- 2020
- Published
Seed inoculation with Penicillium bilaiae and Bacillus simplex affects the nutrient status of winter wheat
Hansen, Veronika, Bonnichsen, L., Nunes, I., Sexlinger, K., Lopez, S. R., van der Bom, Frederik, Nybroe, O., Nicolaisen, Mette Haubjerg & Jensen, Lars Stoumann, 2020, In: Biology and Fertility of Soils. 56, 1, p. 97-109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selection of fungal endophytes with biocontrol potential against Fusarium head blight in wheat
Rojas, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Esteban, P., Ding, Y. & Collinge, David B., 2020, In: Biological Control. 144, 9 p., 104222.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial and temporal variability of cyanobacteria in two subtropical reservoirs: community composition, molecular and cyanotoxin analyses
De Almeida Bispo Moraes, M., 2020, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 128 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin
Hao, X., Zhu, Y., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2020, In: Frontiers in Microbiology. 10, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements
Browne, Patrick Denis, Kot, Witold, Jørgensen, T. S. & Hansen, Lars Hestbjerg, 2020, Horizontal Gene Transfer: Methods and Protocols. Cruz, F. D. L. (ed.). Humana Press, p. 253-264 (Methods in Molecular Biology, Vol. 2075).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The environmental occurrence of Pseudomonas aeruginosa
Crone, S., Vives-Flórez, M., Kvich, Lasse Andersson, Saunders, A. M., Malone, M., Nicolaisen, Mette Haubjerg, Martínez-García, E., Rojas-Acosta, C., Catalina Gomez-Puerto, M., Calum, Henrik Pierre, Whiteley, M., Kolter, R. & Bjarnsholt, Thomas, 2020, In: APMIS. 128, 3, p. 220-231Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transglycosylating β-d-galactosidase and α-l-fucosidase from Paenibacillus sp. 3179 from a hot spring in East Greenland
Thøgersen, M. S., Christensen, S. J., Jepsen, M., Pedersen, L. H. & Stougaard, P., 2020, In: MicrobiologyOpen. 9, 3, 15 p., e980.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae
Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Neve, H., Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 251-259 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology
Hylling, O., Carstens, Alexander Byth, Kot, Witold, Hansen, M., Neve, H., Franz, C. M. A. P., Johansen, A., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development
Garcia-Lemos, A. M., Gobbi, Alex, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 17 p., 198.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Plant Pathogens
Perssona, P., Pirhonen, M. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 89-106 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Biological Control of Plant Diseases
Tronsmo, A., Collinge, David B., Alabouvette, C. & Jensen, Dan Funck, 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 289-306 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Biotechnology for Plant Disease Control
Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 321-329 9 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Diagnosis of Plant Diseases
Munk, Lisa, Collinge, David B., Djurle, A. & Tronsmo, A. M., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 164-181 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Disease Management Strategies Using Host Resistance
Munk, Lisa, Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 307-320 14 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Geosmin fluctuations and potential hotspots for elevated levels in recirculated aquaculture system (RAS): a case study from pikeperch (Stizostedion lucioperca) production in Denmark
Podduturi, Raju, Petersen, Mikael Agerlin, Vestergaard, M. & Jørgensen, Niels O. G., 1 Jan 2020, In: Aquaculture. 514, p. 1-8 734501.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
History of plant pathology.
Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 11-18 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Defence Against Pathogens
Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 205-215 11 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Health Legislation
Tronsmo, A. M., Collinge, David B. & Yuen, J., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 366-376 11 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Pathology and Plant Diseases
Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 1-439 439 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Race Specificity and Plant Immunity
Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 216-233 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The Disease Cycle and Lifestyles
Tronsmo, A. M., Munk, Lisa, Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 19-36 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
What is a Plant Disease?
Tronsmo, A. M., Munk, Lisa, Djurle, A., Yuen, J. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 3-10 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Association of Dietary Patterns with Testicular Function in Young Danish Men
Nassan, F. L., Jensen, T. K., Priskorn, L., Halldorsson, T. I., Chavarro, J. E. & Jørgensen, Niels O. G., 21 Feb 2020, In: JAMA Network Open. 3, 2, 16 p., e1921610.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Serratia inhibens sp. nov., a new antifungal species isolated from potato (Solanum tuberosum)
Hennessy, Rosanna Catherine, Dichmann, S. I., Martens, Helle Jakobe, Zervas, A. & Stougaard, P., 17 Jun 2020, In: International Journal of Systematic and Evolutionary Microbiology. 70, 7, p. 4204-4211 8 p., 004270.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T
Pathiraja, D., Christiansen, L., Park, B., Schultz-Johansen, M., Bang, G., Stougaard, P. & Choi, I. G., 2021, In: Applied and Environmental Microbiology. 87, 12, 19 p., e00230-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A non-antifungal rhizobacterium stimulates plant immunity to protect tomato and Kalanchoe against Fusarium oxysporum and wheat against Zymoseptoria tritici
Madriz Ordenana, Kenneth, Pazarlar, Sercan, Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Nielsen, K. L., Zhang, Y. & Thordal-Christensen, Hans, 2021. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
