlag der Technische Universität Graz, p. 475-478 4 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance
Larsson, D. G. J., Andremont, A., Bengtsson-Palme, J., Brandt, K. K., Husman, A. M. D. R., Fagerstedt, P., Fick, J., Flach, C-F., Gaze, W. H., Kuroda, M., Kvint, K., Laxminarayan, R., Manaia, C. M., Nielsen, K. M., Plant, L., Ploy, M-C., Segovia, C., Simonet, P., Smalla, K., Snape, J. & 6 others, , 2018, In: Environment International. 117, p. 132-138Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery and screening of novel metagenome-derived GH107 enzymes targeting sulfated fucans from brown algae
Schultz-Johansen, M., Cueff, M., Hardouin, K., Jam, M., Larocque, R., Glaring, M. A., Herve, C., Czjzek, M. & Stougaard, P., 2018, In: FEBS Journal. 285, 22, p. 4281-4295Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Distribution of arsenic resistance genes in prokaryotes
Ben Fekih, I., Zhang, C., Li, Y. P., Zhao, Y., Alwathnani, H. A., Saquib, Q., Rensing, C. & Cervantes, C., 2018, In: Frontiers in Microbiology. 9, p. 1-11 2473.Research output: Contribution to journal › Review › Research › peer-review
- Published
- Published
Draft Genome Sequence of a Novel Serratia sp. Strain with Antifungal Activity
Dichmann, S. I., Park, B., Pathiraja, D., Choi, I., Stougaard, P. & Hennessy, Rosanna Catherine, 2018, In: Microbiology resource announcements. 7, 22, p. 1-2 e01340-18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolution of the bacterial Cu resistome as revealed by comparative genomics
Qin, Y., 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
First report of Neonectria neomacrospora on Abies concolor in Finland
Uimari, A., Poteri, M., Vuorinen, M. & Nielsen, Knud Nor, 2018, In: New Disease Reports. 38, 1, p. 3 1 p.Research output: Contribution to journal › Comment/debate › Research
- Published
Fungal communities associated with species of Fraxinus tolerant to ash dieback, and their potential for biological control
Kosawang, Chatchai, Amby, Daniel Buchvaldt, Bussaban, B., McKinney, L. V., Xu, Jing, Kjær, Erik Dahl, Collinge, David B. & Nielsen, Lene Rostgaard, 2018, In: Fungal Biology. 122, 2-3, p. 110-120 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into mixed contaminants interactions and its implication for heavy metals and metalloids mobility, bioavailability and risk assessment
Cipullo, S., Snapir, B., Tardif, S., Campo, P., Prpich, G. & Coulon, F., 2018, In: Science of the Total Environment. 645, p. 662-673Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples
Jacobsen, C. S., Nielsen, T. K., Vester, J. K., Stougaard, P., Nielsen, J. L., Voriskova, J., Winding, A., Baldrian, P., Liu, B., Frostegard, A., Pedersen, D., Tveit, A. T., Svenning, M. M., Tebbe, C. C., Ovreas, L., Jakobsen, P. B., Blazewicz, S. J., Hubablek, V., Bertilsson, S., Hansen, L. H. & 4 others, , 2018, In: Scientific Reports. 8, p. 1-6 6 p., 5711.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term fertilisation form, level and duration affect the diversity, structure and functioning of soil microbial communities in the field
van der Bom, Frederik, Nunes, I., Raymond, Nelly Sophie, Hansen, Veronika, Bonnichsen, L., Magid, Jakob, Nybroe, O. & Jensen, Lars Stoumann, 2018, In: Soil Biology & Biochemistry. 122, p. 91-103 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel method reveals a narrow phylogenetic distribution of bacterial dispersers in environmental communities exposed to low-hydration conditions
Krüger, U. S., Bak, Frederik, Aamand, J., Nybroe, O., Badawi, N., Smets, B. F. & Dechesne, A., 2018, In: Applied and Environmental Microbiology. 84, 7, 16 p., e02857-17.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Part by Part: Synthetic Biology Parts Used in Solventogenic Clostridia
Gyulev, I. S., Willson, B. J., Hennessy, Rosanna Catherine, Krabben, P., Jenkinson, E. R. & Thomas, G. H., 2018, In: A C S Synthetic Biology. 7, 2, p. 311-327 17 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Seed coating with the fungal biocontrol agent Clonostachys rosea controls clubroot in oilseed rape
Andersen, C. B., Jørgensen, Hans Jørgen Lyngs, Manzotti, A. & Jensen, Birgit, 2018, In: IOBC-WPRS Bulletin. 136, p. 157-163 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota
Svenningsen, N. B., Watts-Williams, S. J., Joner, E. J., Battini, F., Efthymiou, A., Cruz Paredes, C., Nybroe, O. & Jakobsen, Iver, 2018, In: I S M E Journal. 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids
Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.Research output: Working paper › Preprint › Research
- Published
The biofilm matrix polysaccharides cellulose and alginate both protect Pseudomonas putida mt-2 against reactive oxygen species generated under matric stress and copper exposure
Svenningsen, N. B., Martinez-Garcia, E., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2018, In: Microbiology. 164, 6, p. 883-888 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The microbial cycling of phosphorus on long-term fertilized soil: insights from phosphate oxygen isotope ratios
Bi, Q., Zheng, B., Lin, X., Li, K., Liu, X., Hao, X., Zhang, H., Zhang, J., Jaisi, D. P. & Zhu, Y., 2018, In: Chemical Geology. 483, p. 56-64Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The roles of mycorrhiza and Penicillium inoculants in phosphorus uptake by biochar-amended wheat
Efthymiou, A., Jensen, Birgit & Jakobsen, Iver, 2018, In: Soil Biology & Biochemistry. 127, p. 168-177Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Tracking antibiotic resistome during wastewater treatment using high throughput quantitative PCR
An, X., Su, J., Li, B., Ouyang, W., Zhao, Y., Chen, Q., Cui, L., Chen, H., Gillings, M. R., Zhang, T. & Zhu, Y., 2018, In: Environment International. 117, p. 146-153Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transgenic crops and beyond: how can biotechnology contribute to the sustainable control of plant diseases?: Biotechnology for plant disease control: GMOs and beyond
Collinge, David B., 2018, In: European Journal of Plant Pathology. 152, 4, p. 977-986 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Imaging transcription during microbe-microbe interactions
