- 2024
- Published
A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea
Latz, Meike, Andersson, A., Brugel, S., Hedblom, M., Jurdzinski, K. T., Karlson, B., Lindh, M., Lycken, J., Torstensson, A. & Andersson, A. F., 2024, In: Scientific Data. 11, 9 p., 18.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Challenges and opportunities for increasing the use of low-risk plant protection products in sustainable production. A review
Lankinen, Å., Witzell, J., Aleklett, K., Furenhed, S., Green, K. K., Latz, Meike, Liljeroth, E., Larsson, R., Löfkvist, K., Meijer, J., Menkis, A., Ninkovic, V., Olson, Å. & Grenville-Briggs, L., 2024, In: Agronomy for Sustainable Development. 44, 22 p., 21.Research output: Contribution to journal › Review › Research › peer-review
- Published
Do contaminants compromise the use of recycled nutrients in organic agriculture? A review and synthesis of current knowledge on contaminant concentrations, fate in the environment and risk assessment
Bünemann, E. K., Reimer, M., Smolders, E., Smith, S. R., Bigalke, M., Palmqvist, A., Brandt, Kristian Koefoed, Möller, K., Harder, R., Hermann, L., Speiser, B., Oudshoorn, F., Løes, A. K. & Magid, Jakob, 2024, In: Science of the Total Environment. 912, 18 p., 168901.Research output: Contribution to journal › Review › Research › peer-review
- Published
Does regulation hold the key to optimizing lipopeptide production in Pseudomonas for biotechnology?
Zhou, L., Höfte, M. & Hennessy, Rosanna Catherine, 2024, In: Frontiers in Bioengineering and Biotechnology. 12, 28 p., 1363183.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multifaceted photoreceptor compositions in dual phototrophic systems – A genomic analysis
Ihalainen, J. A., Dogan, B., Kurttila, M., Zeng, Y., van Elsas, J. D. & Nissinen, R., 2024, In: Journal of Molecular Biology. 436, 5, 13 p., 168412.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Niche differentiation and biogeography of Bathyarchaeia in paddy soil ecosystems: a case study in eastern China
Yi, Xingyun, Brandt, Kristian Koefoed, Xue, S., Peng, J., Wang, Y., Li, M., Deng, Y. & Duan, G., 2024, In: Environmental Microbiome. 19, 12 p., 13.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors
van Zanten, G. C., Madsen, Anne Lundager, Yde, C. C., Krych, Lukasz, Yeung, N., Saarinen, M. T., Kot, Witold, Jensen, H. M., Rasmussen, Morten Arendt, Ouwehand, A. C. & Nielsen, Dennis Sandris, 2024, In: Microorganisms. 12, 4, 18 p., 796.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The coffee leaf rust pandemic: An ever-present danger to coffee production
Koutouleas, Tina, Collinge, David B. & Boa, E., 2024, In: Plant Pathology. 73, 3, p. 522-534Research output: Contribution to journal › Review › Research › peer-review
- Published
The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
Xie, Zhuqing, He, W., Gobbi, Alex, Bertram, H. C. & Nielsen, Dennis Sandris, 2024, In: BMC Microbiology. 24, 13 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- 2023
- Published
Universiteterne har brug for en reformpause
Kropp, K., Vallgårda, Karen Asta Arnfred, Hougaard Laustsen-Kiel, A., Albrechtsen, Nicolai Jacob Wewer, Sylow, Lykke, Damgaard, R. B., Kristensen, Line Burholt, Hansen, N. C., Uusimäki, E., Jønsson, A. B., Høyland-Kroghsbo, Nina Molin, Eriksen, J. J., Rasmussen, Laura Vang, Andersen, P. E., Jensen, Louise Kruse, Lomborg, Stine, Morueta-Holme, Naia, Simonsen, K. B., Zetterberg-Nielsen, S. & Autzen, A., 29 Jan 2023, In: Berlingske Tidende.Research output: Contribution to journal › Contribution to newspaper - Comment/debate › Communication
- Published
Pseudomonas nunensis sp. nov. isolated from a suppressive potato field in Greenland
Ntana, F., Hennessy, Rosanna Catherine, Zervas, A. & Stougaard, P., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 2, 8 p., 005700.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota
Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Airborne methicillin-resistant Staphylococcus aureus, other bacteria, fungi, endotoxin, and dust in a pigeon exhibition
Madsen, A. M., Zhang, F., Zeng, Y. & Frederiksen, M. W., 2023, In: Environmental Research. 216, 7 p., 114642.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Alternative plant protection strategies for tomorrow's coffee
