- Published
Botanicals, endophytes and plant growth-promoting rhizobacteria (PGPR) to control Black Sigatoka disease of banana in Uganda
Mortensen, C. N., Collinge, David B., Jørgensen, Hans Jørgen Lyngs, Gumisiriya, C., Kumakech, A., Kateete, S. N. & Okori, P., 2013, Makerere University.Research output: Book/Report › Report › Research
- Published
Diagnosis of Plant Diseases
Munk, Lisa, Collinge, David B., Djurle, A. & Tronsmo, A. M., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 164-181 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Disease Management Strategies Using Host Resistance
Munk, Lisa, Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 307-320 14 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, Tina Vicky Alstrup, Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In: The Journal of Immunology. 204, 11, p. 3042-3055 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parasite-Probiotic Interactions in the Gut: Bacillus sp. and Enterococcus faecium Regulate Type-2 Inflammatory Responses and Modify the Gut Microbiota of Pigs During Helminth Infection
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Krych, Lukasz, Jakobsen, S. R., Kot, Witold, Skovgaard, K., Canibe, N., Nejsum, P., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: Frontiers in Immunology. 12, 793260.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Contribution of the seed microbiome to weed management
Müller-Stöver, Dorette Sophie, Nybroe, O., Baraibar, B., Loddo, D., Eizenberg, H., French, K., Sønderskov, M., Neve, Paul, Peltzer, D. A., Maczey, N. & Christensen, Svend, 2016, In: Weed Research. 56, 5, p. 335-339 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pararhizobium antarcticum sp nov., isolated from Antarctic water samples
Naqvi, S. U., Qin, Y., Tahir, A. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, p. 1650-1655 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association of Dietary Patterns with Testicular Function in Young Danish Men
Nassan, F. L., Jensen, T. K., Priskorn, L., Halldorsson, T. I., Chavarro, J. E. & Jørgensen, Niels O. G., 21 Feb 2020, In: JAMA Network Open. 3, 2, 16 p., e1921610.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Back to the future of soil metagenomics
Nesme, J., Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., Murrell, J. C., Myrold, D. D., Nalin, R. & 28 others, , 2016, In: Frontiers in Microbiology. 7, 5 p., 73.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The gut microbiome and abiotic factors as potential determinants of postprandial glucose responses: A single-arm meal study
Nestel, N., Hvass, J. D., Bahl, M. I., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Dragsted, Lars Ove & Roager, Henrik Munch, 2021, In: Frontiers in Nutrition. 7, 9 p., 594850.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biological control of rice sheath blight using hyphae-associated bacteria: development of an in planta screening assay to predict biological control agent performance under field conditions
Nicolaisen, Mette Haubjerg, Nguyen Duc Cuong, Herschend, J., Jensen, Birgit, Le Cam Loan, Pham Van Du, Sørensen, Jan, Sørensen, Helle & Olsson, S., 2018, In: BioControl. 63, 6, p. 843-853Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Induced resistance in sugar beet against Cercospora beticola: Induction by dichloroisonicotinic acid is independent of chitinase and β-1,3-glucanase transcript accumulation
Nielsen, K. K., Bojsen, K., Collinge, David B. & Mikkelsen, Jens D., 1 Jan 1994, In: Physiological and Molecular Plant Pathology. 45, 2, p. 89-99 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids
Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.Research output: Working paper › Preprint
- Published
Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18
Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Nielsen, Tue Kjærgaard, Horemans, B., Lood, C., T’Syen, J., van Noort, V., Lavigne, R., Ellegaard-Jensen, L., Hylling, Ole, Aamand, J., Springael, D. & Hansen, Lars Hestbjerg, 2021, In: Scientific Reports. 11, 12 p., 18943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
Nielsen, Tue Kjærgaard, Browne, Patrick Denis & Hansen, Lars Hestbjerg, 2022, In: GigaScience. 11, 17 p., giac072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson, J. F., Castellani, L. G., Draghi, W. O., Mogro, E. G., Wibberg, D., Winkler, A., Hansen, Lars Hestbjerg, Schluüter, A., Puühler, A., Kalinowski, J., Tejerizo, G. A. T. & Pistorio, M., 2021, In: FEMS Microbiology Ecology. 97, 1, fiaa235.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant-endophyte interactions as a source of bioactive compounds: Regulation of specialised metabolism during tomato and Serendipita indica interaction
Ntana, F., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Pseudomonas nunensis sp. nov. isolated from a suppressive potato field in Greenland
Ntana, F., Hennessy, Rosanna Catherine, Zervas, A. & Stougaard, P., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 2, 8 p., 005700.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungal endophytes – the hidden inducers of volatile terpene biosynthesis in tomato plants
Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Cernava, T., Berg, G. & Hamberger, B., 2017.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Transcriptome analysis sheds light on the Serendipita indica-tomato interaction
Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Hamberger, B., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 119 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
Regulation of Tomato Specialised Metabolism after Establishment of Symbiosis with the Endophytic Fungus Serendipita indica
Ntana, F., Johnson, S. R., Hamberger, B., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2022, In: Microorganisms. 10, 17 p., 194.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol
Ntana, F., Bhat, W. W., Johnson, S. R., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Jensen, Birgit & Hamberger, B., 2021, In: Biomolecules. 11, 6, 16 p., 898.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Method for producing the sesquiterpene viridiflorol with a fungal enzyme
