Microbial Ecology and Biotechnology

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  1. Published

    Long-term fertilisation form, level and duration affect the diversity, structure and functioning of soil microbial communities in the field

    van der Bom, Frederik, Nunes, I., Raymond, Nelly Sophie, Hansen, Veronika, Bonnichsen, L., Magid, Jakob, Nybroe, O. & Jensen, Lars Stoumann, 2018, In: Soil Biology & Biochemistry. 122, p. 91-103 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors

    van Zanten, G. C., Madsen, Anne Lundager, Yde, C. C., Krych, Lukasz, Yeung, N., Saarinen, M. T., Kot, Witold, Jensen, H. M., Rasmussen, Morten Arendt, Ouwehand, A. C. & Nielsen, Dennis Sandris, 2024, In: Microorganisms. 12, 4, 18 p., 796.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Evolutionary genomic patterns of diversity and adaptability in the host-specificentomopathogenic fungus, Metarhizium acridum

    mbs625, mbs625, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 212 p.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Interaction between endophytic Proteobacteria strains and Serendipita indica enhances biocontrol activity against fungal pathogens

    del Barrio-Duque, A., Samad, A., Nybroe, O., Antonielli, L., Sessitsch, A. & Compant, S., 2020, In: Plant and Soil. 451, 1-2, p. 277-305 29 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    The aerobiome uncovered: Multi-marker metabarcoding reveals potential drivers of turn-over in the full microbial community in the air

    de Groot, G. A., Geisen, S., Wubs, E. R. J., Meulenbroek, L., Laros, I., Snoek, L. B., Lammertsma, D. R., Hansen, Lars Hestbjerg & Slim, P. A., 2021, In: Environment International. 154, 106551.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Soil biota, antimicrobial resistance and planetary health

    Zhu, Y. G., Zhao, Y., Zhu, D., Gillings, M., Penuelas, J., Ok, Y. S., Capon, A. & Banwart, S., Oct 2019, In: Environment International. 131, p. 1-7 105059.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    The phytonutrient cinnamaldehyde limits intestinal inflammation and enteric parasite infection

    Zhu, L., Andersen-Civil, A. I. S., Myhill, L. J., Thamsborg, Stig Milan, Kot, Witold, Krych, Lukasz, Nielsen, Dennis Sandris, Blanchard, A. & Williams, Andrew Richard, 2022, In: Journal of Nutritional Biochemistry. 100, 10 p., 108887.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Does regulation hold the key to optimizing lipopeptide production in Pseudomonas for biotechnology?

    Zhou, L., Höfte, M. & Hennessy, Rosanna Catherine, 2024, In: Frontiers in Bioengineering and Biotechnology. 12, 28 p., 1363183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Mobile Incubator for Iron(III) Reduction in the Gut of the Soil-Feeding Earthworm Pheretima guillelmi and Interaction with Denitrification

    Zhou, G. W., Yang, X. R., Sun, A. Q., Li, H., Lassen, Simon Bo, Zheng, B. X. & Zhu, Y. G., 16 Apr 2019, In: Environmental Science and Technology. 53, 8, p. 4215-4223

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Evolutionary conserved nitric oxide synthesis proteins responding to bacterial MAMPs are located to the endoplasmic reticulum and are also involved in secondary metabolite synthesis and sterol production

    Zheng, W., Li, H., Ipcho, S., Fang, W., Hennessy, Rosanna Catherine, Hansen, B. Ø., Lu, G., Wang, Z., Newman, M. & Olsson, S., 2021, Cold Spring Harbor Laboratory, 43 p. (bioRxiv).