Koutouleas, Tina, Collinge, David B. & Ræbild, Anders, 2023, In: Plant Pathology. 72, 3, p. 409-429Research output: Contribution to journal › Review › Research › peer-review
- Published
An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette
Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial dual phototrophy was demystified
Zeng, Y., 2023, In: Trends in Microbiology. 31, 4, p. 326-328 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacteriophages Targeting both Pathogenic and Commensal Plant-Associated Bacteria
Djurhuus, Amaru Miranda, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 132 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Biochar assisted soil quality recovery in chromated copper arsenate contaminated soil
Tang, Yinqi, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 268 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Biocontrol effect of Clonostachys rosea on Fusarium graminearum infection and mycotoxin detoxification in oat (Avena sativa)
Khairullina, A., Micic, Nikola, Jørgensen, Hans Jørgen Lyngs, Bjarnholt, Nanna, Bülow, L., Collinge, David B. & Jensen, Birgit, 2023, In: Plants. 12, 3, 16 p., 500.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice
Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cessation of grazing causes biodiversity loss and homogenization of soil food webs
Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization and finding the origin of off-flavor compounds in Nile tilapia cultured in net cages in hydroelectric reservoirs, São Paulo State, Brazil
Podduturi, Raju, da Silva David, G., da Silva, R. J., Hyldig, G., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2023, In: Food Research International. 173, 15 p., 113375.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Collaborations Between Microbes and those who Love Them
Høyland-Kroghsbo, Nina Molin, 2023, In: Israel Journal of Chemistry. 63, 3 p., e202200082.Research output: Contribution to journal › Review › Research › peer-review
- Published
Complete Genome Sequence of Sphingopyxis sp. Strain PET50, a Potential Polyethylene Terephthalate (PET)-Degrading Bacterium Isolated from Compost
Lago-Maciel, A., Nielsen, Tue Kjærgaard, Jensen, K., Nicolaisen, Mette Haubjerg & Hennessy, Rosanna Catherine, 2023, In: Microbiology Resource Announcements. 12, 1, 2 p., e0097022.Research output: Contribution to journal › Journal article › Research
- Published
Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese
Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development of a high-throughput chip technology to monitor water quality, off-flavour and diseases in recirculated aquaculture systems (RAS)
Li, H., Larsen, H., Heegaard, P., Jørgensen, Niels O. G. & Jørgensen, Louise von Gersdorff, 2023, p. 40. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Dietary non-starch polysaccharides impair immunity to enteric nematode infection
Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere
Bornø, Marie Louise, Zervas, A., Bak, Frederik, Merl, T., Koren, K., Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Müller-Stöver, Dorette Sophie, 2023, In: Science of the Total Environment. 905, 13 p., 166888.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds
Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Epigenetic effects of short-chain fatty acids from the large intestine on host cells
Stein, R. A. & Riber, Leise, 2023, In: microLife. 4, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evolutionary genomic patterns of diversity and adaptability in the host-specificentomopathogenic fungus, Metarhizium acridum
mbs625, mbs625, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 212 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice
Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Danielsen, M. R., Jakobsen, Rasmus Riemer, Zachariassen, L. S. F., Castro Mejia, J. L., Brunse, Anders, Hansen, Lars Hestbjerg, Hansen, Camilla Hartmann Friis, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2023, In: Gut Microbes. 15, 1, 21 p., 2208504.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Four novel Curtobacterium phages isolated from environmental samples
