Microbial Ecology and Biotechnology

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  1. Published

    Biosynthesis of the antimicrobial cyclic lipopeptides nunamycin and nunapeptin by Pseudomonas fluorescens strain In5 is regulated by the LuxR-type transcriptional regulator NunF

    Hennessy, Rosanna Catherine, Phippen, C. B. W., Nielsen, K. F., Olsson, S. & Stougaard, P., 2017, In: MicrobiologyOpen. 6, 6, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Biotechnology for Plant Disease Control

    Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 321-329 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  3. Published

    Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community

    Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Botanicals, endophytes and plant growth-promoting rhizobacteria (PGPR) to control Black Sigatoka disease of banana in Uganda

    Mortensen, C. N., Collinge, David B., Jørgensen, Hans Jørgen Lyngs, Gumisiriya, C., Kumakech, A., Kateete, S. N. & Okori, P., 2013, Makerere University.

    Research output: Book/Report › Report › Research

  5. Published

    CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

    Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Cadmium accumulation in the rootless macrophyte Wolffia globosa and its potential for phytoremediation

    Xie, W., Huang, Q., Li, G., Rensing, C. G. T. & Zhu, Y., 2013, In: International Journal of Phytoremediation. 15, 4, p. 385-397 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Cadmium enhances conjugative plasmid transfer to a fresh water microbial community

    Pu, Q., Fan, X., Li, H., An, X., Lassen, Simon Bo & Su, J., 2021, In: Environmental Pollution. 268, Part B, 9 p., 115903.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Can phytohormones influence the composition of the endophytic microbiome in tomato roots?

    Manzotti, A., Bergna, A., Cernava, T., Berg, G., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2018, p. 218. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  9. Published

    Carbon mineralization and microbial activity in agricultural topsoil and subsoil as regulated by root nitrogen and recalcitrant carbon concentrations

    Liang, Z., Elsgaard, L., Nicolaisen, Mette Haubjerg, Lyhne-Kjærbye, A. & Olesen, J. E., 1 Dec 2018, In: Plant and Soil. 433, 1-2, p. 65-82

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Case study on depuration of RAS-produced pikeperch (Sander lucioperca) for removal of geosmin and other volatile organic compounds (VOCs) and its impact on sensory quality

    Podduturi, Raju, Petersen, Mikael Agerlin, Vestergaard, M., Hyldig, G. & Jørgensen, Niels O. G., 2021, In: Aquaculture. 530, 9 p., 735754.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil

    Gómez-Muñoz, B., Efthymiou, A., Dubey, M., Sølve, Jonathan, Nicolaisen, Mette Haubjerg, Jensen, Dan Funck, Nybroe, O. & Larsen, J., 2022, In: Fungal Biology. 126, 5, p. 356-365 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Centimeter-scale spatial variability in 2-methyl-4-chlorophenoxyacetic acid mineralization increases with depth in agricultural soil

    Badawi, N., Johnsen, A. R., Sørensen, Jan & Aamand, J., 2013, In: Journal of Environmental Quality. 42, 3, p. 683-689 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Cessation of grazing causes biodiversity loss and homogenization of soil food webs

    Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Challenges and opportunities for increasing the use of low-risk plant protection products in sustainable production. A review

    Lankinen, Å., Witzell, J., Aleklett, K., Furenhed, S., Green, K. K., Latz, Meike, Liljeroth, E., Larsson, R., Löfkvist, K., Meijer, J., Menkis, A., Ninkovic, V., Olson, Å. & Grenville-Briggs, L., 2024, In: Agronomy for Sustainable Development. 44, 22 p., 21.