Hennessy, Rosanna Catherine, Olsson, S. & Stougaard, P., 13 Nov 2017, p. 79-79.Research output: Contribution to conference › Poster › Research › peer-review
- Published
A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil
Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Azadirachta indica reduces black sigatoka in east african highland banana by direct antimicrobial effects against Mycosphaerella fijiensis without inducing resistance
Kumakech, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Edema, R. & Okori, P., 2017, In: Journal of Agricultural Science. 9, 4, p. 61-76 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid
Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil
Zheng, B. X., Bi, Q. F., Hao, X., Zhou, G. W. & Yang, X. R., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 8, p. 2514-2519 6 p., 001916.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Paraglaciecola hydrolytica sp nov., a bacterium with hydrolytic activity against multiple seaweed-derived polysaccharides
Bech, P. K., Schultz-Johansen, M., Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 7, p. 2242-2247 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pararhizobium antarcticum sp nov., isolated from Antarctic water samples
Naqvi, S. U., Qin, Y., Tahir, A. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, p. 1650-1655 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
A microplate reader-based system for visualizing transcriptional activity during in vivo microbial interactions in space and time
Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 2017, In: Scientific Reports. 7, 6 p., 281.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Adhesion to sand and ability to mineralise low pesticide concentrations are required for efficient bioaugmentation of flow-through sand filters
Samuelsen, E. D., Badawi, N., Nybroe, O., Sørensen, S. R. & Aamand, J., 2017, In: Applied Microbiology and Biotechnology. 101, 1, p. 411-421 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An underappreciated hotspot of antibiotic resistance: the groundwater near the municipal solid waste landfill
Chen, Q., Li, H., Zhou, X., Zhao, Y., Su, J., Zhang, X. & Huang, F., 2017, In: Science of the Total Environment. 609, p. 966-973 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Arctic Biotechnology – Sustainable Products and Processes from Arctic Biological Resources
Thøgersen, M. S., Hennessy, Rosanna Catherine & Stougaard, P., 2017.Research output: Contribution to conference › Poster › Research
- Published
Biocide runoff from building facades: degradation kinetics in soil
Bollmann, U. E., Fernandez Calviño, D., Brandt, Kristian Koefoed, Storgaard, M. S., Sanderson, H. & Bester, K., 2017, In: Environmental Science & Technology (Washington). 51, 7, p. 3694-3702 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biosynthesis of the antimicrobial cyclic lipopeptides nunamycin and nunapeptin by Pseudomonas fluorescens strain In5 is regulated by the LuxR-type transcriptional regulator NunF
Hennessy, Rosanna Catherine, Phippen, C. B. W., Nielsen, K. F., Olsson, S. & Stougaard, P., 2017, In: MicrobiologyOpen. 6, 6, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changes in free amino acid content during naupliar development of the Calanoid copepod Acartia tonsa
Rayner, T. A., Jørgensen, Niels O. G., Drillet, G. & Hansen, B. W., 2017, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 210, p. 1-6 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparison of metals and tetracycline as selective agents for development of tetracycline resistant bacterial communities in agricultural soil
Song, J., Rensing, C., Holm, Peter Engelund, Virta, M. & Brandt, Kristian Koefoed, 2017, In: Environmental Science & Technology (Washington). 51, 5, p. 3040-3047 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Constructing and screening a metagenomic library of a cold and alkaline extreme environment
Glaring, M. A., Vester, J. K. & Stougaard, P., 2017, Metagenomics. Streit, W. R. & Daniel, R. (eds.). Springer, p. 43-55 13 p. (Methods in Molecular Biology, Vol. 1539).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Discovery of novel algae-degrading enzymes from marine bacteria
Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine & Stougaard, P., 2017.Research output: Contribution to conference › Poster › Research
- Published
Ecotoxicological assessment of propiconazole using soil bacterial and fungal growth assays
Fernandez Calviño, D., Rousk, J., Baath, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2017, In: Agriculture, Ecosystems & Environment. 115, p. 27-30Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of Metals on Antibiotic Resistance and Conjugal Plasmid Transfer in Soil Bacterial Communities
Song, J., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 119 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Effects of two different high-fidelity DNA polymerases on genetic analysis of the cyanobacterial community structure in a subtropical deep freshwater reservoir
Zhen, Z., Liu, J., Rensing, C. G. T., Yan, C. & Zhang, Y., 2017, In: Archives of Microbiology. 199, 1, p. 125-134 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Fight fungi with fungi: endophytes as biocontrol agents on wheat
Rojas Tayo, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Henriksson, T., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 99 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
Fungal endophytes – the hidden inducers of volatile terpene biosynthesis in tomato plants
Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Cernava, T., Berg, G. & Hamberger, B., 2017.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Harnessing endophytes for biological control of Septoria tritici blotch
Latz, Meike, Collinge, David B., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 103 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
How do phytohormones influence the composition of fungal endophyte communities in tomato roots?
