Microbial Ecology and Biotechnology

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  1. 2019
  2. Published

    On the hunt for the alternate host of Hemileia vastatrix

    Koutouleas, Tina, Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit, Lillesø, Jens-Peter Barnekow, Junge, A. & Ræbild, Anders, 2019, In: Ecology and Evolution. 9, 23, p. 13619-13631 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Plant-endophyte interactions as a source of bioactive compounds: Regulation of specialised metabolism during tomato and Serendipita indica interaction

    Ntana, F., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Responses to soil pH gradients of inorganic phosphate solubilizing bacteria community

    Zheng, B. X., Zhang, D. P., Wang, Y., Hao, X., Wadaan, M. A. M., Hozzein, W. N., Peñuelas, J., Zhu, Y. G. & Yang, X. R., 2019, In: Scientific Reports. 9, p. 1-8 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Searching for novel fungal biological control agents for plant disease control among endophytes

    Collinge, David B., Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Manzotti, A., Ntana, F., Rojas Tayo, E. C. & Jensen, Birgit, 2019, Endophytes for a growing world. Hodkinson, T., Doohan, F., Saunders, M. & Murphy, B. (eds.). Cambridge University Press, p. 25-51 17 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  6. Published

    Sepsis-related Organ Failure Assessment Score is a strong predictor of survival in acute-on-chronic liver failure

    Cold, F., Schiødt, Frank Vinholt, Pott, Frank Christian, Strandkjær, N. & Christensen, E., 2019, In: Danish Medical Journal. 66, 8, 5 p., A5557.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Soil bacteria and protists show different sensitivity to polycyclic aromatic hydrocarbons at controlled chemical activity

    Winding, A., Modrzyński, J. J., Christensen, Jan H., Brandt, Kristian Koefoed & Mayer, P., 2019, In: FEMS Microbiology Letters. 366, 17, fnz214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Soil – Microbiome – Contaminant Interactions: Pre and Post Remediation of Chromated Copper Arsenate Contaminated Soil

    Tardif, S., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  9. Published

    Testing the yield of a pilot-scale bubble column photobioreactor for cultivation of the microalga Rhodomonas salina as feed for intensive calanoid copepod cultures

    Vu, M. T. T., Jepsen, P. M., Jørgensen, Niels O. G., Hansen, B. W. & Nielsen, S. L., 2019, In: Aquaculture Research. 50, 1, p. 63-71 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Use of endophytic fungi as biocontrol agents of cereal diseases

    Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Latz, Meike, Rojas Tayo, E. C. & Jensen, Birgit, 2019, WMF meets IUPAC 2019: Abstracts of lectures and posters. The World Mycotoxin Forum, p. 31 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  11. Published

    Evaluation of pH-Dependent Metal Speciation Artifacts in Whole-Cell Bioreporter Analysis

    Hansen, M. G., Marcussen, H., Holm, Peter Engelund & Brandt, Kristian Koefoed, 1 Jan 2019, In: Journal of Environmental Quality. 48, 1, p. 199-204 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Fertilising effect of sewage sludge ash inoculated with the phosphate-solubilising fungus Penicillium bilaiae under semi-field conditions

    Raymond, Nelly Sophie, Jensen, Lars Stoumann, van der Bom, Frederik, Nicolaisen, Mette Haubjerg & Müller-Stöver, Dorette Sophie, 1 Jan 2019, In: Biology and Fertility of Soils. 55, 1, p. 43-51 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    AsChip: A High-Throughput qPCR Chip for Comprehensive Profiling of Genes Linked to Microbial Cycling of Arsenic

    Zhao, Y., Su, J. Q., Ye, J., Rensing, C., Tardif, S., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Jan 2019, In: Environmental Science and Technology. 53, 2, p. 798-807 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system

    Lukassen, M. B., Podduturi, Raju, Rohaan, B., Jørgensen, Niels O. G. & Nielsen, J. L., 1 Feb 2019, In: Aquaculture. 500, p. 170-177 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Linking bioavailability and toxicity changes of complex chemicals mixture to support decision making for remediation endpoint of contaminated soils

    Cipullo, S., Negrin, I., Claveau, L., Snapir, B., Tardif, S., Pulleyblank, C., Prpich, G., Campo, P. & Coulon, F., 10 Feb 2019, In: Science of the Total Environment. 650, Part 2, p. 2150-2163 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Factors governing the solid phase distribution of Cr, Cu and As in contaminated soil after 40 years of ageing

    Tardif, S., Cipullo, S., Sø, H. U., Wragg, J., Holm, Peter Engelund, Coulon, F., Brandt, Kristian Koefoed & Cave, M., 20 Feb 2019, In: Science of the Total Environment. 652, p. 744-754

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Suppression of arbuscular mycorrhizal fungal activity in a diverse collection of non-cultivated soils