    Research output: Contribution to journal › Review › Research › peer-review

  15. Published

    Changes in free amino acid content during naupliar development of the Calanoid copepod Acartia tonsa

    Rayner, T. A., Jørgensen, Niels O. G., Drillet, G. & Hansen, B. W., 2017, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 210, p. 1-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Characterization and finding the origin of off-flavor compounds in Nile tilapia cultured in net cages in hydroelectric reservoirs, São Paulo State, Brazil

    Podduturi, Raju, da Silva David, G., da Silva, R. J., Hyldig, G., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2023, In: Food Research International. 173, 15 p., 113375.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Characterization of five marine family 29 glycoside hydrolases reveals an α-l-fucosidase targeting specifically Fuc(α1,4)GlcNAc

    Schultz-Johansen, M., Stougaard, P., Svensson, B. & Teze, D., 2022, In: Glycobiology. 32, 6, p. 529-539

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production

    Schluter, L., David, G. S., Jørgensen, Niels O. G., Podduturi, Raju, Tucci, A., Dias, A. S. & da Silva, R. J., 2018, In: Aquaculture Environment Interactions. 10, p. 35-48 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5

    Kopejtka, K., Zeng, Y., Kaftan, D., Selyanin, V., Gardian, Z., Tomasch, J., Sommaruga, R. & Koblížek, M., 2021, In: Microorganisms. 9, 4, 13 p., 768.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Cloning and characterization of a pathogen-induced chitinase in Brassica napus

    Rasmussen, U., Bojsen, K. & Collinge, David B., 1 Oct 1992, In: Plant Molecular Biology. 20, 2, p. 277-287 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Cloning, purification and characterization of a thermostable beta-galactosidase from Bacillus licheniformis strain KG9

    Bekler, F. M., Stougaard, P., Guven, K., Guven, R. G. & Acer, O., 2015, In: Cellular and Molecular Biology. 61, 3, p. 71-78 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Clonostachys rosea to control plant diseases

    Jensen, Dan Funck, Dubey, M., Jensen, Birgit & Karlsson, M., 2021, Microbial bioprotectants for plant disease management. p. 429-471 45 p. (Burleigh Dodds series in agricultural science).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Co-effect of cadmium and iron oxide nanoparticles on plasmid-mediated conjugative transfer of antibiotic resistance genes: [incl. Corrigendum]

    Pu, Q., Fan, X. T., Sun, A. Q., Pan, T., Li, H., Lassen, Simon Bo, An, X. L. & Su, J. Q., 2021, In: Environment International. 152, 9 p., 106453.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Collaborations Between Microbes and those who Love Them

    Høyland-Kroghsbo, Nina Molin, 2023, In: Israel Journal of Chemistry. 63, 3 p., e202200082.

    Research output: Contribution to journal › Review › Research › peer-review

  25. Published

    Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue

    Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Community dispersal: Developing and applying a novel method to explore the dispersal potential of bacterial communities from environmental samples

    Krüger, U. S., 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  27. Published

    Compaction stimulates denitrification in an urban park soil using 15N tracing technique

    Li, S., Deng, H., Rensing, C. G. T. & Zhu, Y. G., 2014, In: Environmental Science and Pollution Research. 21, 5, p. 3783-3791 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes

    Bista, P. K., Pillai, D., Roy, C., Scaria, J. & Narayanan, S. K., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e00297-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture

    Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  30. Published

    Comparison of metals and tetracycline as selective agents for development of tetracycline resistant bacterial communities in agricultural soil

    Song, J., Rensing, C., Holm, Peter Engelund, Virta, M. & Brandt, Kristian Koefoed, 2017, In: Environmental Science & Technology (Washington). 51, 5, p. 3040-3047 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Competitive adsorption/desorption of tetracycline, oxytetracycline and chlortetracycline on two acid soils: stirred flow chamber experiments

    Fernandez Calviño, D., Bermudez-Couso, A., Arias-Estevez, M., Carlos Novoa-Munoz, J., Fernandez-Sanjurjo, M. J., Alvarez-Rodriguez, E. & Nunez-Delgado, A., 2015, In: Chemosphere. 134, p. 361-366 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment

    Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)

    Garcia-Lemos, A. M., Hennessy, Rosanna Catherine, Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology Resource Announcements. 10, 8, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Complete Genome Sequence of Sphingopyxis sp. Strain PET50, a Potential Polyethylene Terephthalate (PET)-Degrading Bacterium Isolated from Compost

    Lago-Maciel, A., Nielsen, Tue Kjærgaard, Jensen, K., Nicolaisen, Mette Haubjerg & Hennessy, Rosanna Catherine, 2023, In: Microbiology Resource Announcements. 12, 1, 2 p., e0097022.