Manzotti, A., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 124 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
Interaction of the psychrotroph Pseudomonas fluorescens In5 with phytopathogens in cold soils
Hennessy, Rosanna Catherine, Olsson, S. & Stougaard, P., 2017, p. 17-17.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil
Zheng, B., Hao, X., Ding, K., Zhou, G., Chen, Q., Zhang, J. & Zhu, Y., 2017, In: Scientific Reports. 7, 10 p., 42284.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Klümper, U., Dechesne, A., Riber, Leise, Brandt, Kristian Koefoed, Gülay, A., Sørensen, Søren Johannes & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Penicillium bilaii effects on maize growth and P uptake from soil and localized sewage sludge in a rhizobox experiment
Gomez Muñoz, B., Pittroff, S. M., de Neergaard, Andreas, Jensen, Lars Stoumann, Nicolaisen, Mette Haubjerg & Magid, Jakob, 2017, In: Biology and Fertility of Soils. 53, 1, p. 23-35 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phytohormones in plant-endophyte interactions: investigating the role of these compounds in the recruitment of tomato root fungal endophytes
Manzotti, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Jensen, Birgit, 2017.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Potential contribution of fish feed and phytoplankton to the content of volatile terpenes in cultured Pangasius (Pangasianodon hypophthalmus) and Tilapia (Oreochromis niloticus)
Podduturi, Raju, Petersen, Mikael Agerlin, Mahmud, S., Rahman, M. M. & Jørgensen, Niels O. G., 2017, In: Journal of Agricultural and Food Chemistry. 65, 18, p. 3730-3736 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Survival of chicken ascarid eggs exposed to different soil types and fungi
Thapa, S., Mejer, Helena, Thamsborg, Stig Milan, Lekfeldt, J. D. S., Wang, R., Jensen, Birgit, Magid, Jakob & Meyling, Nicolai Vitt, 2017, In: Agriculture, Ecosystems & Environment. 121, p. 143-151 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The root external mycelium of mycorrhizal fungi has a key role in plant nutrition but is suppressed by the soil microbiota
Cruz Paredes, C., Watts-Williams, S. J., Battini, F., Joner, E. J., Svenningsen, N. B., Dela Cruz, Majbrit, Christensen, Jan H., Nybroe, O. & Jakobsen, Iver, 2017, Proceedings Book: XVIII International Plant Nutrition Colloquium with Boron and Manganese Satellite Meetings. Carstensen, A., Laursen, K. H. & Schjoerring, J. K. (eds.). University of Copenhagen, p. 116-117 2 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Transcriptome analysis sheds light on the Serendipita indica-tomato interaction
Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Hamberger, B., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 119 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
Transcriptomic profiling of microbe-microbe interactions reveals the specific response of the biocontrol strain P. fluorescens In5 to the phytopathogen Rhizoctonia solani
Hennessy, Rosanna Catherine, Glaring, M. A., Olsson, S. & Stougaard, P., 2017, In: BMC Research Notes. 10, 15 p., 376.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Foreword
Collinge, David B., 8 Apr 2016, Plant Pathogen Resistance Biotechnology. Wiley-Blackwell, p. xix-xxiiiResearch output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research › peer-review
- Published
Clonostachys rosea reduces spot blotch in barley by inhibiting pre-penetration growth and sporulation of Bipolaris sorokiniana without inducing resistance
Jensen, Birgit, Lübeck, P. S. & Jørgensen, Hans Jørgen Lyngs, 2016, In: Pest Management Science. 72, 12, p. 2231-2239 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
In situ dynamics of O2, pH, light and photosynthesis in ikaite tufa columns (Ikka Fjord, Greenland) - a unique microbial habitat
Trampe, Erik, Larsen, Jens Erik Nybo, Glaring, M. A., Stougaard, P. & Kühl, Michael, 2016, In: Frontiers in Microbiology. 7, 13 p., 722.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Back to the future of soil metagenomics
Nesme, J., Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., Murrell, J. C., Myrold, D. D., Nalin, R. & 28 others, , 2016, In: Frontiers in Microbiology. 7, 5 p., 73.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Contribution of the seed microbiome to weed management
Müller-Stöver, Dorette Sophie, Nybroe, O., Baraibar, B., Loddo, D., Eizenberg, H., French, K., Sønderskov, M., Neve, Paul, Peltzer, D. A., Maczey, N. & Christensen, Svend, 2016, In: Weed Research. 56, 5, p. 335-339 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure
Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cu retention in an acid soil amended with perlite winery waste