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From BCA discovery in cereals to biological control of Fusarium head blight
Collinge, David B., Khairoullina, A., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2023, p. 58-59. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global biogeographic distribution of Bathyarchaeota in paddy soils
Xue, S. D., Yi, Xingyun, Cui, H. L., Li, M., Peng, J. J., Zhu, Y. G. & Duan, G. L., 2023, In: mSystems. 8, 3, 15 p., e0014323.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes
Fu, Y., Dou, Q., Smalla, K., Wang, Y., Johnson, T. A., Brandt, K. K., Mei, Z., Liao, M., Hashsham, S. A., Schäffer, A., Smidt, H., Zhang, T., Li, H., Stedtfeld, R., Sheng, H., Chai, B., Virta, M., Jiang, X., Wang, F., Zhu, Y. G. & 1 others, , 2023, In: mLife. 2, 4, p. 350-364 15 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Impacts of biochar materials on copper speciation, bioavailability, and toxicity in chromated copper arsenate polluted soil
Tang, Yinqi, Wang, Chen, Holm, Peter Engelund, Hansen, Hans Chr. Bruun & Brandt, Kristian Koefoed, 2023, In: Journal of Hazardous Materials. 459, 14 p., 132067.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impacts of dietary copper on the swine gut microbiome and antibiotic resistome
Brinck, J. E., Lassen, Simon Bo, Forouzandeh, A., Pan, T., Wang, Y. Z., Monteiro, A., Blavi, L., Solà-Oriol, D., Stein, H. H., Su, J. Q. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 857, 11 p., 159609.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into abundance, adaptation and activity of prokaryotes in arctic and Antarctic environments
Holmberg, S. M. & Jørgensen, Niels O. G., 2023, In: Polar Biology. 46, p. 381-396Research output: Contribution to journal › Review › Research › peer-review
- Published
Insights on strain 115 plant growth-promoting bacteria traits and its contribution in lead stress alleviation in pea (Pisum sativum L.) plants
Chamekh, Anissa, Kharbech, O., Fersi, C., Driss Limam, R., Brandt, Kristian Koefoed, Djebali, W. & Chouari, R., 2023, In: Archives of Microbiology. 205, 12 p., 1.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intestinal epigenotype of Atlantic salmon (Salmo salar) associates with tenacibaculosis and gut microbiota composition
Hansen, Søren Blikdal, Bozzi, D., Mak, Sarah Siu Tze, Clausen, C. G., Nielsen, Tue Kjærgaard, Kodama, M., Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Limborg, Morten Tønsberg, 2023, In: Genomics. 115, 3, 9 p., 110629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isothiazolinone inhibition of soil microbial activity persists despite biocide dissipation
Fernández-Calviño, D., Rousk, J., Bååth, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2023, In: Soil Biology and Biochemistry. 178, 9 p., 108957.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Limited impacts of high doses of dietary copper on the gut bacterial metal resistome explain negligible co-selection of antibiotic resistance
Forouzandeh, A., Lassen, Simon Bo, Brinck, J. E., Zhou, Y. Y., Zhu, J., Solà-Oriol, D., Monteiro, A., Hao, X., Su, J. Q., Stein, H. H., Pérez, J. F. & Brandt, Kristian Koefoed, 2023, In: Science of the Total Environment. 889, 11 p., 164183.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pheno- and Genotyping of Three Novel Bacteriophage Genera That Target a Wheat Phyllosphere Sphingomonas Genus
Riber, Leise, Carstens, Alexander Byth, Dougherty, Peter Erdmann, Roy, C., Willenbücher, K., Hille, F., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2023, In: Microorganisms. 11, 7, 17 p., 1831.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic variation and genomic variation in insect virulence traits reveal patterns of intraspecific diversity in a locust-specific fungal pathogen
mbs625, mbs625, Meyling, Nicolai Vitt & de Fine Licht, Henrik Hjarvard, 2023, In: Journal of Evolutionary Biology. 36, 10, p. 1438-1454 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant disease management in the post-genomic era: from functional genomics to genome editing, Volume II: Editorial