    Research output: Contribution to journal › Journal article › Research

  35. Published

    Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment

    Bak, Frederik, Henriksen, Alexander Pil, Nielsen, Tue Kjærgaard & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology resource announcements. 10, 44, 2 p., e0075421.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18

    Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2

    Sher, S., Rehman, A., Hansen, Lars Hestbjerg & Nielsen, Tue Kjærgaard, 2019, In: Microbiology Resource Announcements. 8, 31, 2 p., e00531-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

    Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom

    Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Computational Tools for the Analysis of Uncultivated Phage Genomes

    Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.

    Research output: Contribution to journal › Review › Research › peer-review

  41. Published

    Conidia-based fluorescence quantification of Streptomyces

    Podduturi, Raju & Jørgensen, Niels O. G., 2018, In: Journal of Microbiological Methods. 153, p. 104-107 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Constructing and screening a metagenomic library of a cold and alkaline extreme environment

    Glaring, M. A., Vester, J. K. & Stougaard, P., 2017, Metagenomics. Streit, W. R. & Daniel, R. (eds.). Springer, p. 43-55 13 p. (Methods in Molecular Biology, Vol. 1539).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  43. Published

    Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS

    Podduturi, Raju, Clausen, N., Petersen, N. B., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2018, Flavour Science: Proceedings of the XV Weurman Flavour Research Symposium. Siegmund, B. & Leitner, E. (eds.). Verlag der Technische Universität Graz, p. 475-478 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  44. Published

    Contribution of the seed microbiome to weed management

    Müller-Stöver, Dorette Sophie, Nybroe, O., Baraibar, B., Loddo, D., Eizenberg, H., French, K., Sønderskov, M., Neve, Paul, Peltzer, D. A., Maczey, N. & Christensen, Svend, 2016, In: Weed Research. 56, 5, p. 335-339 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure

    Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Copper content and distribution in vineyard soils from Betanzos (A Coruña, Spain)

    Gómez-Armesto, A., Carballeira-Díaz, J., Pérez-Rodríguez, P., Fernandez Calviño, D., Arias-Estévez, M., Nóvoa-Muñoz, J. C., Álvarez-Rodríguez, E., Fernández-Sanjurjo, M. J. & Núñez-Delgado, A., 2015, In: Spanish Journal of Soil Science. 5, 1, p. 60-71 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Copper tolerance mechanisms of Mesorhizobium amorphae and its role in aiding phytostabilization by Robinia pseudoacacia in copper contaminated soil

    Hao, X., Xie, P., Zhu, Y., Taghavi, S., Wei, G. & Rensing, C. G. T., 2015, In: Environmental Science & Technology (Washington). 49, 4, p. 2328-2340 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, Lars Hestbjerg, Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, Jakob Nybo, Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, Simon, Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, Søren Johannes, Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance

    Larsson, D. G. J., Andremont, A., Bengtsson-Palme, J., Brandt, K. K., Husman, A. M. D. R., Fagerstedt, P., Fick, J., Flach, C-F., Gaze, W. H., Kuroda, M., Kvint, K., Laxminarayan, R., Manaia, C. M., Nielsen, K. M., Plant, L., Ploy, M-C., Segovia, C., Simonet, P., Smalla, K., Snape, J. & 6 others, Topp, E., van Hengel, A. J., Verner-Jeffreys, D. W., Virta, M. P. J., Wellington, E. M. & Wernersson, A., 2018, In: Environment International. 117, p. 132-138

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Cross-Frontier Communication: Phytohormone Functions at the Plant-Microbe Interface and Beyond

    Berger, S., Van Wees, S. C. M., Nybroe, O. & Grosskinsky, D. K., 2020, In: Frontiers in Plant Science. 11, 2 p., 386.