    Research output: Working paper › Preprint

  11. Published

    Selenite reduction by the obligate aerobic bacterium Comamonas testosteroni S44 isolated from a metal-contaminated soil

    Zheng, S., Su, J., Wang, L., Yao, R., Wang, D., Deng, Y., Wang, R., Wang, G. & Rensing, C. G. T., 2014, In: BMC Microbiology. 14, 14 p., 204.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    How to disentangle microbially functional complexity: an insight from the network analysis of C, N, P and S cycling genes

    Zheng, B., Zhao, Y., Bi, Q., Zhou, G., Wang, H., Hao, X. & Ding, K., 2019, In: Science Bulletin. 64, 16, p. 1129-1131

    Research output: Contribution to journal › Editorial › Research

  13. Published

    Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil

    Zheng, B., Hao, X., Ding, K., Zhou, G., Chen, Q., Zhang, J. & Zhu, Y., 2017, In: Scientific Reports. 7, 10 p., 42284.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil

    Zheng, B. X., Bi, Q. F., Hao, X., Zhou, G. W. & Yang, X. R., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 8, p. 2514-2519 6 p., 001916.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Responses to soil pH gradients of inorganic phosphate solubilizing bacteria community

    Zheng, B. X., Zhang, D. P., Wang, Y., Hao, X., Wadaan, M. A. M., Hozzein, W. N., Peñuelas, J., Zhu, Y. G. & Yang, X. R., 2019, In: Scientific Reports. 9, p. 1-8 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Effects of two different high-fidelity DNA polymerases on genetic analysis of the cyanobacterial community structure in a subtropical deep freshwater reservoir

    Zhen, Z., Liu, J., Rensing, C. G. T., Yan, C. & Zhang, Y., 2017, In: Archives of Microbiology. 199, 1, p. 125-134 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Evidence for co-selection of antibiotic resistance genes and mobile genetic elements in metal polluted urban soils

    Zhao, Y., Cocerva, T., Cox, S., Tardif, S., Su, J. Q., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Mar 2019, In: Science of the Total Environment. 656, p. 512-520

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    AsChip: A High-Throughput qPCR Chip for Comprehensive Profiling of Genes Linked to Microbial Cycling of Arsenic

    Zhao, Y., Su, J. Q., Ye, J., Rensing, C., Tardif, S., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Jan 2019, In: Environmental Science and Technology. 53, 2, p. 798-807 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Feed additives shift gut microbiota and enrich antibiotic resistance in swine gut

    Zhao, Y., Su, J., An, X., Huang, F., Rensing, C., Brandt, Kristian Koefoed & Zhu, Y., 15 Apr 2018, In: Science of the Total Environment. 621, p. 1224-1232 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Antibiotic resistome in the livestock and aquaculture industries: Status and solutions

    Zhao, Y., Yang, Q. E., Zhou, X., Wang, F., Muurinen, J., Virta, M. P., Brandt, Kristian Koefoed & Zhu, Y., 2021, In: Critical Reviews in Environmental Science and Technology. 51, 19, p. 2159-2196 38 p.

    Research output: Contribution to journal › Review › Research › peer-review

  21. Published

    Development and Application of High-throughput qPCR based Chips to study Arsenic Biotransformation and Antibiotic Resistance Genes in Contaminated Environments

    Zhao, Y., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  22. Published

    Germin‐like oxalate oxidase, a H2O2‐producing enzyme, accumulates in barley attacked by the powdery mildew fungus

    Zhang, Z., Collinge, David B. & Thordal-Christensen, Hans, 1 Jan 1995, In: The Plant Journal. 8, 1, p. 139-145 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil

    Zhang, Y., Hao, X., Garcia-Lemos, A. M., Nunes, I., Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Applied and Environmental Microbiology. 86, 10, 16 p., ARTN e02969-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Replication Protein Rep Provides Selective Advantage to Viruses in the Presence of CRISPR-Cas Immunity

    Zhang, W., Bhoobalan-Chitty, Y., Zhai, Xichuan, Hui, Y., Hansen, Lars Hestbjerg, Deng, Ling & Peng, Xu, 2023, In: CRISPR Journal. 6, 1, p. 32-42

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Cyanobacteria-mediated arsenic redox dynamics is regulated by phosphorus in aquatic environments

    Zhang, S., Rensing, C. G. T. & Zhu, Y., 2014, In: Environmental Science & Technology (Washington). 48, 2, p. 994-1000 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark

    Zhang, S., Wang, D., Wang, Y., Hasman, H., Aarestrup, F. M., Alwathnani, H. A., Zhu, Y. & Rensing, C. G. T., 2015, In: Standards in Genomic Sciences. 10, 10 p., 35.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Biomethylation and volatilization of arsenic by the marine microalgae Ostreococcus tauri

    Zhang, S., Sun, G., Yin, X., Rensing, C. G. T. & Zhu, Y., 2013, In: Chemosphere. 93, 1, p. 47-53 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Response of microbial taxonomic and nitrogen functional attributes to elevated nitrate in suburban groundwater

    Zhang, L., He, W., Huang, F., He, W., Zhou, P., Chen, C., Rensing, C., Brandt, Kristian Koefoed, He, J., Liu, F., Zhao, Y. & Guo, H., 2023, In: Science of the Total Environment. 874, 12 p., 162524.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement

    Zhang, H., Xie, J., Fu, Y., Cheng, J., Qu, Z., Zhao, Z., Cheng, S., Chen, T., Li, B., Wang, Q., Liu, X., Tian, B., Collinge, David B. & Jiang, D., 2020, In: Molecular Plant. 13, 10, p. 1420-1433 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    The impact of storage buffer and storage conditions on fecal samples for bacteriophage infectivity and metavirome analyses

    Zhai, Xichuan, Castro-Mejía, J. L., Gobbi, Alex, Aslampaloglou, A., Kot, Witold, Nielsen, Dennis Sandris & Deng, Ling, 2023, In: Microbiome. 11, 12 p., 193.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties

    Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Bak, Frederik, Guan, Ying, Herms, Courtney Horn, Molina Zamudio, Kitzia Yashvelt, Thybo Ganzhorn, D., Müller-Stöver, Dorette Sophie, Ahmad, J., Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology resource announcements. 11, 5, 3 p., e0022222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp

    Zervas, A., Zeng, Y., Madsen, A. M. & Hansen, Lars Hestbjerg, 1 Oct 2019, In: Genome Biology and Evolution. 11, 10, p. 2895-2908

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier

    Zeng, Y., Chen, X., Madsen, A. M., Zervas, A., Nielsen, Tue Kjærgaard, Andrei, A., Lund-Hansen, L. C., Liu, Y. & Hansen, Lars Hestbjerg, 2020, In: mBio. 11, 6, 22 p., e02641-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Bacterial dual phototrophy was demystified

    Zeng, Y., 2023, In: Trends in Microbiology. 31, 4, p. 326-328 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Phylogenetic diversity of ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit genes of bacterioplankton in the East China Sea

    Zeng, Y., Jiao, N., Cai, H., Chen, X. & Wei, C., 2004, In: Acta Oceanologica Sinica. 23, 4, p. 673-685 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Plant pathology in a changing world

    Yuen, J., Collinge, David B., Djurle, A. & Tronsmo, A. M., 2020, Plant Pathology and Plant Diseases. CABI International, p. 379-386 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  37. Published

    History of plant pathology.

    Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 11-18 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  38. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Niche differentiation and biogeography of Bathyarchaeia in paddy soil ecosystems: a case study in eastern China

    Yi, Xingyun, Brandt, Kristian Koefoed, Xue, S., Peng, J., Wang, Y., Li, M., Deng, Y. & Duan, G., 2024, In: Environmental Microbiome. 19, 12 p., 13.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Functional Characterization of Type III-A CRISPR-Cas in a Clinical Human Methicillin-R Staphylococcus aureus Strain

    Yang, L., Mikkelsen, K., Grané, O. L. I., Wang, Z., Tang, Y., Jiao, X., Ingmer, Hanne, Høyland-Kroghsbo, Nina Molin & Li, Q., 2021, In: CRISPR Journal. 4, 5, p. 686-698

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A cerato-platanin protein SsCP1 targets plant PR1 and contributes to virulence of Sclerotinia sclerotiorum

    Yang, G., Tang, L., Gong, Y., Xie, J., Fu, Y., Jiang, D., Li, G., Collinge, David B., Chen, W. & Cheng, J., 2018, In: New Phytologist. 217, 2, p. 739-755 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Global biogeographic distribution of Bathyarchaeota in paddy soils

