Microbial Ecology and Biotechnology

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  1. 2016
  2. Published

    Predation and selection for antibiotic resistance in natural environments

    Leisner, Jørgen, Jørgensen, Niels O. G. & Middelboe, Mathias, 2016, In: Evolutionary Applications (Online). 9, 3, p. 427-434 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Relations between abundance of potential geosmin- and 2-MIB-producing organisms and concentrations of these compounds in water from three Australian reservoirs

    Jørgensen, Niels O. G., Podduturi, Raju & Burford, M. A., 2016, In: Journal of Water Supply: Research and Technology. AQUA. 65, 6, p. 504-513 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Resistance and Resilience of Soil Microbial Communities Exposed to Petroleum-Derived Compounds

    Modrzynski, J. J., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 84 p.

    Research output: Book/Report › Ph.D. thesis › Research

  5. Published

    Restoration of growth by manganese in a mutant strain of Escherichia coli lacking most known iron and manganese uptake systems

    Taudte, N., German, N., Zhu, Y., Grass, G. & Rensing, C. G. T., 2016, In: BioMetals. 29, 3, p. 433-450 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Role of the Colletotrichum acutatum sesquiterpene synthase CaTPS in the biosynthesis of sesquiterpenoids

    Amby, Daniel Buchvaldt, Manczak, T., Petersen, Mikael Agerlin, Sundelin, T., Weitzel, C., Grajewski, M., Simonsen, H. T. & Jensen, Birgit, 2016, In: Microbiology. 162, 10, p. 1773-1783

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    The copper metallome in prokaryotic cells

    Rensing, C. G. T., Alwathnani, H. A. & McDevitt, S. F., 2016, Stress and environmental regulation of gene expression and adaptation in bacteria. de Bruijn, F. J. (ed.). Wiley, p. 161-173 13 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    The soil microbiota harbors a diversity of carbapenem-hydrolyzing β-lactamases of potential clinical relevance

    Gudeta, D. D., Bortolaia, V., Amos, G., Wellington, E. M. H., Brandt, Kristian Koefoed, Poirel, L., Nielsen, J. B., Westh, Henrik T. & Guardabassi, Luca, 2016, In: Antimicrobial Agents and Chemotherapy. 60, 1, p. 151-160 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    The status and prospects for biotechnological approaches for attaining sustainable disease resistance

    Collinge, David B., Mullins, E., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2016, Plant pathogen resistance biotechnology. Collinge, D. B. (ed.). Wiley-Blackwell, p. 1-20 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  10. Published

    The willow microbiome is influenced by soil petroleum-hydrocarbon concentration with plant compartment-specific effects

    Tardif, S., Yergeau, E., Tremblay, J., Legendre, P., Whyte, L. G. & Greer, C. W., 2016, In: Frontiers in Microbiology. 7, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Two draft genome sequences of Pseudomonas jessenii strains isolated from a copper contaminated site in Denmark

    Qin, Y., Wang, D., Brandt, Kristian Koefoed & Rensing, C., 2016, In: Standards in Genomic Sciences. 11, 9 p., 86.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Foreword

    Collinge, David B., 8 Apr 2016, Plant Pathogen Resistance Biotechnology. Wiley-Blackwell, p. xix-xxiii

    Research output: Chapter in Book/Report/Conference proceeding › Preface/postscript › Research › peer-review

  13. 2017
  14. Published

    Azadirachta indica reduces black sigatoka in east african highland banana by direct antimicrobial effects against Mycosphaerella fijiensis without inducing resistance

    Kumakech, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Edema, R. & Okori, P., 2017, In: Journal of Agricultural Science. 9, 4, p. 61-76 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil

    Zheng, B. X., Bi, Q. F., Hao, X., Zhou, G. W. & Yang, X. R., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 8, p. 2514-2519 6 p., 001916.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Paraglaciecola hydrolytica sp nov., a bacterium with hydrolytic activity against multiple seaweed-derived polysaccharides

    Bech, P. K., Schultz-Johansen, M., Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 7, p. 2242-2247 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Pararhizobium antarcticum sp nov., isolated from Antarctic water samples

    Naqvi, S. U., Qin, Y., Tahir, A. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, p. 1650-1655 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Serendipita indica provides resilience against salinity stress in tomato

    Koutouleas, Tina, Manzotti, A., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017.