    Cruz Paredes, C., Svenningsen, N. B., Nybroe, O., Kjøller, Rasmus, Frøslev, Tobias Guldberg & Jakobsen, Iver, Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-10 fiz020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile

    Bak, Frederik, Nybroe, O., Zheng, B., Badawi, N., Hao, X., Nicolaisen, Mette Haubjerg & Aamand, J., 1 Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-12 fiz008.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Assessment of biochar and zero-valent iron for in-situ remediation of chromated copper arsenate contaminated soil

    Frick, H., Tardif, S., Kandeler, E., Holm, Peter Engelund & Brandt, Kristian Koefoed, 10 Mar 2019, In: Science of the Total Environment. 655, p. 414-422 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile

    Krüger, U. S., Dechesne, A., Bak, Frederik, Badawi, N., Nybroe, O. & Aamand, J., 15 Mar 2019, In: Applied and Environmental Microbiology. 85, 6, p. 1-16 e02658-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Evidence for co-selection of antibiotic resistance genes and mobile genetic elements in metal polluted urban soils

    Zhao, Y., Cocerva, T., Cox, S., Tardif, S., Su, J. Q., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Mar 2019, In: Science of the Total Environment. 656, p. 512-520

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The gut microbiota of soil organisms show species-specific responses to liming

    Ding, J., Zhu, D., Li, H., Ding, K., Chen, Q. L., Lassen, Simon Bo, Ke, X., O'Connor, P. & Zhu, Y. G., 1 Apr 2019, In: Science of the Total Environment. 659, p. 715-723 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Mobile Incubator for Iron(III) Reduction in the Gut of the Soil-Feeding Earthworm Pheretima guillelmi and Interaction with Denitrification

    Zhou, G. W., Yang, X. R., Sun, A. Q., Li, H., Lassen, Simon Bo, Zheng, B. X. & Zhu, Y. G., 16 Apr 2019, In: Environmental Science and Technology. 53, 8, p. 4215-4223

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Draft Genome Sequences of Two Glycoalkaloid-Degrading Arthrobacter Strains Isolated from Green Potato Peel

    Hennessy, Rosanna Catherine, Park, B., Pathiraja, D., Choi, I., Schultz-Johansen, M. & Stougaard, P., 18 Apr 2019, In: Microbiology Resource Announcements. 8, 16, p. 1-2 8:e00226-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Detection of saxitoxin-producing cyanobacteria in subtropical Brazilian drinking water supply reservoir by quantitative PCR

    De Almeida Bispo Moraes, M., Rodrigues, R. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., May 2019.

    Research output: Contribution to conference › Poster › Research › peer-review

  26. Published

    A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions

    Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold & Hansen, Lars Hestbjerg, 1 May 2019, In: FEMS Microbiology Letters. 366, 9, p. 1-8 fnz101.

    Research output: Contribution to journal › Letter › Research › peer-review

  27. Published

    RNA Stable Isotope Probing of Potential Feammox Population in Paddy Soil

    Li, H., Su, J. Q., Yang, X. R., Zhou, G. W., Lassen, Simon Bo & Zhu, Y. G., 7 May 2019, In: Environmental Science and Technology. 53, 9, p. 4841-4849

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Imaging Gene Expression Dynamics in Pseudomonas fluorescens In5 during Interactions with the Fungus Fusarium graminearum PH-1

    Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 20 Jun 2019, In: Bio-protocol. 9, 12, 14 p., e3264.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Root-Associated Microbial Communities of Abies nordmanniana: Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth

    Garcia-Lemos, A. M., Großkinsky, D. K., Stokholm, M. S., Lund, O. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., Aug 2019, In: Frontiers in Microbiology. 10, p. 1-16 1937.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Effects of biochar amendments on antibiotic resistome of the soil and collembolan gut

    Ding, J., Yin, Y., Sun, A. Q., Lassen, Simon Bo, Li, G., Zhu, D. & Ke, X., 5 Sep 2019, In: Journal of Hazardous Materials. 377, p. 186-194

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Grey water treatment in stacked multi-layer reactors with passive aeration and particle trapping

    Prajapati, B., Jensen, Marina Bergen, Jørgensen, Niels O. G. & Petersen, N. B., 15 Sep 2019, In: Water Research. 161, p. 181-190

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Heavy metal-induced co-selection of antibiotic resistance genes in the gut microbiota of collembolans

    Ding, J., An, X. L., Lassen, Simon Bo, Wang, H. T., Zhu, D. & Ke, X., 15 Sep 2019, In: Science of the Total Environment. 683, p. 210-215

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Soil biota, antimicrobial resistance and planetary health

    Zhu, Y. G., Zhao, Y., Zhu, D., Gillings, M., Penuelas, J., Ok, Y. S., Capon, A. & Banwart, S., Oct 2019, In: Environment International. 131, p. 1-7 105059.