    Xue, S. D., Yi, Xingyun, Cui, H. L., Li, M., Peng, J. J., Zhu, Y. G. & Duan, G. L., 2023, In: mSystems. 8, 3, 15 p., e0014323.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates

    Xie, Zhuqing, He, W., Gobbi, Alex, Bertram, H. C. & Nielsen, Dennis Sandris, 2024, In: BMC Microbiology. 24, 13 p., 83.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Cadmium accumulation in the rootless macrophyte Wolffia globosa and its potential for phytoremediation

    Xie, W., Huang, Q., Li, G., Rensing, C. G. T. & Zhu, Y., 2013, In: International Journal of Phytoremediation. 15, 4, p. 385-397 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Influence of two-phase anaerobic digestion on fate of selected antibiotic resistance genes and class I integrons in municipal wastewater sludge

    Wu, Y., Cui, E., Zuo, Y., Cheng, W., Rensing, C. G. T. & Chen, H., 2016, In: Bioresource Technology. 211, p. 414-421 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation

    Wong, G. C. L., Antani, J. D., Lele, P., Nan, B., Kühn, M. J., Persat, A., Bru, J-L., Høyland-Kroghsbo, N. M., Siryaporn, A., Conrad, J., Carrara, F., Yawata, Y., Stocker, R., Brun, Y., Whitfield, G., Lee, C., de Anda, J., Schmidt, W. C., Golestanian, R., O'Toole, G. A. & 21 others, Floyd, K., Yildiz, F., Yang, S., Jin, F., Toyofuku, M., Eberl, L., Nobuhiko, N., Zacharoff, L., El-Naggar, M. Y., Yalcin, S. E., Malvankar, N., Rojas-Andrade, M. D., Hochbaum, A., Yan, J., Stone, H. A., Wingreen, N. S., Bassler, B., Wu, Y., Xu, H., Drescher, K. & Dunkel, J., 2021, In: Physical Biology. 18, 5, 50 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Soil bacteria and protists show different sensitivity to polycyclic aromatic hydrocarbons at controlled chemical activity

    Winding, A., Modrzyński, J. J., Christensen, Jan H., Brandt, Kristian Koefoed & Mayer, P., 2019, In: FEMS Microbiology Letters. 366, 17, fnz214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    High throughput in vitro characterization of pectins for pig(let) nutrition

    Wiese, M., Hui, Y., Holck, J., Sejberg, J. J. P., Daures, C., Maas, E., Kot, Witold, Borne, J. M., Khakimov, Bekzod, Thymann, Thomas & Nielsen, Dennis Sandris, 2021, In: BMC Animal Microbiome. 3, 15 p., 69.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Accumulation of a putative guanidine compound in relation to other early defence reactions in epidermal cells of barley and wheat exhibiting resistance to Erysiphe graminis f.sp. hordei

    Wei, Y. D., De Neergaard, E., Thordal-Christensen, Hans, Collinge, David B. & Smedegaard-Petersen, V., 1 Jan 1994, In: Physiological and Molecular Plant Pathology. 45, 6, p. 469-484 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Potential feedback mediated by soil microbiome response to warming in a glacier forefield

    Wang, Y., Ma, A., Liu, G., Ma, J., Wei, J., Zhou, H., Brandt, Kristian Koefoed & Zhuang, G., 2020, In: Global Change Biology. 26, 2, p. 697-708

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Genome sequence of selenium-solubilizing bacterium Caulobacter vibrioides T5M6

    Wang, Y., Qin, Y., Kot, W., Zhang, F., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C. G. T., 2016, In: Genome Announcements. 4, 1, 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Fate of arsenate following arsenite oxidation in Agrobacterium tumefaciens GW4

    Wang, Q., Qin, D., Zhang, S., Wang, L., Li, J., Rensing, C. G. T., McDermott, T. R. & Wang, G., 2015, In: Environmental Microbiology. 17, 6, p. 1926-1940 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Translational coupling of nasST expression in Azotobacter vinelandii prevents overexpression of the nasT gene