Rodríguez-Salgado, I., Pérez-Rodríguez, P., Gómez-Armesto, A., Nóvoa-Muñoz, J. C., Arias-Estévez, M. & Fernandez Calviño, D., 2016, In: Environmental science and pollution research international. 23, 4, p. 3789-3798 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dissipation of pterosin B in acid soils - tracking the fate of the bracken fern carcinogen ptaquiloside
Skourti-Stathaki, E., Clauson-Kaas, F., Brandt, Kristian Koefoed, Rasmussen, L. H. & Hansen, Hans Chr. Bruun, 2016, In: Chemosphere. 165, p. 453-459 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequence of a novel marine bacterium, Paraglaciecola sp. strain S66, with hydrolytic activity against seaweed polysaccharides
Schultz-Johansen, M., Glaring, M. A., Bech, P. K. & Stougaard, P., 2016, In: Genome Announcements. 4, 2, e00304-16.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dual effects of Metarhizium spp. and Clonostachys rosea against an insect and a seed-borne pathogen in wheat
Keyser, C. A., Jensen, Birgit & Meyling, Nicolai Vitt, 2016, In: Pest Management Science. 72, 3, p. 517-526 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of probiotic and sand filtration treatments on water quality and growth of tilapia (Oreochromis niloticus) and pangas (Pangasianodon hypophthalmus) in earthen ponds of southern Bangladesh
Mahmud, S., Ali, M. L., Alam, M. A., Rahman, M. M. & Jørgensen, Niels O. G., 2016, In: Journal of Applied Aquaculture. 28, 3, p. 199-212 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Endophytic colonisation of tomato plants by the biological control agent Clonostachys rosea
Høyer, A. K., Jørgensen, Hans Jørgen Lyngs, Amby, Daniel Buchvaldt & Jensen, Birgit, 2016, Biological and integrated control of plant pathogens. International Organisation for Biological and Integrated Control (IOBC), p. 101-106 6 p. (IOBC-WPRS Bulletin, Vol. 115).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Fungal innate immunity induced by bacterial microbe-associated molecular patterns (MAMPs)
Ip Cho, S., Sundelin, T., Erbs, G., Kistler, H. C., Newman, Mari-Anne & Olsson, S., 2016, In: G3: Genes, Genomes, Genetics (Bethesda). 6, 6, p. 1585-1595 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of selenium-solubilizing bacterium Caulobacter vibrioides T5M6
Wang, Y., Qin, Y., Kot, W., Zhang, F., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C. G. T., 2016, In: Genome Announcements. 4, 1, 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases
Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Sanggaard, K. W., Vester, J. K., Enghild, J. J., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2016, In: Microbial Biotechnology. 9, 2, p. 245-256 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global, regional, and national comparative risk assessment of 79 behavioural, environmental and occupational, and metabolic risks or clusters of risks, 1990-2015: a systematic analysis for the Global Burden of Disease Study 2015
Forouzanfar, M. H., Afshin, A., Alexander, L. T., Anderson, H. R., Bhutta, Z. A., Biryukov, S., Brauer, M., Burnett, R., Cercy, K., Charlson, F. J., Cohen, A. J., Dandona, L., Estep, K., Ferrari, A. J., Frostad, J. J., Fullman, N., Gething, P. W., Godwin, W. W., Griswold, M., Kinfu, Y. & 31 others, , 2016, In: The Lancet. 388, 10053, p. 1659-1724 46 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Guidelines for the use and interpretation of assays for monitoring autophagy: 3rd edition
Klionsky, D. J., Abdelmohsen, K., Abe, A., Abedin, M. J., Abeliovich, H., Acevedo Arozena, A., Adachi, H., Adams, C. M., Adams, P. D., Adeli, K., Adhihetty, P. J., Adler, S. G., Agam, G., Agarwal, R., Aghi, M. K., Agnello, M., Agostinis, P., Aguilar, P. V., Aguirre-Ghiso, J., Airoldi, E. M. & 2,447 others, , 2016, In: Autophagy. 12, 1, p. 1-222 222 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Influence of two-phase anaerobic digestion on fate of selected antibiotic resistance genes and class I integrons in municipal wastewater sludge
Wu, Y., Cui, E., Zuo, Y., Cheng, W., Rensing, C. G. T. & Chen, H., 2016, In: Bioresource Technology. 211, p. 414-421 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interaction between pH and Cu toxicity on fungal and bacterial performance in soil
Fernandez Calviño, D. & Baath, E., 2016, In: Soil Biology & Biochemistry. 96, p. 20-29 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Limited recovery of soil microbial activity after transient exposure to gasoline vapors
Modrzynski, J. J., Christensen, Jan H., Mayer, P. & Brandt, Kristian Koefoed, 2016, In: Environmental Pollution. 216, p. 826-835 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial virulence and interactions with metals