    Research output: Contribution to journal › Review › Research › peer-review

  34. Published

    Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp

    Zervas, A., Zeng, Y., Madsen, A. M. & Hansen, Lars Hestbjerg, 1 Oct 2019, In: Genome Biology and Evolution. 11, 10, p. 2895-2908

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Heavy metal pollution and co-selection for antibiotic resistance: A microbial palaeontology approach

    Dickinson, A. W., Power, A., Hansen, M. G., Brandt, Kristian Koefoed, Piliposian, G., Appleby, P., O'Neill, P. A., Jones, R. T., Sierocinski, P., Koskella, B. & Vos, M., Nov 2019, In: Environment International. 132, p. 1-10 105117.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation

    Hylling, O., Nikbakht Fini, M., Ellegaard-Jensen, L., Muff, J., Madsen, H. T., Aamand, J. & Hansen, Lars Hestbjerg, 1 Dec 2019, In: Science of the Total Environment. 694, p. 1-12 133710.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. 2020
  38. Published

    24 Messages on a Sustainable Career in Research at UCPH

    Larsen, K. R. (ed.), Wegener, H. C., Stein, A., Bach, A., Williams, A. R., Gall, C., Gravert, C., Gloriam, D. E., Lorenzen, E., Yvanez, E., Cappellini, E., Poulsen, F., Mortensen, J., Bentzen, J. S., Shik, J. Z., Miskowiak, K. W., Elgaard, K. K. E., Jønsson, K. A., Won, K. J., Nørgaard, L. C. & 9 others, Cantarero Arevalo, Lourdes, Kristiansen, Maria, Lund, Marianne N., Borregaard, Michael Krabbe, Høyland-Kroghsbo, Nina Molin, Iversen, Rune, Viskum, U., Nosch, Marie Louise Bech & Hjorth, Jens, 2020, University of Copenhagen. 31 p.

    Research output: Book/Report › Report › Communication

  39. Published

    Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina

    Julia Estrella, M., Florencia Fontana, M., Cumpa Velasquez, L. M., Torres Tejerizo, G. A., Diambra, L., Hansen, Lars Hestbjerg, Pistorio, M. & Ines Sannazzaro, A., 2020, In: Systematic and Applied Microbiology. 43, 1, 8 p., 126044.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement

    Zhang, H., Xie, J., Fu, Y., Cheng, J., Qu, Z., Zhao, Z., Cheng, S., Chen, T., Li, B., Wang, Q., Liu, X., Tian, B., Collinge, David B. & Jiang, D., 2020, In: Molecular Plant. 13, 10, p. 1420-1433 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice

    Moreno-Indias, I., Lundberg, R., Krych, Lukasz, Metzdorff, S. B., Kot, Witold, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2020, In: Frontiers in Microbiology. 11, 15 p., 1336.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A Multifunctional Polysaccharide Utilization Gene Cluster in Colwellia echini Encodes Enzymes for the Complete Degradation of κ-Carrageenan, ι-Carrageenan, and Hybrid β/κ-Carrageenan

    Christiansen, L., Pathiraja, D., Bech, P. K., Schultz-Johansen, M., Hennessy, Rosanna Catherine, Teze, D., Choi, I. & Stougaard, P., 2020, In: mSphere. 5, 1, 16 p., e00792-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential

    Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus

    Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Antibacterial activity of oxytetracycline on microbial ecology of Nile tilapia (Oreochromis niloticus) gastrointestinal tract under laboratory condition

    Mannan, M., Islam, S. R., Osman, M. H., Rahman, M. K., Uddin, M. N., Kamal, M. & Reza, M. S., 2020, In: Aquaculture Research. 51, 5, p. 2125-2133 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Bakteriofagterapi

    Cold, F., Olsen, N. S., Djurhuus, Amaru Miranda & Djurhuus, Amaru Miranda, 2020, In: Ugeskrift for Laeger. 12, 9 p., V01200041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Bioaugmented Sand Filter Columns Provide Stable Removal of Pesticide Residue From Membrane Retentate

    Ellegaard-Jensen, L., Schostag, M. D., Fini, M. N., Badawi, N., Gobbi, Alex, Aamand, J. & Hansen, Lars Hestbjerg, 2020, In: Frontiers in Water. 2, 13 p., 603567.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Biodegradation kinetics testing of two hydrophobic UVCBs - potential for substrate toxicity supports testing at low concentrations

    Hammershoj, R., Sjøholm, K. K., Birch, H., Brandt, Kristian Koefoed & Mayer, P., 2020, In: Environmental Science Processes & Impacts. 22, 11, p. 2172-2180 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community

    Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture

    Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  52. Published

    Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom

    Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

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