    Research output: Contribution to conference › Poster › Research

  20. Published

    A microplate reader-based system for visualizing transcriptional activity during in vivo microbial interactions in space and time

    Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 2017, In: Scientific Reports. 7, 6 p., 281.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Adhesion to sand and ability to mineralise low pesticide concentrations are required for efficient bioaugmentation of flow-through sand filters

    Samuelsen, E. D., Badawi, N., Nybroe, O., Sørensen, S. R. & Aamand, J., 2017, In: Applied Microbiology and Biotechnology. 101, 1, p. 411-421 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    An underappreciated hotspot of antibiotic resistance: the groundwater near the municipal solid waste landfill

    Chen, Q., Li, H., Zhou, X., Zhao, Y., Su, J., Zhang, X. & Huang, F., 2017, In: Science of the Total Environment. 609, p. 966-973 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Arctic Biotechnology – Sustainable Products and Processes from Arctic Biological Resources

    Thøgersen, M. S., Hennessy, Rosanna Catherine & Stougaard, P., 2017.

    Research output: Contribution to conference › Poster › Research

  24. Published

    Biocide runoff from building facades: degradation kinetics in soil

    Bollmann, U. E., Fernandez Calviño, D., Brandt, Kristian Koefoed, Storgaard, M. S., Sanderson, H. & Bester, K., 2017, In: Environmental Science & Technology (Washington). 51, 7, p. 3694-3702 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Biosynthesis of the antimicrobial cyclic lipopeptides nunamycin and nunapeptin by Pseudomonas fluorescens strain In5 is regulated by the LuxR-type transcriptional regulator NunF

    Hennessy, Rosanna Catherine, Phippen, C. B. W., Nielsen, K. F., Olsson, S. & Stougaard, P., 2017, In: MicrobiologyOpen. 6, 6, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Changes in free amino acid content during naupliar development of the Calanoid copepod Acartia tonsa

    Rayner, T. A., Jørgensen, Niels O. G., Drillet, G. & Hansen, B. W., 2017, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 210, p. 1-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Comparison of metals and tetracycline as selective agents for development of tetracycline resistant bacterial communities in agricultural soil

    Song, J., Rensing, C., Holm, Peter Engelund, Virta, M. & Brandt, Kristian Koefoed, 2017, In: Environmental Science & Technology (Washington). 51, 5, p. 3040-3047 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Constructing and screening a metagenomic library of a cold and alkaline extreme environment

    Glaring, M. A., Vester, J. K. & Stougaard, P., 2017, Metagenomics. Streit, W. R. & Daniel, R. (eds.). Springer, p. 43-55 13 p. (Methods in Molecular Biology, Vol. 1539).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  29. Published

    Discovery of novel algae-degrading enzymes from marine bacteria

    Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine & Stougaard, P., 2017.

    Research output: Contribution to conference › Poster › Research

  30. Published

    Ecotoxicological assessment of propiconazole using soil bacterial and fungal growth assays

    Fernandez Calviño, D., Rousk, J., Baath, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2017, In: Agriculture, Ecosystems & Environment. 115, p. 27-30

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Effects of Metals on Antibiotic Resistance and Conjugal Plasmid Transfer in Soil Bacterial Communities

    Song, J., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 119 p.

    Research output: Book/Report › Ph.D. thesis › Research

  32. Published

    Effects of two different high-fidelity DNA polymerases on genetic analysis of the cyanobacterial community structure in a subtropical deep freshwater reservoir

    Zhen, Z., Liu, J., Rensing, C. G. T., Yan, C. & Zhang, Y., 2017, In: Archives of Microbiology. 199, 1, p. 125-134 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Endophytes for biological control of Septoria tritici blotch of wheat

    Latz, Meike, Seeliger, M., Collinge, David B., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017.

    Research output: Contribution to conference › Poster › Research

  34. Published

    Fight fungi with fungi: endophytes as biocontrol agents on wheat

    Rojas Tayo, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Henriksson, T., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 99 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  35. Published

    Fungal endophytes – the hidden inducers of volatile terpene biosynthesis in tomato plants

    Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Cernava, T., Berg, G. & Hamberger, B., 2017.

    Research output: Contribution to conference › Conference abstract for conference › Research

  36. Published

    Harnessing endophytes for biological control of Septoria tritici blotch

    Latz, Meike, Collinge, David B., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 103 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  37. Published

    How do phytohormones influence the composition of fungal endophyte communities in tomato roots?

    Manzotti, A., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 124 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  38. Published

    Interaction of the psychrotroph Pseudomonas fluorescens In5 with phytopathogens in cold soils

    Hennessy, Rosanna Catherine, Olsson, S. & Stougaard, P., 2017, p. 17-17.

    Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

  39. Published

    Long-term nitrogen fertilization decreased the abundance of inorganic phosphate solubilizing bacteria in an alkaline soil

    Zheng, B., Hao, X., Ding, K., Zhou, G., Chen, Q., Zhang, J. & Zhu, Y., 2017, In: Scientific Reports. 7, 10 p., 42284.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner

    Klümper, U., Dechesne, A., Riber, Leise, Brandt, Kristian Koefoed, Gülay, A., Sørensen, Søren Johannes & Smets, B. F., 2017, In: The ISME Journal. 11, 1, p. 152-165 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Penicillium bilaii effects on maize growth and P uptake from soil and localized sewage sludge in a rhizobox experiment

    Gomez Muñoz, B., Pittroff, S. M., de Neergaard, Andreas, Jensen, Lars Stoumann, Nicolaisen, Mette Haubjerg & Magid, Jakob, 2017, In: Biology and Fertility of Soils. 53, 1, p. 23-35 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Phytohormones in plant-endophyte interactions: investigating the role of these compounds in the recruitment of tomato root fungal endophytes

    Manzotti, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Jensen, Birgit, 2017.

    Research output: Contribution to conference › Conference abstract for conference › Research

  43. Published

    Potential contribution of fish feed and phytoplankton to the content of volatile terpenes in cultured Pangasius (Pangasianodon hypophthalmus) and Tilapia (Oreochromis niloticus)

    Podduturi, Raju, Petersen, Mikael Agerlin, Mahmud, S., Rahman, M. M. & Jørgensen, Niels O. G., 2017, In: Journal of Agricultural and Food Chemistry. 65, 18, p. 3730-3736 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Survival of chicken ascarid eggs exposed to different soil types and fungi

    Thapa, S., Mejer, Helena, Thamsborg, Stig Milan, Lekfeldt, J. D. S., Wang, R., Jensen, Birgit, Magid, Jakob & Meyling, Nicolai Vitt, 2017, In: Agriculture, Ecosystems & Environment. 121, p. 143-151 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    The root external mycelium of mycorrhizal fungi has a key role in plant nutrition but is suppressed by the soil microbiota

    Cruz Paredes, C., Watts-Williams, S. J., Battini, F., Joner, E. J., Svenningsen, N. B., Dela Cruz, Majbrit, Christensen, Jan H., Nybroe, O. & Jakobsen, Iver, 2017, Proceedings Book: XVIII International Plant Nutrition Colloquium with Boron and Manganese Satellite Meetings. Carstensen, A., Laursen, K. H. & Schjoerring, J. K. (eds.). University of Copenhagen, p. 116-117 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  46. Published

    Transcriptome analysis sheds light on the Serendipita indica-tomato interaction

    Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Hamberger, B., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 119 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  47. Published

    Transcriptomic profiling of microbe-microbe interactions reveals the specific response of the biocontrol strain P. fluorescens In5 to the phytopathogen Rhizoctonia solani

    Hennessy, Rosanna Catherine, Glaring, M. A., Olsson, S. & Stougaard, P., 2017, In: BMC Research Notes. 10, 15 p., 376.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Imaging transcription during microbe-microbe interactions

    Hennessy, Rosanna Catherine, Olsson, S. & Stougaard, P., 13 Nov 2017, p. 79-79.

    Research output: Contribution to conference › Poster › Research › peer-review

  50. 2018
  51. Published

    Colwellia echini sp. nov., an agar- and carrageenan-solubilizing bacterium isolated from sea urchin

    Christiansen, L., Bech, P. K., Schultz-Johansen, M., Martens, Helle Jakobe & Stougaard, P., 2018, In: International Journal of Systematic and Evolutionary Microbiology. 68, 2, p. 687-691 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    A broad-host range dual-fluorescence reporter system for gene expression analysis in Gram-negative bacteria

    Hennessy, Rosanna Catherine, Christiansen, L., Olsson, S. & Stougaard, P., 2018, In: Journal of Microbiological Methods. 144, p. 173-176 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  53. Published

    A cerato-platanin protein SsCP1 targets plant PR1 and contributes to virulence of Sclerotinia sclerotiorum

    Yang, G., Tang, L., Gong, Y., Xie, J., Fu, Y., Jiang, D., Li, G., Collinge, David B., Chen, W. & Cheng, J., 2018, In: New Phytologist. 217, 2, p. 739-755 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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