Sarrocco, S., Herrera-Estrella, A. & Collinge, David B., 2023, In: Frontiers in Microbiology. 14, 3 p., 1203870.Research output: Contribution to journal › Editorial › Research
- Published
Potential sources and producers of 2-methylisoborneol and geosmin in a river supplying a drinking water treatment plant
Franklin, H. M., Podduturi, Raju, Jørgensen, Niels O. G., Roberts, D. T., Schlüter, L. & Burford, M. A., 2023, In: Chemical Engineering Journal Advances. 14, 12 p., 100455.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of Cyanotoxin Episodes in Freshwater: A Case Study on Microcystin and Saxitoxin in the Lobo Reservoir, São Paulo State, Brazil
Moraes, M. D. A. B., Rodrigues, R. D. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., 2023, In: Environments. 10, 8, 16 p., 143.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pruning Wound Protection Products Induce Alterations in the Wood Mycobiome Profile of Grapevines
Del Frari, G., Aggerbeck, M. R., Gobbi, Alex, Ingrà, C., Volpi, L., Nascimento, T., Ferrandino, A., Hansen, Lars Hestbjerg & Ferreira, R. B., 2023, In: Journal of Fungi. 9, 4, 20 p., 488.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Relationship between fungal endophytes and plant disease: C9.3-3
Jensen, Birgit, Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2023, p. 280. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Removal of a complex VOC mixture by potted plants - effects on soil microorganisms
Dela Cruz, Majbrit, Svenningsen, N. B., Nybroe, O., Müller, Renate & Christensen, Jan H., 2023, In: Environmental Science and Pollution Research. 30, p. 55372-55381Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity
Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Response of bacterial communities to the application of sewage sludge biochar and Penicillium aculeatum in rhizosphere and bulk soil of wheat
Efthymiou, A., Nunes, I., Jensen, Birgit & Jakobsen, Iver, 2023, In: Applied Soil Ecology. 190, 10 p., 104986.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Response of microbial taxonomic and nitrogen functional attributes to elevated nitrate in suburban groundwater
Zhang, L., He, W., Huang, F., He, W., Zhou, P., Chen, C., Rensing, C., Brandt, Kristian Koefoed, He, J., Liu, F., Zhao, Y. & Guo, H., 2023, In: Science of the Total Environment. 874, 12 p., 162524.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial controls of methane uptake in upland soils across climatic and geological regions in Greenland
D'Imperio, Ludovica, Li, B., Tiedje, J. M., Oh, Y., Christiansen, Jesper Riis, Kepfer Rojas, Sebastian, Westergaard-Nielsen, Andreas, Brandt, Kristian Koefoed, Holm, Peter Engelund, Wang, P., Ambus, Per Lennart & Elberling, Bo, 2023, In: Communications Earth & Environment. 4, 1, 10 p., 461.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal heterogeneity of nitrogen transformation potentials in a freshwater estuarine system
Lv, Jiali, Wang, S., Liu, B. & Song, X., 2023, In: Science of the Total Environment. 859, Part 2, 160335.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Swarming of P. aeruginosa: Through the lens of biophysics
Bru, J., Kasallis, S. J., Zhuo, Q., Høyland-Kroghsbo, Nina Molin & Siryaporn, A., 2023, In: Biophysics reviews. 4, 3, 18 p., 031305.Research output: Contribution to journal › Review › Research › peer-review
- Published
The Hitchhiker’s Guide to Statistical Analysis of Feature-based Molecular Networks from Non-Targeted Metabolomics Data
Pakkir Shah, A. K., Walter, A., Ottosson, F., Russo, F., Navarro-Díaz, M., Boldt, J., Kalinski, J-C., Kontou, E. E., Elofson, J., Polyzois, A., González-Marín, C., Farrell, S., Aggerbeck, M. R., Pruksatrakul, T., Chan, N., Wang, Y., Pöchhacker, M., Brungs, C., Cámara, B., Caraballo-Rodríguez, A. M. & 37 others, , 2023, ChemRxiv, 83 p.Research output: Working paper › Preprint › Research
- Published
The Role of Cyclic Lipopeptides in Bacterial-Plant Interactions
Guan, Ying, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 205 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The great divide: rhamnolipids mediate separation between P. aeruginosa and S. aureus