    Research output: Contribution to journal › Editorial › Research

  51. Published

    Cu retention in an acid soil amended with perlite winery waste

    Rodríguez-Salgado, I., Pérez-Rodríguez, P., Gómez-Armesto, A., Nóvoa-Muñoz, J. C., Arias-Estévez, M. & Fernandez Calviño, D., 2016, In: Environmental science and pollution research international. 23, 4, p. 3789-3798 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Cyanobacteria-mediated arsenic redox dynamics is regulated by phosphorus in aquatic environments

    Zhang, S., Rensing, C. G. T. & Zhu, Y., 2014, In: Environmental Science & Technology (Washington). 48, 2, p. 994-1000 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers

    Peixoto, L., Olesen, J. E., Elsgaard, L., Lønne Enggrob, K., C. Banfield, C., Dippold, M. A., Nicolaisen, Mette Haubjerg, Bak, Frederik, Zang, H., Dresbøll, Dorte Bodin, Thorup-Kristensen, Kristian & Rasmussen, J., 2022, In: Scientific Reports. 12, 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  54. Published

    Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil

    Bak, Frederik, Lyhne-Kjærbye, A., Tardif, S., Dresbøll, Dorte Bodin, Nybroe, O. & Nicolaisen, Mette Haubjerg, 2022, In: Phytobiomes Journal. 6, 3, p. 236-246 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  55. Published

    Defense-related genes expressed in Norway spruce roots after infection with the root rot pathogen Ceratobasidium bicorne (anamorph: Rhizoctonia sp.)

    Jøhnk, N., Hietala, A. M., Fossdal, C. G., Collinge, David B. & Newman, Mari-Anne, 1 Jan 2005, In: Tree Physiology. 25, 12, p. 1533-1543 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  56. Published

    Defining the twig fungal communities of Fraxinus species and Fraxinus excelsior genotypes with differences in susceptibility to ash dieback

    Kosawang, Chatchai, Sørensen, Helle, Kjær, Erik Dahl, Dilokpimol, A., McKinney, L. V., Collinge, David B. & Nielsen, Lene Rostgaard, 2019, In: Fungal Ecology. 42, 8 p., 100859.

    Research output: Contribution to journal › Journal article › Research › peer-review

  57. Published

    Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software

    Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  58. Published

    Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs

    Kot, Witold, Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, Alexander Byth, Moineau, S., Swairjo, M. A. & Hansen, Lars Hestbjerg, 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  59. Published

    Detection of saxitoxin-producing cyanobacteria in subtropical Brazilian drinking water supply reservoir by quantitative PCR

    De Almeida Bispo Moraes, M., Rodrigues, R. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., May 2019.

    Research output: Contribution to conference › Poster › Research › peer-review

  60. Published

    Development and Application of High-throughput qPCR based Chips to study Arsenic Biotransformation and Antibiotic Resistance Genes in Contaminated Environments

    Zhao, Y., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  61. Published

    Development of a high-throughput chip technology to monitor water quality, off-flavour and diseases in recirculated aquaculture systems (RAS)

    Li, H., Larsen, H., Heegaard, P., Jørgensen, Niels O. G. & Jørgensen, Louise von Gersdorff, 2023, p. 40. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  62. Published

    Diagnosis of Plant Diseases

    Munk, Lisa, Collinge, David B., Djurle, A. & Tronsmo, A. M., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 164-181 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  63. Published

    Dietary non-starch polysaccharides impair immunity to enteric nematode infection

    Valente, Angela Hørdum, Jensen, K. M. R., Myhill, Laura Jessica, Zhu, L., Mentzel, Caroline M. Junker, Krych, Lukasz, Simonsen, H. T., Castro-Mejía, J. L., Gobbi, Alex, Bach Knudsen, K. E., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2023, In: BMC Biology. 21, 16 p., 138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  64. Published

    Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil

    Zhang, Y., Hao, X., Garcia-Lemos, A. M., Nunes, I., Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Applied and Environmental Microbiology. 86, 10, 16 p., ARTN e02969-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  65. Published

    Different sensitivity of a panel of Rhizophagus isolates to AMF-suppressive soils

    Cruz-Paredes, C., Jakobsen, Iver & Nybroe, O., 2020, In: Applied Soil Ecology. 155, 5 p., 103662.