German, N., Lüthje, F. L., Hao, X., Rønn, Regin & Rensing, C. G. T., 2016, Host-microbe interactions. Pruitt, K. (ed.). Elsevier, p. 27-49 23 p. (Progress in Molecular Biology and Translational Science, Vol. 142).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Nitrogen regulation of the xyl genes of Pseudomonas putida mt-2 propagates into a significant effect of nitrate on m-xylene mineralization in soil
Svenningsen, N. B., Nicolaisen, Mette Haubjerg, Hansen, Hans Chr. Bruun, de Lorenzo, V. & Nybroe, O., 2016, In: Microbial Biotechnology. 9, 6, p. 814-823 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel Enzymes for Targeted Hydrolysis of Algal Cell Walls
Schultz-Johansen, M., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Plankton composition and biomass development: a seasonal study of a semi-intensive outdoor system for rearing of turbot
Jakobsen, H. H., Jepsen, P. M., Blanda, E., Jørgensen, Niels O. G., Novac, A., Engell-Sørensen, K. & Hansen, B. W., 2016, In: Aquaculture Nutrition. 22, 6, p. 1239-1250 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant pathogen resistance biotechnology
Collinge, David B. (ed.), 2016, Wiley-Blackwell. 405 p.Research output: Book/Report › Book › Research › peer-review
- Published
Predation and selection for antibiotic resistance in natural environments
Leisner, Jørgen, Jørgensen, Niels O. G. & Middelboe, Mathias, 2016, In: Evolutionary Applications (Online). 9, 3, p. 427-434 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relations between abundance of potential geosmin- and 2-MIB-producing organisms and concentrations of these compounds in water from three Australian reservoirs
Jørgensen, Niels O. G., Podduturi, Raju & Burford, M. A., 2016, In: Journal of Water Supply: Research and Technology. AQUA. 65, 6, p. 504-513 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Resistance and Resilience of Soil Microbial Communities Exposed to Petroleum-Derived Compounds
Modrzynski, J. J., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 84 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Restoration of growth by manganese in a mutant strain of Escherichia coli lacking most known iron and manganese uptake systems
Taudte, N., German, N., Zhu, Y., Grass, G. & Rensing, C. G. T., 2016, In: BioMetals. 29, 3, p. 433-450 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Role of the Colletotrichum acutatum sesquiterpene synthase CaTPS in the biosynthesis of sesquiterpenoids
Amby, Daniel Buchvaldt, Manczak, T., Petersen, Mikael Agerlin, Sundelin, T., Weitzel, C., Grajewski, M., Simonsen, H. T. & Jensen, Birgit, 2016, In: Microbiology. 162, 10, p. 1773-1783Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The copper metallome in prokaryotic cells
Rensing, C. G. T., Alwathnani, H. A. & McDevitt, S. F., 2016, Stress and environmental regulation of gene expression and adaptation in bacteria. de Bruijn, F. J. (ed.). Wiley, p. 161-173 13 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The soil microbiota harbors a diversity of carbapenem-hydrolyzing β-lactamases of potential clinical relevance
Gudeta, D. D., Bortolaia, V., Amos, G., Wellington, E. M. H., Brandt, Kristian Koefoed, Poirel, L., Nielsen, J. B., Westh, Henrik T. & Guardabassi, Luca, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 1, p. 151-160 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The status and prospects for biotechnological approaches for attaining sustainable disease resistance
Collinge, David B., Mullins, E., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2016, Plant pathogen resistance biotechnology. Collinge, D. B. (ed.). Wiley-Blackwell, p. 1-20 20 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The willow microbiome is influenced by soil petroleum-hydrocarbon concentration with plant compartment-specific effects
Tardif, S., Yergeau, E., Tremblay, J., Legendre, P., Whyte, L. G. & Greer, C. W., 2016, In: Frontiers in Microbiology. 7, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark
Qin, Y., Wang, D., Brandt, Kristian Koefoed & Rensing, C., 2016, In: Standards in Genomic Sciences. 11, 9 p., 86.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response
Svenningsen, N. B., Pérez-Pantoja, D., Nikel, P. I., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2015, In: BMC Microbiology. 15, 11 p., 202.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pseudomonas Lipopeptide Biosurfactants: Roles in Pollutant Biodegradation and Biofilm Formation
Bonnichsen, L., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 105 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
A revision of the history of the Colletotrichum acutatum species complex in the Nordic countries based on herbarium specimens.