A novel microcosm to identify inherently competitive microorganisms with the ability to mineralize phytate in solum
Pittroff, S. M., Olsson, S., Doolette, A., Greiner, R., Richardson, A. E. & Nicolaisen, Mette Haubjerg, 2021, In: Soil Ecology Letters. 3, p. 367-382Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel transcription factor UvCGBP1 regulates development and virulence of rice false smut fungus Ustilaginoidea virens
Chen, X., Li, P., Liu, H., Chen, X., Huang, J., Luo, C., Li, G., Hsiang, T., Collinge, David B. & Zheng, L., 2021, In: Virulence. 12, 1, p. 1563-1579 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol
Ntana, F., Bhat, W. W., Johnson, S. R., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Jensen, Birgit & Hamberger, B., 2021, In: Biomolecules. 11, 6, 16 p., 898.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Administration of bovine milk oligosaccharide to weaning gnotobiotic mice inoculated with a simplified infant type microbiota
Jakobsen, L. M. A., Sundekilde, U. K., Andersen, H. J., Kot, Witold, Mejia, J. L. C., Nielsen, Dennis Sandris, Hansen, Axel Kornerup & Bertram, H. C., 2021, In: Microorganisms. 9, 5, 1003.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Oligosaccharide Rich Diet Increases Akkermansia spp. Bacteria in the Equine Microbiota
Lindenberg, F. C., Lützhøft, Ditte Olsen, Krych, Lukasz, Fielden, J., Kot, Witold, Frøkiær, Hanne, van Galen, G., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2021, In: Frontiers in Microbiology. 12, 666039.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistome in the livestock and aquaculture industries: Status and solutions
Zhao, Y., Yang, Q. E., Zhou, X., Wang, F., Muurinen, J., Virta, M. P., Brandt, Kristian Koefoed & Zhu, Y., 2021, In: Critical Reviews in Environmental Science and Technology. 51, 19, p. 2159-2196 38 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Application of wood ash leads to strong vertical gradients in soil pH changing prokaryotic community structure in forest top soil
Bang-Andreasen, T., Peltre, M., Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Ingerslev, Morten, Rønn, Regin, Jacobsen, C. S. & Kjøller, Rasmus, 2021, In: Scientific Reports. 11, 10 p., 742.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Chromosomes Under Changing Environmental Conditions: Editorial
Glinkowska, M., Waldminghaus, T. & Riber, Leise, 2021, In: Frontiers in Microbiology. 12, 3 p., 633466.Research output: Contribution to journal › Editorial › Research
- Published
Cadmium enhances conjugative plasmid transfer to a fresh water microbial community
Pu, Q., Fan, X., Li, H., An, X., Lassen, Simon Bo & Su, J., 2021, In: Environmental Pollution. 268, Part B, 9 p., 115903.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Case study on depuration of RAS-produced pikeperch (Sander lucioperca) for removal of geosmin and other volatile organic compounds (VOCs) and its impact on sensory quality
Podduturi, Raju, Petersen, Mikael Agerlin, Vestergaard, M., Hyldig, G. & Jørgensen, Niels O. G., 2021, In: Aquaculture. 530, 9 p., 735754.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5
Kopejtka, K., Zeng, Y., Kaftan, D., Selyanin, V., Gardian, Z., Tomasch, J., Sommaruga, R. & Koblížek, M., 2021, In: Microorganisms. 9, 4, 13 p., 768.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Clonostachys rosea to control plant diseases
Jensen, Dan Funck, Dubey, M., Jensen, Birgit & Karlsson, M., 2021, Microbial bioprotectants for plant disease management. p. 429-471 45 p. (Burleigh Dodds series in agricultural science).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Co-effect of cadmium and iron oxide nanoparticles on plasmid-mediated conjugative transfer of antibiotic resistance genes: [incl. Corrigendum]
Pu, Q., Fan, X. T., Sun, A. Q., Pan, T., Li, H., Lassen, Simon Bo, An, X. L. & Su, J. Q., 2021, In: Environment International. 152, 9 p., 106453.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)
Garcia-Lemos, A. M., Hennessy, Rosanna Catherine, Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology Resource Announcements. 10, 8, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment
Bak, Frederik, Henriksen, Alexander Pil, Nielsen, Tue Kjærgaard & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology resource announcements. 10, 44, 2 p., e0075421.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18
Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Disentangling the abiotic and biotic components of AMF suppressive soils
Cruz-Paredes, C., Diera, T., Davey, M., Rieckmann, Maria Monrad, Christensen, P., Dela Cruz, Majbrit, Laursen, Kristian Holst, Joner, E. J., Christensen, Jan H., Nybroe, O. & Jakobsen, Iver, 2021, In: Soil Biology and Biochemistry. 159, 11 p., 108305.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Earthworm gut: An overlooked niche for anaerobic ammonium oxidation in agricultural soil
Li, H., Yang, X., Wang, J., Zhou, G., Zhang, Y., Lassen, Simon Bo, Zhu, Y. & Su, J., 2021, In: Science of the Total Environment. 752, 9 p., 141874.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Emergence and Co-selection of Antibiotic Resistance in the Environment
Lassen, Simon Bo, 2021, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 243 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Browne, Patrick Denis, Cold, F., Petersen, Andreas Munk, Halkjær, S. I., Christensen, A. H., Günther, S. & Hansen, Lars Hestbjerg, 2021, In: Gut Microbes. 13, 1, 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae
Olsen, Nikoline S., Nielsen, K. J., Plöger, M., Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Archives of Virology. 166, p. 593-599 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
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2508
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
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Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
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Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors
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