    Research output: Contribution to journal › Journal article › Research › peer-review

  66. Published

    Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere

    Bornø, Marie Louise, Zervas, A., Bak, Frederik, Merl, T., Koren, K., Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Müller-Stöver, Dorette Sophie, 2023, In: Science of the Total Environment. 905, 13 p., 166888.

    Research output: Contribution to journal › Journal article › Research › peer-review

  67. Published

    Digested wheat gluten inhibits binding between leptin and its receptor

    Jonsson, T., Memon, A. A., Sundquist, K., Sundquist, J., Olsson, S., Nalla, A., Bauer, M. & Linse, S., 2015, In: B M C Biochemistry. 16, 5 p., 3.

    Research output: Contribution to journal › Journal article › Research › peer-review

  68. Published

    Digging Deeper for Agricultural Resources, the Value of Deep Rooting

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E., Crews, T. E., Hinsinger, P., Kirkegaard, J., Pierret, A. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 406-417

    Research output: Contribution to journal › Review › Research › peer-review

  69. Published

    Discovery and screening of novel metagenome-derived GH107 enzymes targeting sulfated fucans from brown algae

    Schultz-Johansen, M., Cueff, M., Hardouin, K., Jam, M., Larocque, R., Glaring, M. A., Herve, C., Czjzek, M. & Stougaard, P., 2018, In: FEBS Journal. 285, 22, p. 4281-4295

    Research output: Contribution to journal › Journal article › Research › peer-review

  70. Published

    Discovery of a bacterial gene cluster for deglycosylation of the toxic potato steroidal glycoalkaloids α-chaconine and α-solanine

    Hennessy, Rosanna Catherine, Nielsen, S. D., Greve-Poulsen, M., Larsen, L. B., Bandsholm, O. & Stougaard, P., 2020, In: Journal of Agricultural and Food Chemistry. 68, 5, p. 1390-1396 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  71. Published

    Discovery of novel algae-degrading enzymes from marine bacteria

    Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine & Stougaard, P., 2017.

    Research output: Contribution to conference › Poster › Research

  72. Published

    Discovery of novel enzymes with industrial potential from a cold and alkaline environment by a combination of functional metagenomics and culturing

    Vester, J. K., Glaring, M. A. & Stougaard, P., 2014, In: Microbial Cell Factories. 13, 14 p., 72.

    Research output: Contribution to journal › Journal article › Research › peer-review

  73. Published

    Disease Management Strategies Using Host Resistance

    Munk, Lisa, Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 307-320 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  74. Published

    Disentangling the abiotic and biotic components of AMF suppressive soils

    Cruz-Paredes, C., Diera, T., Davey, M., Rieckmann, Maria Monrad, Christensen, P., Dela Cruz, Majbrit, Laursen, Kristian Holst, Joner, E. J., Christensen, Jan H., Nybroe, O. & Jakobsen, Iver, 2021, In: Soil Biology and Biochemistry. 159, 11 p., 108305.

    Research output: Contribution to journal › Journal article › Research › peer-review

  75. Published

    Dissecting the role of viruses in marine nutrient cycling: bacterial uptake of D- and L-amino acids released by viral lysis

    Shelford, E. J., Jørgensen, Niels O. G., Rasmussen, S., Suttle, C. A. & Middelboe, Mathias, 2014, In: Aquatic Microbial Ecology. 73, 3, p. 235-243 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  76. Published

    Dissipation of pterosin B in acid soils - tracking the fate of the bracken fern carcinogen ptaquiloside

    Skourti-Stathaki, E., Clauson-Kaas, F., Brandt, Kristian Koefoed, Rasmussen, L. H. & Hansen, Hans Chr. Bruun, 2016, In: Chemosphere. 165, p. 453-459 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  77. Published

    Distribution and ecological impact of artemisinin derived from Artemisia annua L. in an agricultural ecosystem

    Herrmann, S., Jessing, K. K., Jørgensen, Niels O. G., Cedergreen, Nina, Kandeler, E. & Strobel, Bjarne W., 2013, In: Soil Biology & Biochemistry. 57, p. 164-172 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  78. Published

    Distribution of arsenic resistance genes in prokaryotes

    Ben Fekih, I., Zhang, C., Li, Y. P., Zhao, Y., Alwathnani, H. A., Saquib, Q., Rensing, C. & Cervantes, C., 2018, In: Frontiers in Microbiology. 9, p. 1-11 2473.