    Wang, B., Rensing, C. G. T., Pierson , L. S., Zhao, H. & Kennedy, C., 2014, In: F E M S Microbiology Letters. 361, 2, p. 123-130 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    A pathogen-induced gene of barley encodes a HSP90 homologue showing striking similarity to vertebrate forms resident in the endoplasmic reticulum

    Walther-Larsen, H., Brandt, J., Collinge, David B. & Thordal-Christensen, Hans, 1 Mar 1993, In: Plant Molecular Biology. 21, 6, p. 1097-1108 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Testing the yield of a pilot-scale bubble column photobioreactor for cultivation of the microalga Rhodomonas salina as feed for intensive calanoid copepod cultures

    Vu, M. T. T., Jepsen, P. M., Jørgensen, Niels O. G., Hansen, B. W. & Nielsen, S. L., 2019, In: Aquaculture Research. 50, 1, p. 63-71 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Identification and Characterization of a β-N-Acetylhexosaminidase with a Biosynthetic Activity from the Marine Bacterium Paraglaciecola hydrolytica S66T

    Visnapuu, T., Teze, D., Kjeldsen, C., Lie, A., Duus, J. Ø., André-Miral, C., Pedersen, L. H., Stougaard, P. & Svensson, B., 2020, In: International Journal of Molecular Sciences (Online). 21, 2, 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Improving diversity in cultures of bacteria from an extreme environment

    Vester, J. K., Glaring, M. A. & Stougaard, P., 2013, In: Canadian Journal of Microbiology. 59, 8, p. 581-586 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    An exceptionally cold-adapted alpha-amylase from a metagenomic library of a cold and alkaline environment

    Vester, J. K., Glaring, M. A. & Stougaard, P., 2015, In: Applied Microbiology and Biotechnology. 99, 2, p. 717-727 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Improved cultivation and metagenomics as new tools for bioprospecting in cold environments

    Vester, J. K., Glaring, M. A. & Stougaard, P., 2015, In: Extremophiles. 19, 1, p. 17-29 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  60. Published

    Microbial diversity and enzymes in ikaite columns: a cold and alkaline environment in Greenland

    Vester, J. K., Lylloff, J. E., Glaring, M. A. & Stougaard, P., 2013, Polyextremophiles: life under multiple forms of stress. Seckback, J., Oren, A. & Stan-Lotter, H. (eds.). Springer, Vol. IV. p. 365-380 16 p. (Cellular Origin, Life in Extreme Habitats and Astrobiologuy, Vol. 27).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  61. Published

    Novel Industrial Enzymes from Uncultured Arctic Microorganisms: Cold- and Alkaline-active Enzymes of Microbial Origin from the Ikaite Columns of SW Greenland

    Vester, J. K., 2014, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  62. Published

    Discovery of novel enzymes with industrial potential from a cold and alkaline environment by a combination of functional metagenomics and culturing

    Vester, J. K., Glaring, M. A. & Stougaard, P., 2014, In: Microbial Cell Factories. 13, 14 p., 72.

    Research output: Contribution to journal › Journal article › Research › peer-review

  63. Published

    Dietary non-starch polysaccharides impair immunity to enteric nematode infection

    Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Accumulation of defence-related transcripts and cloning of a chitinase mRNA from pea leaves (Pisum sativum L.) inoculated with Ascochyta pisi Lib.

    Vad, K., de Neergaard, E., Madriz Ordenana, Kenneth, Mikkelsen, J. D. & Collinge, David B., 1993, In: Plant Science. 92, 1, p. 69-79 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Induction, purification and characterization of chitinase isolated from pea leaves inoculated with Ascochyta pisi

    Vad, K., Mikkelsen, Jens D. & Collinge, David B., 1 Apr 1991, In: Planta. 184, 1, p. 24-29 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    First report of Neonectria neomacrospora on Abies concolor in Finland

    Uimari, A., Poteri, M., Vuorinen, M. & Nielsen, Knud Nor, 2018, In: New Disease Reports. 38, 1, p. 3 1 p.