Bru, J., Kasallis, S. J., Chang, R., Zhuo, Q., Nguyen, J., Pham, P., Warren, E., Whiteson, K., Høyland-Kroghsbo, Nina Molin, Limoli, D. H. & Siryaporn, A., 2023, In: Frontiers in Cellular and Infection Microbiology. 13, 16 p., 1245874.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses
Zhai, Xichuan, Castro-Mejía, J. L., Gobbi, Alex, Aslampaloglou, A., Kot, Witold, Nielsen, Dennis Sandris & Deng, Ling, 2023, In: Microbiome. 11, 12 p., 193.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Three novel Erwinia billingiae phages isolated from organic waste represent three new genera
Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Kot, Witold & Hansen, Lars Hestbjerg, 2023, In: Archives of Virology. 168, 7 p., 71.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Understanding the mechanisms underlying biological control of Fusarium diseases in cereals
Petrucci, A., Khairullina, A., Sarrocco, S., Jensen, Dan Funck, Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2023, In: European Journal of Plant Pathology. 167, p. 453-476Research output: Contribution to journal › Review › Research › peer-review
- Published
Used Nasogastric Feeding Tubes from Neonates Contain Infant-Specific Bacterial Profiles
Meinich Juhl, S., Angeliki Krogfelt, K., Kot, Witold, Nielsen, Dennis Sandris & Krych, Lukasz, 2023, In: Microorganisms. 11, 6, 11 p., 1365.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
Dougherty, Peter Erdmann, Nielsen, Tue Kjærgaard, Riber, Leise, Lading, H. H., Forero Junco, Laura Milena, Kot, Witold, Raaijmakers, J. M. & Hansen, Lars Hestbjerg, 2023, In: ISME Journal. 17, 12, p. 2415-2425Research output: Contribution to journal › Journal article › Research › peer-review
- Published
“Impacts of treated wastewater on soil properties with special reference to the soil microbiome and resistome in irrigated Tunisian agricultural soils”.
Chamekh, Anissa, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 159 p.Research output: Book/Report › Ph.D. thesis › Research
- 2022
- Published
2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem
Qian, P., Gardiner, A. T., Šímová, I., Naydenova, K., Croll, T. I., Jackson, P. J., Nupur, Kloz, M., Čubáková, P., Kuzma, M., Zeng, Y., Castro-Hartmann, P., van Knippenberg, B., Goldie, K. N., Kaftan, D., Hrouzek, P., Hájek, J., Agirre, J., Siebert, C. A., Bína, D. & 7 others, , 2022, In: Science Advances. 8, 7, 12 p., eabk3139.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs
Gobbi, Alex, Acedo, A., Imam, N., Santini, R. G., Ortiz-Alvarez, R., Ellegaard-Jensen, L., Belda, I. & Hansen, Lars Hestbjerg, 2022, In: Communications Biology . 5, 9 p., 241.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Active antibiotic resistome in soils unraveled by single-cell isotope probing and targeted metagenomics
Li, H. Z., Yang, K., Liao, H., Lassen, Simon Bo, Su, J. Q., Zhang, X., Cui, L. & Zhu, Y. G., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 40, 10 p., e2201473119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
Nielsen, Tue Kjærgaard, Browne, Patrick Denis & Hansen, Lars Hestbjerg, 2022, In: GigaScience. 11, 17 p., giac072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of heavy metals from pangasius and tilapia aquaculture in Bangladesh and human consumption risk
Ahsan, M. E., Islam, S. R., Razzak, M. A., Ali, M. L. & Haque, M. M., 2022, In: Aquaculture International. 30, 3, p. 1407-1434 28 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Back to our roots: exploring the role of root morphology as a mediator of beneficial plant–microbe interactions
Herms, Courtney Horn, Hennessy, Rosanna Catherine, Bak, Frederik, Dresbøll, Dorte Bodin & Nicolaisen, Mette Haubjerg, 2022, In: Environmental Microbiology. 24, 8, p. 3264-3272Research output: Contribution to journal › Review › Research › peer-review
- Published
Bacterial composition associated with different traditions of salted and dried fish across countries
Bahrndorff, S., Menanteau-Ledouble, S., Stidsborg, S., Jørgensen, Niels O. G., Hoque, M. S. & Nielsen, J. L., 2022, In: Food Bioscience. 50, 7 p., 101991.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Biological control of plant diseases – what has been achieved and what is the direction?
