Microbial Ecology and Biotechnology

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  1. 2019
  2. Published

    Mobile Incubator for Iron(III) Reduction in the Gut of the Soil-Feeding Earthworm Pheretima guillelmi and Interaction with Denitrification

    Zhou, G. W., Yang, X. R., Sun, A. Q., Li, H., Lassen, Simon Bo, Zheng, B. X. & Zhu, Y. G., 16 Apr 2019, In: Environmental Science and Technology. 53, 8, p. 4215-4223

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    The gut microbiota of soil organisms show species-specific responses to liming

    Ding, J., Zhu, D., Li, H., Ding, K., Chen, Q. L., Lassen, Simon Bo, Ke, X., O'Connor, P. & Zhu, Y. G., 1 Apr 2019, In: Science of the Total Environment. 659, p. 715-723 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile

    Krüger, U. S., Dechesne, A., Bak, Frederik, Badawi, N., Nybroe, O. & Aamand, J., 15 Mar 2019, In: Applied and Environmental Microbiology. 85, 6, p. 1-16 e02658-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Evidence for co-selection of antibiotic resistance genes and mobile genetic elements in metal polluted urban soils

    Zhao, Y., Cocerva, T., Cox, S., Tardif, S., Su, J. Q., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Mar 2019, In: Science of the Total Environment. 656, p. 512-520

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Assessment of biochar and zero-valent iron for in-situ remediation of chromated copper arsenate contaminated soil

    Frick, H., Tardif, S., Kandeler, E., Holm, Peter Engelund & Brandt, Kristian Koefoed, 10 Mar 2019, In: Science of the Total Environment. 655, p. 414-422 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile

    Bak, Frederik, Nybroe, O., Zheng, B., Badawi, N., Hao, X., Nicolaisen, Mette Haubjerg & Aamand, J., 1 Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-12 fiz008.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Suppression of arbuscular mycorrhizal fungal activity in a diverse collection of non-cultivated soils

    Cruz Paredes, C., Svenningsen, N. B., Nybroe, O., Kjøller, Rasmus, Frøslev, Tobias Guldberg & Jakobsen, Iver, Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-10 fiz020.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Factors governing the solid phase distribution of Cr, Cu and As in contaminated soil after 40 years of ageing

    Tardif, S., Cipullo, S., Sø, H. U., Wragg, J., Holm, Peter Engelund, Coulon, F., Brandt, Kristian Koefoed & Cave, M., 20 Feb 2019, In: Science of the Total Environment. 652, p. 744-754

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Linking bioavailability and toxicity changes of complex chemicals mixture to support decision making for remediation endpoint of contaminated soils

    Cipullo, S., Negrin, I., Claveau, L., Snapir, B., Tardif, S., Pulleyblank, C., Prpich, G., Campo, P. & Coulon, F., 10 Feb 2019, In: Science of the Total Environment. 650, Part 2, p. 2150-2163 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system

    Lukassen, M. B., Podduturi, Raju, Rohaan, B., Jørgensen, Niels O. G. & Nielsen, J. L., 1 Feb 2019, In: Aquaculture. 500, p. 170-177 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    AsChip: A High-Throughput qPCR Chip for Comprehensive Profiling of Genes Linked to Microbial Cycling of Arsenic

    Zhao, Y., Su, J. Q., Ye, J., Rensing, C., Tardif, S., Zhu, Y. G. & Brandt, Kristian Koefoed, 15 Jan 2019, In: Environmental Science and Technology. 53, 2, p. 798-807 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Evaluation of pH-Dependent Metal Speciation Artifacts in Whole-Cell Bioreporter Analysis

    Hansen, M. G., Marcussen, H., Holm, Peter Engelund & Brandt, Kristian Koefoed, 1 Jan 2019, In: Journal of Environmental Quality. 48, 1, p. 199-204 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Fertilising effect of sewage sludge ash inoculated with the phosphate-solubilising fungus Penicillium bilaiae under semi-field conditions

    Raymond, Nelly Sophie, Jensen, Lars Stoumann, van der Bom, Frederik, Nicolaisen, Mette Haubjerg & Müller-Stöver, Dorette Sophie, 1 Jan 2019, In: Biology and Fertility of Soils. 55, 1, p. 43-51 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Fusarium diseases: biology and management perspectives

    Rojas Tayo, E. C., Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit & Collinge, David B., 2019, Integrated disease management of wheat and barley. Burleigh Dodds Science Publishing Limited, Vol. 19. 23 p. (Burleigh Dodds series in agricultural science).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  16. Published

    Assessment of risks related to agricultural use of sewage sludge, pig and cattle slurry

    Pedersen, K. E., Brandt, Kristian Koefoed, Hansen, M., Cedergreen, Nina & Magid, Jakob, 2019, Department of Plant and Environmental Sciences, University of Copenhagen. 143 p.