Sundelin, T., Strømeng, G. M., Gjærum, H. B., Amby, Daniel Buchvaldt, Ørstad, K., Jensen, Birgit, Lund, O. S. & Stensvand, A., 2015, In: F E M S Microbiology Letters. 362, 7 p., fnv130.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity-guided separation of Chromolaena odorata leaf extract reveals fractions with rice disease-reducing properties
Rodriguez Algaba, J., Sørensen, J. C., Sørensen, H., Nguyen, D. K., Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2015, In: European Journal of Plant Pathology. 143, 2, p. 331-341 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An exceptionally cold-adapted alpha-amylase from a metagenomic library of a cold and alkaline environment
Vester, J. K., Glaring, M. A. & Stougaard, P., 2015, In: Applied Microbiology and Biotechnology. 99, 2, p. 717-727 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bioactivities by a crude extract from the Greenlandic Pseudomonas sp. In5 involves the nonribosomal peptides, nunamycin and nunapeptin
Michelsen, C. F., Jensen, H., Venditto, V. J., Hennessy, Rosanna Catherine & Stougaard, P., 2015, In: PeerJ. 3, 16 p., e1476.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biochemical composition of the promising live feed tropical calanoid copepod Pseudodiaptomus annandalei (Sewell 1919) cultured in Taiwanese outdoor aquaculture ponds
Rayner, T. A., Jørgensen, Niels O. G., Blanda, E., Wu, C., Huang, C., Mortensen, J., Hwang, J. & Hansen, B. W., 2015, In: Aquaculture. 441, p. 25-34 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cloning, purification and characterization of a thermostable beta-galactosidase from Bacillus licheniformis strain KG9
Bekler, F. M., Stougaard, P., Guven, K., Guven, R. G. & Acer, O., 2015, In: Cellular and Molecular Biology. 61, 3, p. 71-78 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Competitive adsorption/desorption of tetracycline, oxytetracycline and chlortetracycline on two acid soils: stirred flow chamber experiments
Fernandez Calviño, D., Bermudez-Couso, A., Arias-Estevez, M., Carlos Novoa-Munoz, J., Fernandez-Sanjurjo, M. J., Alvarez-Rodriguez, E. & Nunez-Delgado, A., 2015, In: Chemosphere. 134, p. 361-366 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Copper content and distribution in vineyard soils from Betanzos (A Coruña, Spain)
Gómez-Armesto, A., Carballeira-Díaz, J., Pérez-Rodríguez, P., Fernandez Calviño, D., Arias-Estévez, M., Nóvoa-Muñoz, J. C., Álvarez-Rodríguez, E., Fernández-Sanjurjo, M. J. & Núñez-Delgado, A., 2015, In: Spanish Journal of Soil Science. 5, 1, p. 60-71 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Copper tolerance mechanisms of Mesorhizobium amorphae and its role in aiding phytostabilization by Robinia pseudoacacia in copper contaminated soil
Hao, X., Xie, P., Zhu, Y., Taghavi, S., Wei, G. & Rensing, C. G. T., 2015, In: Environmental Science & Technology (Washington). 49, 4, p. 2328-2340 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Digested wheat gluten inhibits binding between leptin and its receptor
Jonsson, T., Memon, A. A., Sundquist, K., Sundquist, J., Olsson, S., Nalla, A., Bauer, M. & Linse, S., 2015, In: B M C Biochemistry. 16, 5 p., 3.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft Genome Sequence of Se(IV)-Reducing Bacterium Pseudomonas migulae ES3-33
Li, Xuan Ji, Kot, W., Wang, D., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C., 2015, In: Genome Announcements. 3, 3, p. 1-2 2 p., e00406-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequence of Pseudomonas sp. strain in5 isolated from a Greenlandic disease suppressive soil with potent antimicrobial activity
Hennessy, Rosanna Catherine, Glaring, M. A., Michelsen, C. F., Olsson, S. & Stougaard, P., 2015, In: Genome Announcements. 3, 6, 1 p., e01251-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments
Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Hallin, P. F., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2015, In: Genome Announcements. 3, 3, 2 p., e00585-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ecotoxicological assessment of antibiotics: a call for improved consideration of microorganisms
Brandt, Kristian Koefoed, Amézquita, A., Backhaus, T., Boxall, A., Coors, A., Heberer, T., Lawrence, J. R., Lazorchak, J., Schönfeld, J., Snape, J. R., Zhu, Y. & Topp, E., 2015, In: Environment International. 85, p. 189-205 17 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Effect of crushed mussel shell addition on bacterial growth in acid polluted soils
Fernandez Calviño, D., Garrido-Rodríguez, B., Arias-Estévez, M., Díaz-Raviña, M., Álvarez-Rodríguez, E., Fernández-Sanjurjo, M. J. & Nuñez-Delgado, A., 2015, In: Applied Soil Ecology. 85, p. 65-68 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expression profiling and functional analyses of BghPTR2, a peptide transporter from Blumeria graminis f. sp hordei
Droce, A., Holm, K. B., Olsson, S., Frandsen, R. J. N., Sondergaard, T. E., Sørensen, J. L. & Giese, H., 2015, In: Fungal Biology. 119, 7, p. 551-559 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fate of arsenate following arsenite oxidation in Agrobacterium tumefaciens GW4
Wang, Q., Qin, D., Zhang, S., Wang, L., Li, J., Rensing, C. G. T., McDermott, T. R. & Wang, G., 2015, In: Environmental Microbiology. 17, 6, p. 1926-1940 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark
Zhang, S., Wang, D., Wang, Y., Hasman, H., Aarestrup, F. M., Alwathnani, H. A., Zhu, Y. & Rensing, C. G. T., 2015, In: Standards in Genomic Sciences. 10, 10 p., 35.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global regulator IscR positively contributes to antimonite resistance and oxidation in Comamonas testosteroni S44