    Research output: Contribution to journal › Comment/debate › Research

  67. Published

    Biological Control of Plant Diseases

    Tronsmo, A., Collinge, David B., Alabouvette, C. & Jensen, Dan Funck, 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 289-306 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  68. Published

    Plant Pathology and Plant Diseases

    Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 2020, CABI Publishing. 400 p.

    Research output: Book/Report › Book › Education › peer-review

  69. Published

    Plant Pathology and Plant Diseases

    Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 1-439 439 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  70. Published

    What is a Plant Disease?

    Tronsmo, A. M., Munk, Lisa, Djurle, A., Yuen, J. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 3-10 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  71. Published

    The Disease Cycle and Lifestyles

    Tronsmo, A. M., Munk, Lisa, Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 19-36 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  72. Published

    Plant Health Legislation

    Tronsmo, A. M., Collinge, David B. & Yuen, J., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 366-376 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  73. Published

    In situ dynamics of O2, pH, light and photosynthesis in ikaite tufa columns (Ikka Fjord, Greenland) - a unique microbial habitat

    Trampe, Erik, Larsen, Jens Erik Nybo, Glaring, M. A., Stougaard, P. & Kühl, Michael, 2016, In: Frontiers in Microbiology. 7, 13 p., 722.

    Research output: Contribution to journal › Journal article › Research › peer-review

  74. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats

    Thøgersen, R., Castro-Mejía, J. L., Sundekilde, U. K., Hansen, Lars Hestbjerg, Gray, N., Kuhnle, G., Jørgensen, Niklas Rye, Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2020, In: Food Chemistry. 331, 10 p., 127291.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Arctic Biotechnology – Sustainable Products and Processes from Arctic Biological Resources

    Thøgersen, M. S., Hennessy, Rosanna Catherine & Stougaard, P., 2017.

    Research output: Contribution to conference › Poster › Research

  77. Published

    Transglycosylating β-d-galactosidase and α-l-fucosidase from Paenibacillus sp. 3179 from a hot spring in East Greenland

    Thøgersen, M. S., Christensen, S. J., Jepsen, M., Pedersen, L. H. & Stougaard, P., 2020, In: MicrobiologyOpen. 9, 3, 15 p., e980.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Digging Deeper for Agricultural Resources, the Value of Deep Rooting

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E., Crews, T. E., Hinsinger, P., Kirkegaard, J., Pierret, A. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 406-417

    Research output: Contribution to journal › Review › Research › peer-review

  79. Published

    Exposing Deep Roots: A Rhizobox Laboratory

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 418-419

    Research output: Contribution to journal › Journal article › Research

  80. Published

    Abundance and diversity of culturable Pseudomonas constitute sensitive indicators for adverse long-term copper impacts in soil

    Thorsen, M. K., Brandt, Kristian Koefoed & Nybroe, O., 2013, In: Soil Biology & Biochemistry. 57, p. 933-935 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  81. Published

    cDNA cloning and characterization of two barley peroxidase transcripts induced differentially by the powdery mildew fungus Erysiphe graminis

    Thordal-Christensen, Hans, Brandt, J., Cho, B. H., Rasmussen, S. K., Gregersen, P. L., Smedegaard-Petersen, V. & Collinge, David B., 1 Jan 1992, In: Physiological and Molecular Plant Pathology. 40, 6, p. 395-409 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  82. Published

    Survival of chicken ascarid eggs exposed to different soil types and fungi

    Thapa, S., Mejer, Helena, Thamsborg, Stig Milan, Lekfeldt, J. D. S., Wang, R., Jensen, Birgit, Magid, Jakob & Meyling, Nicolai Vitt, 2017, In: Agriculture, Ecosystems & Environment. 121, p. 143-151 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Restoration of growth by manganese in a mutant strain of Escherichia coli lacking most known iron and manganese uptake systems

    Taudte, N., German, N., Zhu, Y., Grass, G. & Rensing, C. G. T., 2016, In: BioMetals. 29, 3, p. 433-450 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    The willow microbiome is influenced by soil petroleum-hydrocarbon concentration with plant compartment-specific effects