    Research output: Book/Report › Report › Research

  17. Published

    Ballast water treatment and bacteria: Analysis of bacterial activity and diversity after treatment of simulated ballast water by electrochlorination and UV exposure

    Petersen, N. B., Madsen, T., Glaring, M. A., Dobbs, F. C. & Jørgensen, Niels O. G., 2019, In: Science of the Total Environment. 648, p. 408-421 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2

    Sher, S., Rehman, A., Hansen, Lars Hestbjerg & Nielsen, Tue Kjærgaard, 2019, In: Microbiology Resource Announcements. 8, 31, 2 p., e00531-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Defining the twig fungal communities of Fraxinus species and Fraxinus excelsior genotypes with differences in susceptibility to ash dieback

    Kosawang, Chatchai, Sørensen, Helle, Kjær, Erik Dahl, Dilokpimol, A., McKinney, L. V., Collinge, David B. & Nielsen, Lene Rostgaard, 2019, In: Fungal Ecology. 42, 8 p., 100859.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Development and Application of High-throughput qPCR based Chips to study Arsenic Biotransformation and Antibiotic Resistance Genes in Contaminated Environments

    Zhao, Y., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  21. Published

    Emerging Methods for Biological Control of Barley Diseases Including the Role of Endophytes

    Høyer, A. K., Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit, Murphy, B. R. & Hodkinson, T. R., 2019, Endophytes for a Growing World. Hodkinson, T. R., Doohan, F. M., Saunders, M. J. & Murphy, B. R. (eds.). Cambridge University Press, p. 93-119 27 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  22. Published

    Evaluating the microbial effects of stocking freshwater snails (Physa gyrina) in water reuse systems culturing rainbow trout (Oncorhynchus mykiss)

    Davidson, J., Plautz, C. Z., Grimm, C., Jørgensen, Niels O. G., Podduturi, Raju, Raines, C., Snader, R., Summerfelt, S. & Good, C., 2019, In: Journal of Applied Aquaculture. 31, 2, p. 97-120

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Evaluation of dimethyl sulfoxide (DMSO) as a co-solvent for toxicity testing of hydrophobic organic compounds

    Modrzyński, J. J., Christensen, Jan H. & Brandt, Kristian Koefoed, 2019, In: Ecotoxicology. 28, p. 1136-1141

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum - A Novel Lineage of Lactobacillus Phages Comprising Five New Members

    Kyrkou, I., Carstens, Alexander Byth, Ellegaard-Jensen, L., Kot, Witold, Zervas, A., Djurhuus, Amaru Miranda, Neve, H., Hansen, M. & Hansen, Lars Hestbjerg, 2019, In: Viruses. 11, 7, 20 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Exploring the endophytic fungal microbiome of tomato roots: The role of phytohormones in plant-endophyte interactions

    Manzotti, A., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages

    Alves, D. R., Nzakizwanayo, J., Dedi, C., Olympiou, C., Hanin, A., Kot, Witold, Hansen, Lars Hestbjerg, Lametsch, Rene, Gahan, C. G. M., Schellenberger, P., Ogilvie, L. A. & Jones, B. V., 2019, In: Frontiers in Microbiology. 10, p. 1-14 1783.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    How to disentangle microbially functional complexity: an insight from the network analysis of C, N, P and S cycling genes

    Zheng, B., Zhao, Y., Bi, Q., Zhou, G., Wang, H., Hao, X. & Ding, K., 2019, In: Science Bulletin. 64, 16, p. 1129-1131

    Research output: Contribution to journal › Editorial › Research

  28. Published

    Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments

    Lukassen, M. B., Jonge, N. D., Bjerregaard, S. M., Podduturi, Raju, Jørgensen, Niels O. G., Petersen, Mikael Agerlin, David, G. S., da Silva, R. J. & Nielsen, J. L., 2019, In: Frontiers in Microbiology. 10, 12 p., 2447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    Microbiota in preferential flow paths: Composition and lifestyles of microbial communities in an understudied subsurface environment

    Bak, Frederik, 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  30. Published

    New microorganisms for mobilization of organic phosphate from soil

    Pittroff, S. M., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  31. Published

    On the hunt for the alternate host of Hemileia vastatrix

    Koutouleas, Tina, Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit, Lillesø, Jens-Peter Barnekow, Junge, A. & Ræbild, Anders, 2019, In: Ecology and Evolution. 9, 23, p. 13619-13631 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Plant-endophyte interactions as a source of bioactive compounds: Regulation of specialised metabolism during tomato and Serendipita indica interaction

    Ntana, F., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  33. Published

    Responses to soil pH gradients of inorganic phosphate solubilizing bacteria community

    Zheng, B. X., Zhang, D. P., Wang, Y., Hao, X., Wadaan, M. A. M., Hozzein, W. N., Peñuelas, J., Zhu, Y. G. & Yang, X. R., 2019, In: Scientific Reports. 9, p. 1-8 25.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Searching for novel fungal biological control agents for plant disease control among endophytes

    Collinge, David B., Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Manzotti, A., Ntana, F., Rojas Tayo, E. C. & Jensen, Birgit, 2019, Endophytes for a growing world. Hodkinson, T., Doohan, F., Saunders, M. & Murphy, B. (eds.). Cambridge University Press, p. 25-51 17 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  35. Published