Ntana, F., Collinge, David B., Hamberger, B. R., Bhat, W. W., Johnson, S. R., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2021, IPC No. A61K-000/00, C12N-009/88, Patent No. WO2021050841-A2, 11 Sep 2020Research output: Patent
- Published
Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure
Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field
Nunes, I., Hansen, Veronika, Bak, Frederik, Bonnichsen, L., Su, J., Hao, X., Raymond, Nelly Sophie, Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Nybroe, O., 2022, In: FEMS Microbiology Ecology. 98, 3, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Perspectives on the use of by-products to treat soil and water pollution
Nunez-Delgado, A., Alvarez-Rodriguez, E., Fernandez-Sanjurjo, M. J., Carlos Novoa-Munoz, J., Arias-Estevez, M. & Fernandez Calviño, D., 2015, In: Microporous and Mesoporous Materials. 210, p. 199-201 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential
Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment
Olsen, Nikoline S., Forero Junco, Laura Milena, Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: Viruses. 12, 9, 21 p., 986.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Salmonella phage akira, infecting selected Salmonella enterica Enteritidis and Typhimurium strains, represents a new lineage of bacteriophages
Olsen, Nikoline S., Lametsch, Rene, Wagner, N., Hansen, Lars Hestbjerg & Kot, Witold, 2022, In: Archives of Virology. 167, p. 2049–2056Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae
Olsen, Nikoline S., Nielsen, K. J., Plöger, M., Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Archives of Virology. 166, p. 593-599 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Hitchhiker’s Guide to Statistical Analysis of Feature-based Molecular Networks from Non-Targeted Metabolomics Data
Pakkir Shah, A. K., Walter, A., Ottosson, F., Russo, F., Navarro-Díaz, M., Boldt, J., Kalinski, J-C., Kontou, E. E., Elofson, J., Polyzois, A., González-Marín, C., Farrell, S., Aggerbeck, M. R., Pruksatrakul, T., Chan, N., Wang, Y., Pöchhacker, M., Brungs, C., Cámara, B., Caraballo-Rodríguez, A. M. & 37 others, , 2023, ChemRxiv, 83 p.Research output: Working paper › Preprint
- Published
BacMet: antibacterial biocide and metal resistance genes database
Pal, C., Bengtsson-Palme, J., Rensing, C. G. T., Kristiansson, E. & Larsson, D. G. J., 2014, In: Nucleic Acids Research. 42, D1, p. D737-D743 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic variation and genomic variation in insect virulence traits reveal patterns of intraspecific diversity in a locust-specific fungal pathogen
mbs625, mbs625, Meyling, Nicolai Vitt & de Fine Licht, Henrik Hjarvard, 2023, In: Journal of Evolutionary Biology. 36, 10, p. 1438-1454 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T
Pathiraja, D., Christiansen, L., Park, B., Schultz-Johansen, M., Bang, G., Stougaard, P. & Choi, I. G., 2021, In: Applied and Environmental Microbiology. 87, 12, 19 p., e00230-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improving Griffith's protocol for co-extraction of microbial DNA and RNA in adsorptive soils
Paulin, M. M., Nicolaisen, Mette Haubjerg, Jacobsen, C. S., Gimsing, A. L., Sørensen, Jan & Bælum, J., 2013, In: Soil Biology & Biochemistry. 63, p. 37-49 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus
Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae
Pedersen, Julie Stenberg, Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold, Neve, H. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 237-244 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of risks related to agricultural use of sewage sludge, pig and cattle slurry
Pedersen, K. E., Brandt, Kristian Koefoed, Hansen, M., Cedergreen, Nina & Magid, Jakob, 2019, Department of Plant and Environmental Sciences, University of Copenhagen. 143 p.Research output: Book/Report › Report › Research
- Published
Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers
Peixoto, L., Olesen, J. E., Elsgaard, L., Lønne Enggrob, K., C. Banfield, C., Dippold, M. A., Nicolaisen, Mette Haubjerg, Bak, Frederik, Zang, H., Dresbøll, Dorte Bodin, Thorup-Kristensen, Kristian & Rasmussen, J., 2022, In: Scientific Reports. 12, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Plant Pathogens
Perssona, P., Pirhonen, M. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 89-106 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Geosmin off-flavour in pond-raised fish in southern Bangladesh and occurrence of potential off-flavour producing organisms
Petersen, Mikael Agerlin, Alam, A., Rahman, M., Ali, L., Mahmud, S., Schlüter, L. & Jørgensen, Niels O. G., 2014, In: Aquaculture Environment Interactions. 5, p. 107-116 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ballast water treatment and bacteria: Analysis of bacterial activity and diversity after treatment of simulated ballast water by electrochlorination and UV exposure
Petersen, N. B., Madsen, T., Glaring, M. A., Dobbs, F. C. & Jørgensen, Niels O. G., 2019, In: Science of the Total Environment. 648, p. 408-421 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Understanding the mechanisms underlying biological control of Fusarium diseases in cereals
Petrucci, A., Khairullina, A., Sarrocco, S., Jensen, Dan Funck, Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2023, In: European Journal of Plant Pathology. 167, p. 453-476Research output: Contribution to journal › Review › Research › peer-review
- Published
UHLPC- QTOF and MALDI-TOF analysis of novel antifungal natural products
Phippen, C., Nielsen, K. F., Hennessy, Rosanna Catherine, Michelsen, C. F. & Stougaard, P., 2015.Research output: Contribution to conference › Poster › Research › peer-review
- Published
A novel microcosm to identify inherently competitive microorganisms with the ability to mineralize phytate in solum
Pittroff, S. M., Olsson, S., Doolette, A., Greiner, R., Richardson, A. E. & Nicolaisen, Mette Haubjerg, 2021, In: Soil Ecology Letters. 3, p. 367-382Research output: Contribution to journal › Journal article › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
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The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
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Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
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