    Tardif, S., Yergeau, E., Tremblay, J., Legendre, P., Whyte, L. G. & Greer, C. W., 2016, In: Frontiers in Microbiology. 7, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Factors governing the solid phase distribution of Cr, Cu and As in contaminated soil after 40 years of ageing

    Tardif, S., Cipullo, S., Sø, H. U., Wragg, J., Holm, Peter Engelund, Coulon, F., Brandt, Kristian Koefoed & Cave, M., 20 Feb 2019, In: Science of the Total Environment. 652, p. 744-754

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Soil – Microbiome – Contaminant Interactions: Pre and Post Remediation of Chromated Copper Arsenate Contaminated Soil

    Tardif, S., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  87. Published

    Biochar assisted soil quality recovery in chromated copper arsenate contaminated soil

    Tang, Yinqi, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 268 p.

    Research output: Book/Report › Ph.D. thesis › Research

  88. Published

    Impacts of biochar materials on copper speciation, bioavailability, and toxicity in chromated copper arsenate polluted soil

    Tang, Yinqi, Wang, Chen, Holm, Peter Engelund, Hansen, Hans Chr. Bruun & Brandt, Kristian Koefoed, 2023, In: Journal of Hazardous Materials. 459, 14 p., 132067.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Pelagic food web processes in an oligotrophic lake

    Søndergaard, M., Riemann, B., Jensen, L. M., Jørgensen, Niels O. G., Bjørnsen, P. K., Olesen, Michael, Larsen, J. B., Geertz-Hensen, O., Hansen, J., Christoffersen, Kirsten Seestern, Jespersen, Anne, Andersen, F. & Bosselmann, S., Jul 1988, In: Hydrobiologia. 164, 3, p. 271-286 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds

    Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    The Efficacy of Faecal Microbiota Transplant and Rectal Bacteriotherapy in Patients with Recurrent Clostridioides difficile Infection: A Retrospective Cohort Study.

    Svensson, C. K., Cold, F., Ribberholt, I., Zangenberg, M., Mirsepasi-Lauridsen, H. C., Petersen, Andreas Munk & Helms, Morten, 2022, In: Cells. 11, 20, 12 p., 3272.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Influence of Environmental Stressors on the Physiology of Pollutant Degrading Bacteria: From the Test Tube to the Environment

    Svenningsen, N. B., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 133 p.

    Research output: Book/Report › Ph.D. thesis › Research

  93. Published

    The biofilm matrix polysaccharides cellulose and alginate both protect Pseudomonas putida mt-2 against reactive oxygen species generated under matric stress and copper exposure

    Svenningsen, N. B., Martinez-Garcia, E., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2018, In: Microbiology. 164, 6, p. 883-888 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

    Svenningsen, N. B., Watts-Williams, S. J., Joner, E. J., Battini, F., Efthymiou, A., Cruz Paredes, C., Nybroe, O. & Jakobsen, Iver, 2018, In: I S M E Journal. 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Nitrogen regulation of the xyl genes of Pseudomonas putida mt-2 propagates into a significant effect of nitrate on m-xylene mineralization in soil

    Svenningsen, N. B., Nicolaisen, Mette Haubjerg, Hansen, Hans Chr. Bruun, de Lorenzo, V. & Nybroe, O., 2016, In: Microbial Biotechnology. 9, 6, p. 814-823 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response

    Svenningsen, N. B., Pérez-Pantoja, D., Nikel, P. I., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2015, In: BMC Microbiology. 15, 11 p., 202.

    Research output: Contribution to journal › Journal article › Research › peer-review

  98. Published

    A revision of the history of the Colletotrichum acutatum species complex in the Nordic countries based on herbarium specimens.

    Sundelin, T., Strømeng, G. M., Gjærum, H. B., Amby, Daniel Buchvaldt, Ørstad, K., Jensen, Birgit, Lund, O. S. & Stensvand, A., 2015, In: F E M S Microbiology Letters. 362, 7 p., fnv130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Epigenetic effects of short-chain fatty acids from the large intestine on host cells

    Stein, R. A. & Riber, Leise, 2023, In: microLife. 4, 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

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