Liu, H., Zhuang, W., Zhang, S., Rensing, C. G. T., Huang, J., Li, J. & Wang, G., 2015, In: Frontiers in Bioscience. 2, 12 p., 70.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hyphae colonizing bacteria associated with Penicillium bilaii
Ghodsalavi, B., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Improved cultivation and metagenomics as new tools for bioprospecting in cold environments
Vester, J. K., Glaring, M. A. & Stougaard, P., 2015, In: Extremophiles. 19, 1, p. 17-29 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of Environmental Stressors on the Physiology of Pollutant Degrading Bacteria: From the Test Tube to the Environment
Svenningsen, N. B., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 133 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Insights on the evolution of mycoparasitism from the genome of Clonostachys rosea
Karlsson, M., Durling, M. B., Choi, J., Kosawang, C., Lackner, G., Tzelepis, G. D., Nygren, K., Dubey, M. K., Kamou, N., Levasseur, A., Zapparata, A., Wang, J., Amby, D. B., Jensen, B., Sarrocco, S., Panteris, E., Lagopodi, A. L., Pöggeler, S., Vannacci, G., Collinge, D. B. & 4 others, , 2015, In: Genome Biology and Evolution. 7, 2, p. 465-480 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kinetics of tetracycline, oxytetracycline, and chlortetracycline adsorption and desorption on two acid soils
Fernandez Calviño, D., Bermúdez-Couso, A., Arias-Estévez, M., Nóvoa-Muñoz, J. C., Fernández-Sanjurjo, M. J., Álvarez-Rodríguez, E. & Núñez-Delgado, A., 2015, In: Environmental Science and Pollution Research. 22, 1, p. 425-433 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large-scale phenomics identifies primary and fine-tuning roles for CRKs in responses related to oxidative stress
Bourdais, G., Burdiak, P., Gauthier, A., Nitsch, L., Salojärvi, J., Rayapuram, C., Idänheimo, N., Hunter, K., Kimura, S., Merilo, E., Vaattovaara, A., Oracz, K., Kaufholdt, D., Pallon, A., Anggoro, D. T., Glów, D., Lowe, J., Zhou, J., Mohammadi, O., Puukko, T. & 13 others, , 2015, In: P L o S Genetics. 11, 7, 36 p., e1005373.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Lipopeptide biosurfactant viscosin enhances dispersal of Pseudomonas fluorescens SBW25 biofilms
Bonnichsen, L., Svenningsen, N. B., Rybtke, Morten Levin, de Bruijn, I., Raaijmakers, J. M., Tolker-Nielsen, Tim & Nybroe, O., 2015, In: Microbiology. 161, 12, p. 2289-2297 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metalaxyl mobility in acid soils: evaluation using different methods
Fernandez Calviño, D., Bermudez-Couso, A., Novoa-Munoz, J. C. & Arias-Estevez, M., 2015, In: International Journal of Environmental Science and Technology. 12, 7, p. 2179-2190 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methane fluxes and the functional groups of methanotrophs and methanogens in a young Arctic landscape on Disko Island, West Greenland
Christiansen, Jesper Riis, Barrera Romero, A. J., Jørgensen, Niels O. G., Glaring, M. A., Jørgensen, C. J., Berg, L. K. & Elberling, Bo, 2015, In: Biogeochemistry. 122, 1, p. 15-33 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Microbial biosynthesis of secondary metabolites involved in biocontrol
Hennessy, Rosanna Catherine, Michelsen, C. F., Olsson, S. & Stougaard, P., 2015.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Microbial diversity in a permanently cold and alkaline environment in Greenland
Glaring, M. A., Vester, J. K., Lylloff, J. E., Abu Al-Soud, W., Sørensen, Søren Johannes & Stougaard, P., 2015, In: PLoS ONE. 10, 4, 22 p., e0124863.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Modeling losses of copper-based fungicide foliar sprays in wash-off under simulated rain
Pérez-Rodríguez, P., Paradelo, M., Soto-Gómez, D., Fernandez Calviño, D. & López-Periago, J. E., 2015, In: International Journal of Environmental Science and Technology. 12, 2, p. 661-672 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonribosomal peptides, key biocontrol components for Pseudomonas fluorescens In5, isolated from a Greenlandic suppressive soil
Michelsen, C. F., Watrous, J., Glaring, M. A., Kersten, R., Koyama, N., Dorrestein, P. C. & Stougaard, P., 2015, In: mBio (Print). 6, 2, 9 p., e00079-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Novel Pseudomonas – derived antifungal lipopeptides from a disease suppressive soil in Greenlandic potato fields
Hennessy, Rosanna Catherine, Michelsen, C. F., Glaring, M. A., Phippen, C., Nielsen, K. F., Olsson, S. & Stougaard, P., 2015.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
Nunamycin and Nunapeptin: Two novel cyclic peptides are key components of the antimicrobial activity of the Greenlandic isolate Pseudomonas fluorescens In5
Hennessy, Rosanna Catherine, Phippen, C., Nielsen, K. F., Michelsen, C. F., Olsson, S. & Stougaard, P., 2015.Research output: Contribution to conference › Poster › Research › peer-review
- Published
Perspectives on the use of by-products to treat soil and water pollution
Nunez-Delgado, A., Alvarez-Rodriguez, E., Fernandez-Sanjurjo, M. J., Carlos Novoa-Munoz, J., Arias-Estevez, M. & Fernandez Calviño, D., 2015, In: Microporous and Mesoporous Materials. 210, p. 199-201 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteomics and genetics for identification of a bacterial antimonite oxidase in Agrobacterium tumefaciens