Collinge, David B., Jensen, Dan Funck, Rabiey, M., Sarrocco, S., Shaw, M. W. & Shaw, R., 2022, In: Plant Pathology. 71, 5, p. 1024-1047Research output: Contribution to journal › Review › Research › peer-review
- Published
Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil
Gómez-Muñoz, B., Efthymiou, A., Dubey, M., Sølve, Jonathan, Nicolaisen, Mette Haubjerg, Jensen, Dan Funck, Nybroe, O. & Larsen, J., 2022, In: Fungal Biology. 126, 5, p. 356-365 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of five marine family 29 glycoside hydrolases reveals an α-l-fucosidase targeting specifically Fuc(α1,4)GlcNAc
Schultz-Johansen, M., Stougaard, P., Svensson, B. & Teze, D., 2022, In: Glycobiology. 32, 6, p. 529-539Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue
Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes
Bista, P. K., Pillai, D., Roy, C., Scaria, J. & Narayanan, S. K., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e00297-22.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment
Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Computational Tools for the Analysis of Uncultivated Phage Genomes
Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.Research output: Contribution to journal › Review › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers
Peixoto, L., Olesen, J. E., Elsgaard, L., Lønne Enggrob, K., C. Banfield, C., Dippold, M. A., Nicolaisen, Mette Haubjerg, Bak, Frederik, Zang, H., Dresbøll, Dorte Bodin, Thorup-Kristensen, Kristian & Rasmussen, J., 2022, In: Scientific Reports. 12, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil
Bak, Frederik, Lyhne-Kjærbye, A., Tardif, S., Dresbøll, Dorte Bodin, Nybroe, O. & Nicolaisen, Mette Haubjerg, 2022, In: Phytobiomes Journal. 6, 3, p. 236-246 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties
Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Bak, Frederik, Guan, Ying, Herms, Courtney Horn, Molina Zamudio, Kitzia Yashvelt, Thybo Ganzhorn, D., Müller-Stöver, Dorette Sophie, Ahmad, J., Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology resource announcements. 11, 5, 3 p., e0022222.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs
Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination
Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enzyme activity profiling for physiological phenotyping within functional phenomics: plant growth and stress responses
Jammer, A., Akhtar, S. S., Amby, Daniel Buchvaldt, Pandey, Chandana, Mekureyaw, M. F., Bak, Frederik, Roth, P. M. & Roitsch, Thomas Georg, 2022, In: Journal of Experimental Botany. 73, 15, p. 5170-5198Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data
Mas-Sandoval, A., Pope, N. S., Nielsen, Knud Nor, Altinkaya, Isin, Fumagalli, M. & Korneliussen, Thorfinn Sand, 2022, In: GigaScience. 11, 9 p., giac032.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fate of Saxitoxins in Lake Water: Preliminary Testing of Degradation by Microbes and Sunlight
Jørgensen, Niels O. G., Podduturi, Raju, Michelsen, C. F., Jepsen, T. & Moraes, M. D. A. B., 2022, In: Water. 14, 21, 18 p., 3556.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fecal filtrate transplantation protects against necrotizing enterocolitis
Brunse, Anders, Deng, Ling, Pan, X., Hui, Y., Castro Mejia, J. L., Kot, Witold, Nguyen, Duc Ninh, Secher, Jan Bojsen-Møller, Nielsen, Dennis Sandris & Thymann, Thomas, 2022, In: The ISME Journal. 16, p. 686–694Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From Alpha Diversity to Zzz: Interactions among sleep, the brain, and gut microbiota in the first year of life
Schoch, S. F., Castro-Mejía, J. L., Krych, Lukasz, Leng, B., Kot, Witold, Kohler, M., Huber, R., Rogler, G., Biedermann, L., Walser, J. C., Nielsen, Dennis Sandris & Kurth, S., 2022, In: Progress in Neurobiology. 209, 11 p., 102208.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungal Endophytes Isolated from Elymus repens, a Wild Relative of Barley, Have Potential for Biological Control of Fusarium culmorum and Pyrenophora teres in Barley
Høyer, A. K., Jørgensen, Hans Jørgen Lyngs, Hodkinson, T. R. & Jensen, Birgit, 2022, In: Pathogens. 11, 14 p., 1097.Research output: Contribution to journal › Journal article › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
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Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors
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