    Sepsis-related Organ Failure Assessment Score is a strong predictor of survival in acute-on-chronic liver failure

    Cold, F., Schiødt, Frank Vinholt, Pott, Frank Christian, Strandkjær, N. & Christensen, E., 2019, In: Danish Medical Journal. 66, 8, 5 p., A5557.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Soil bacteria and protists show different sensitivity to polycyclic aromatic hydrocarbons at controlled chemical activity

    Winding, A., Modrzyński, J. J., Christensen, Jan H., Brandt, Kristian Koefoed & Mayer, P., 2019, In: FEMS Microbiology Letters. 366, 17, fnz214.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Soil – Microbiome – Contaminant Interactions: Pre and Post Remediation of Chromated Copper Arsenate Contaminated Soil

    Tardif, S., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  38. Published

    Testing the yield of a pilot-scale bubble column photobioreactor for cultivation of the microalga Rhodomonas salina as feed for intensive calanoid copepod cultures

    Vu, M. T. T., Jepsen, P. M., Jørgensen, Niels O. G., Hansen, B. W. & Nielsen, S. L., 2019, In: Aquaculture Research. 50, 1, p. 63-71 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Use of endophytic fungi as biocontrol agents of cereal diseases

    Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Latz, Meike, Rojas Tayo, E. C. & Jensen, Birgit, 2019, WMF meets IUPAC 2019: Abstracts of lectures and posters. The World Mycotoxin Forum, p. 31 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  40. 2018
  41. Published

    Carbon mineralization and microbial activity in agricultural topsoil and subsoil as regulated by root nitrogen and recalcitrant carbon concentrations

    Liang, Z., Elsgaard, L., Nicolaisen, Mette Haubjerg, Lyhne-Kjærbye, A. & Olesen, J. E., 1 Dec 2018, In: Plant and Soil. 433, 1-2, p. 65-82

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Microbially induced off-flavours in aquaculture production

    Podduturi, Raju, Dec 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  43. Published

    Endophytic fungi as biocontrol agents: elucidating mechanisms in disease suppression

    Latz, Meike, Jensen, Birgit, Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2 Nov 2018, In: Plant Ecology and Diversity. 11, 5-6, p. 555-567

    Research output: Contribution to journal › Review › Research › peer-review

  44. Published

    Feed additives shift gut microbiota and enrich antibiotic resistance in swine gut

    Zhao, Y., Su, J., An, X., Huang, F., Rensing, C., Brandt, Kristian Koefoed & Zhu, Y., 15 Apr 2018, In: Science of the Total Environment. 621, p. 1224-1232 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Colwellia echini sp. nov., an agar- and carrageenan-solubilizing bacterium isolated from sea urchin

    Christiansen, L., Bech, P. K., Schultz-Johansen, M., Martens, Helle Jakobe & Stougaard, P., 2018, In: International Journal of Systematic and Evolutionary Microbiology. 68, 2, p. 687-691 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A broad-host range dual-fluorescence reporter system for gene expression analysis in Gram-negative bacteria

    Hennessy, Rosanna Catherine, Christiansen, L., Olsson, S. & Stougaard, P., 2018, In: Journal of Microbiological Methods. 144, p. 173-176 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A cerato-platanin protein SsCP1 targets plant PR1 and contributes to virulence of Sclerotinia sclerotiorum

    Yang, G., Tang, L., Gong, Y., Xie, J., Fu, Y., Jiang, D., Li, G., Collinge, David B., Chen, W. & Cheng, J., 2018, In: New Phytologist. 217, 2, p. 739-755 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    A novel enzyme portfolio for red algal polysaccharide degradation in the marine bacterium Paraglaciecola hydrolytica S66T encoded in a sizeable polysaccharide utilization locus

    Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine, Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2018, In: Frontiers in Microbiology. 9, 15 p., 839.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    A screening method for the isolation of bacteria capable of degrading toxic steroidal glycoalkaloids present in potato

    Hennessy, Rosanna Catherine, Jørgensen, Niels O. G., Scavenius, C., Enghild, J. J., Greve-Poulsen, M., Sørensen, O. B. & Stougaard, P., 2018, In: Frontiers in Microbiology. 9, p. 1-7 7 p., 2648.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Biological control of rice sheath blight using hyphae-associated bacteria: development of an in planta screening assay to predict biological control agent performance under field conditions

    Nicolaisen, Mette Haubjerg, Nguyen Duc Cuong, Herschend, J., Jensen, Birgit, Le Cam Loan, Pham Van Du, Sørensen, Jan, Sørensen, Helle & Olsson, S., 2018, In: BioControl. 63, 6, p. 843-853

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Can phytohormones influence the composition of the endophytic microbiome in tomato roots?

    Manzotti, A., Bergna, A., Cernava, T., Berg, G., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2018, p. 218. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  52. Published

    Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production

    Schluter, L., David, G. S., Jørgensen, Niels O. G., Podduturi, Raju, Tucci, A., Dias, A. S. & da Silva, R. J., 2018, In: Aquaculture Environment Interactions. 10, p. 35-48 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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