Li, J., Wang, Q., Li, M., Yang, B., Shi, M., Guo, W., McDermott, T. R., Rensing, C. G. T. & Wang, G., 2015, In: Environmental Science & Technology (Washington). 49, 10, p. 5980-5989 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spring freeze effect on wheat yield is modulated by winter temperature fluctuations: evidence from meta-analysis and simulating experiment
Li, Xuan Ji, Cai, J., Liu, Fulai, Dai, T., Cao, W. & Jiang, D., 2015, In: Journal of Agronomy and Crop Science. 201, 4, p. 288-300 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Survival in amoeba - a major selection pressure on the presence of bacterial copper and zinc resistance determinants? Identification of a "copper pathogenicity island"
Hao, X., Lüthje, F. L., Qin, Y., McDevitt, S. F., Lutay, N., Hobman, J. L., Asiani, K., Soncini, F. C., German, N., Zhang, S., Zhu, Y. & Rensing, C., 2015, In: Applied Microbiology and Biotechnology. 99, 14, p. 5817-5824 8 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
The biosurfactant viscosin transiently stimulates n-hexadecane mineralization by a bacterial consortium
Bak, Frederik, Bonnichsen, L., Jørgensen, Niels O. G., Nicolaisen, Mette Haubjerg & Nybroe, O., 2015, In: Applied Microbiology and Biotechnology. 99, 3, p. 1475-1483 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of cysteine residues in redox regulation and protein stability of Arabidopsis thaliana starch synthase 1
Skryhan, K., Cuesta-Seijo, J. A., Nielsen, M. M., Marri, L., Mellor, Silas Busck, Glaring, M. A., Jensen, Poul Erik, Palcic, M. M. & Blennow, Andreas, 2015, In: PLOS ONE. 10, 9, p. e0136997Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Time evolution of the general characteristics and Cu retention capacity in an acid soil amended with a bentonite winery waste
Fernandez Calviño, D., Rodríguez-Salgado, I., Pérez-Rodríguez, P., Nóvoa-Muñoz, J. C. & Arias-Estévez, M., 2015, In: Journal of Environmental Management. 150, p. 435-443 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two novel cyclic peptides are key components of the antimicrobial activity of the Greenlandic isolate Pseudomonas sp. In5
Hennessy, Rosanna Catherine, Phippen, C., Nielsen, K. F., Michelsen, C. F., Olsson, S. & Stougaard, P., 2015.Research output: Contribution to conference › Conference abstract for conference › Research › peer-review
- Published
UHLPC- QTOF and MALDI-TOF analysis of novel antifungal natural products
Phippen, C., Nielsen, K. F., Hennessy, Rosanna Catherine, Michelsen, C. F. & Stougaard, P., 2015.Research output: Contribution to conference › Poster › Research › peer-review
- 2014
- Published
Endophytic colonization of tomato plants by the biological control agent Clonostachys rosea
Høyer, A. K., Jørgensen, Hans Jørgen Lyngs, Amby, Daniel Buchvaldt & Jensen, Birgit, 15 Jun 2014. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
BacMet: antibacterial biocide and metal resistance genes database
Pal, C., Bengtsson-Palme, J., Rensing, C. G. T., Kristiansson, E. & Larsson, D. G. J., 2014, In: Nucleic Acids Research. 42, D1, p. D737-D743 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial diversity in Greenlandic soils as affected by potato cropping and inorganic versus organic fertilization
Michelsen, C. F., Pedas, P. R., Glaring, M. A., Schjoerring, Jan K. & Stougaard, P., 2014, In: Polar Biology. 37, 1, p. 61-71 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biocidal mechanisms of metallic copper surfaces
Santo, C. E., German, N., Elguindi, J., Grass, G. & Rensing, C. G. T., 2014, Use of biocidal surfaces for reduction of healthcare acquired infections. Borkow, G. (ed.). Springer, p. 103-136 34 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Compaction stimulates denitrification in an urban park soil using 15N tracing technique
Li, S., Deng, H., Rensing, C. G. T. & Zhu, Y. G., 2014, In: Environmental Science and Pollution Research. 21, 5, p. 3783-3791 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cyanobacteria-mediated arsenic redox dynamics is regulated by phosphorus in aquatic environments
Zhang, S., Rensing, C. G. T. & Zhu, Y., 2014, In: Environmental Science & Technology (Washington). 48, 2, p. 994-1000 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery of novel enzymes with industrial potential from a cold and alkaline environment by a combination of functional metagenomics and culturing
Vester, J. K., Glaring, M. A. & Stougaard, P., 2014, In: Microbial Cell Factories. 13, 14 p., 72.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dissecting the role of viruses in marine nutrient cycling: bacterial uptake of D- and L-amino acids released by viral lysis
Shelford, E. J., Jørgensen, Niels O. G., Rasmussen, S., Suttle, C. A. & Middelboe, Mathias, 2014, In: Aquatic Microbial Ecology. 73, 3, p. 235-243 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of the leucine incorporation technique for detection of pollution-induced community tolerance to copper in a long-term agricultural field trial with urban waste fertilizers
Lekfeldt, J. D. S., Magid, Jakob, Holm, Peter Engelund, Nybroe, O. & Brandt, Kristian Koefoed, 2014, In: Environmental Pollution. 194, p. 78-85 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research
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2508
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
Research output: Contribution to journal › Journal article › Research › peer-review
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Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
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