    Research output: Contribution to journal › Review › Research › peer-review

  79. Published

    Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties

    Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Bak, Frederik, Guan, Ying, Herms, Courtney Horn, Molina Zamudio, Kitzia Yashvelt, Thybo Ganzhorn, D., Müller-Stöver, Dorette Sophie, Ahmad, J., Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology resource announcements. 11, 5, 3 p., e0022222.

    Research output: Contribution to journal › Journal article › Research › peer-review

  80. Published

    Do contaminants compromise the use of recycled nutrients in organic agriculture? A review and synthesis of current knowledge on contaminant concentrations, fate in the environment and risk assessment

    Bünemann, E. K., Reimer, M., Smolders, E., Smith, S. R., Bigalke, M., Palmqvist, A., Brandt, Kristian Koefoed, Möller, K., Harder, R., Hermann, L., Speiser, B., Oudshoorn, F., Løes, A. K. & Magid, Jakob, 2024, In: Science of the Total Environment. 912, 18 p., 168901.

    Research output: Contribution to journal › Review › Research › peer-review

  81. Published

    Does Pseudomonas produce terpenes? Characterization of terpene synthases from Pseudomonas

    Podduturi, Raju, Hennessy, Rosanna Catherine, Petersen, Mikael Agerlin, Stougaard, P. & Jørgensen, Niels O. G., 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  82. Published

    Does regulation hold the key to optimizing lipopeptide production in Pseudomonas for biotechnology?

    Zhou, L., Höfte, M. & Hennessy, Rosanna Catherine, 2024, In: Frontiers in Bioengineering and Biotechnology. 12, 28 p., 1363183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  83. Published

    Donor-dependent fecal microbiota transplantation efficacy against necrotizing enterocolitis in preterm pigs

    Hui, Y., Vestergaard, G., Deng, Ling, Kot, Witold, Thymann, Thomas, Brunse, Anders & Nielsen, Dennis Sandris, 2022, In: npj Biofilms and Microbiomes. 8, 1, 12 p., 48.

    Research output: Contribution to journal › Journal article › Research › peer-review

  84. Published

    Draft Genome Sequence of Se(IV)-Reducing Bacterium Pseudomonas migulae ES3-33

    Li, Xuan Ji, Kot, W., Wang, D., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C., 2015, In: Genome Announcements. 3, 3, p. 1-2 2 p., e00406-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  85. Published

    Draft Genome Sequence of a Novel Serratia sp. Strain with Antifungal Activity

    Dichmann, S. I., Park, B., Pathiraja, D., Choi, I., Stougaard, P. & Hennessy, Rosanna Catherine, 2018, In: Microbiology resource announcements. 7, 22, p. 1-2 e01340-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  86. Published

    Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds

    Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  87. Published

    Draft Genome Sequences of Two Glycoalkaloid-Degrading Arthrobacter Strains Isolated from Green Potato Peel

    Hennessy, Rosanna Catherine, Park, B., Pathiraja, D., Choi, I., Schultz-Johansen, M. & Stougaard, P., 18 Apr 2019, In: Microbiology Resource Announcements. 8, 16, p. 1-2 8:e00226-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  88. Published

    Draft genome sequence of Pseudomonas sp. strain in5 isolated from a Greenlandic disease suppressive soil with potent antimicrobial activity

    Hennessy, Rosanna Catherine, Glaring, M. A., Michelsen, C. F., Olsson, S. & Stougaard, P., 2015, In: Genome Announcements. 3, 6, 1 p., e01251-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  89. Published

    Draft genome sequence of a novel marine bacterium, Paraglaciecola sp. strain S66, with hydrolytic activity against seaweed polysaccharides

    Schultz-Johansen, M., Glaring, M. A., Bech, P. K. & Stougaard, P., 2016, In: Genome Announcements. 4, 2, e00304-16.

    Research output: Contribution to journal › Journal article › Research › peer-review

  90. Published

    Draft genome sequence of the psychrophilic and alkaliphilic Rhodonellum psychrophilum strain GCM71T

    Hauptmann, A. L., Glaring, M. A., Hallin, P. F., Priemé, Anders & Stougaard, P., 2013, In: Genome Announcements. 1, 6, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  91. Published

    Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments

    Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Hallin, P. F., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2015, In: Genome Announcements. 3, 3, 2 p., e00585-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  92. Published

    Dual effects of Metarhizium spp. and Clonostachys rosea against an insect and a seed-borne pathogen in wheat

    Keyser, C. A., Jensen, Birgit & Meyling, Nicolai Vitt, 2016, In: Pest Management Science. 72, 3, p. 517-526 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  93. Published

    Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system

    Lukassen, M. B., Podduturi, Raju, Rohaan, B., Jørgensen, Niels O. G. & Nielsen, J. L., 1 Feb 2019, In: Aquaculture. 500, p. 170-177 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  94. Published

    Dysbiosis in the Gut Microbiota of Soil Fauna Explains the Toxicity of Tire Tread Particles

    Ding, J., Zhu, D., Wang, H., Lassen, Simon Bo, Chen, Q., Li, G., Lv, M. & Zhu, Y., 2020, In: Environmental Science & Technology. 54, 12, p. 7450-7460 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  95. Published

    Early induction of new mRNAs accompanies the resistance reaction of barley to the wheat pathogen, Erysiphe graminis f.sp. tritici

    Gregersen, P. L., Collinge, David B. & Smedegaard-Petersen, V., 1 Jan 1990, In: Physiological and Molecular Plant Pathology. 36, 6, p. 471-481 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  96. Published

    Earthworm gut: An overlooked niche for anaerobic ammonium oxidation in agricultural soil

    Li, H., Yang, X., Wang, J., Zhou, G., Zhang, Y., Lassen, Simon Bo, Zhu, Y. & Su, J., 2021, In: Science of the Total Environment. 752, 9 p., 141874.

    Research output: Contribution to journal › Journal article › Research › peer-review

  97. Published

    Ecotoxicological assessment of antibiotics: a call for improved consideration of microorganisms

    Brandt, Kristian Koefoed, Amézquita, A., Backhaus, T., Boxall, A., Coors, A., Heberer, T., Lawrence, J. R., Lazorchak, J., Schönfeld, J., Snape, J. R., Zhu, Y. & Topp, E., 2015, In: Environment International. 85, p. 189-205 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  98. Published

    Ecotoxicological assessment of propiconazole using soil bacterial and fungal growth assays

    Fernandez Calviño, D., Rousk, J., Baath, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2017, In: Agriculture, Ecosystems & Environment. 115, p. 27-30

    Research output: Contribution to journal › Journal article › Research › peer-review

  99. Published

    Effect of crushed mussel shell addition on bacterial growth in acid polluted soils

    Fernandez Calviño, D., Garrido-Rodríguez, B., Arias-Estévez, M., Díaz-Raviña, M., Álvarez-Rodríguez, E., Fernández-Sanjurjo, M. J. & Nuñez-Delgado, A., 2015, In: Applied Soil Ecology. 85, p. 65-68 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  100. Published

    Effect of gluten-free diet and antibiotics on murine gut microbiota and immune response to tetanus vaccination

    Kihl, Pernille, Krych, Lukasz, Deng, Ling, Hansen, Lars Hestbjerg, Buschard, K., Skov, Søren, Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: Plos One. 17, 4, 21 p., e0266719.

    Research output: Contribution to journal › Journal article › Research › peer-review

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