Microbial Ecology and Biotechnology

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  1. 2020
  2. Published

    Biotechnology for Plant Disease Control

    Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 321-329 9 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  3. Published

    Diagnosis of Plant Diseases

    Munk, Lisa, Collinge, David B., Djurle, A. & Tronsmo, A. M., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 164-181 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  4. Published

    Disease Management Strategies Using Host Resistance

    Munk, Lisa, Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 307-320 14 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  5. Published

    Geosmin fluctuations and potential hotspots for elevated levels in recirculated aquaculture system (RAS): a case study from pikeperch (Stizostedion lucioperca) production in Denmark

    Podduturi, Raju, Petersen, Mikael Agerlin, Vestergaard, M. & Jørgensen, Niels O. G., 1 Jan 2020, In: Aquaculture. 514, p. 1-8 734501.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    History of plant pathology.

    Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 11-18 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  7. Published

    Plant Defence Against Pathogens

    Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 205-215 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Plant Health Legislation

    Tronsmo, A. M., Collinge, David B. & Yuen, J., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 366-376 11 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  9. Published

    Plant Pathology and Plant Diseases

    Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 1-439 439 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  10. Published

    Race Specificity and Plant Immunity

    Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 216-233 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  11. Published

    The Disease Cycle and Lifestyles

    Tronsmo, A. M., Munk, Lisa, Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 19-36 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  12. Published

    What is a Plant Disease?

    Tronsmo, A. M., Munk, Lisa, Djurle, A., Yuen, J. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 3-10 8 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  13. Published

    24 Messages on a Sustainable Career in Research at UCPH

    Larsen, K. R. (ed.), Wegener, H. C., Stein, A., Bach, A., Williams, A. R., Gall, C., Gravert, C., Gloriam, D. E., Lorenzen, E., Yvanez, E., Cappellini, E., Poulsen, F., Mortensen, J., Bentzen, J. S., Shik, J. Z., Miskowiak, K. W., Elgaard, K. K. E., Jønsson, K. A., Won, K. J., Nørgaard, L. C. & 9 others, Cantarero Arevalo, Lourdes, Kristiansen, Maria, Lund, Marianne N., Borregaard, Michael Krabbe, Høyland-Kroghsbo, Nina Molin, Iversen, Rune, Viskum, U., Nosch, Marie Louise Bech & Hjorth, Jens, 2020, University of Copenhagen. 31 p.

    Research output: Book/Report › Report › Communication

  14. Published

    Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina

    Julia Estrella, M., Florencia Fontana, M., Cumpa Velasquez, L. M., Torres Tejerizo, G. A., Diambra, L., Hansen, Lars Hestbjerg, Pistorio, M. & Ines Sannazzaro, A., 2020, In: Systematic and Applied Microbiology. 43, 1, 8 p., 126044.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement

    Zhang, H., Xie, J., Fu, Y., Cheng, J., Qu, Z., Zhao, Z., Cheng, S., Chen, T., Li, B., Wang, Q., Liu, X., Tian, B., Collinge, David B. & Jiang, D., 2020, In: Molecular Plant. 13, 10, p. 1420-1433 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice

    Moreno-Indias, I., Lundberg, R., Krych, Lukasz, Metzdorff, S. B., Kot, Witold, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2020, In: Frontiers in Microbiology. 11, 15 p., 1336.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A Multifunctional Polysaccharide Utilization Gene Cluster in Colwellia echini Encodes Enzymes for the Complete Degradation of κ-Carrageenan, ι-Carrageenan, and Hybrid β/κ-Carrageenan

    Christiansen, L., Pathiraja, D., Bech, P. K., Schultz-Johansen, M., Hennessy, Rosanna Catherine, Teze, D., Choi, I. & Stougaard, P., 2020, In: mSphere. 5, 1, 16 p., e00792-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential

    Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus

    Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Antibacterial activity of oxytetracycline on microbial ecology of Nile tilapia (Oreochromis niloticus) gastrointestinal tract under laboratory condition

    Mannan, M., Islam, S. R., Osman, M. H., Rahman, M. K., Uddin, M. N., Kamal, M. & Reza, M. S., 2020, In: Aquaculture Research. 51, 5, p. 2125-2133 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Bakteriofagterapi

    Cold, F., Olsen, N. S., Djurhuus, Amaru Miranda & Djurhuus, Amaru Miranda, 2020, In: Ugeskrift for Laeger. 12, 9 p., V01200041.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Bioaugmented Sand Filter Columns Provide Stable Removal of Pesticide Residue From Membrane Retentate

    Ellegaard-Jensen, L., Schostag, M. D., Fini, M. N., Badawi, N., Gobbi, Alex, Aamand, J. & Hansen, Lars Hestbjerg, 2020, In: Frontiers in Water. 2, 13 p., 603567.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Biodegradation kinetics testing of two hydrophobic UVCBs - potential for substrate toxicity supports testing at low concentrations

    Hammershoj, R., Sjøholm, K. K., Birch, H., Brandt, Kristian Koefoed & Mayer, P., 2020, In: Environmental Science Processes & Impacts. 22, 11, p. 2172-2180 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Bone biodeterioration - The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community

    Eriksen, A. M. H., Nielsen, Tue Kjærgaard, Matthiesen, H., Carøe, C., Hansen, Lars Hestbjerg, Gregory, D. J., Turner-Walker, G., Collins, Matthew James & Gilbert, M Thomas P, 2020, In: PLoS ONE. 15, 10 October, 24 p., e0240512.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture

    Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  27. Published

    Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom

    Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Cross-Frontier Communication: Phytohormone Functions at the Plant-Microbe Interface and Beyond

    Berger, S., Van Wees, S. C. M., Nybroe, O. & Grosskinsky, D. K., 2020, In: Frontiers in Plant Science. 11, 2 p., 386.

    Research output: Contribution to journal › Editorial › Research

  29. Published

    Detection of preQ0 deazaguanine modifications in bacteriophage CAjan DNA using Nanopore sequencing reveals same hypermodification at two distinct DNA motifs

    Kot, Witold, Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Hutinet, G., de Crecy-Lagard, V., Cui, L., Dedon, P. C., Carstens, Alexander Byth, Moineau, S., Swairjo, M. A. & Hansen, Lars Hestbjerg, 2020, In: Nucleic Acids Symposium Series. 48, 18, p. 10383-10396 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil

    Zhang, Y., Hao, X., Garcia-Lemos, A. M., Nunes, I., Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Applied and Environmental Microbiology. 86, 10, 16 p., ARTN e02969-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Different sensitivity of a panel of Rhizophagus isolates to AMF-suppressive soils

    Cruz-Paredes, C., Jakobsen, Iver & Nybroe, O., 2020, In: Applied Soil Ecology. 155, 5 p., 103662.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Digging Deeper for Agricultural Resources, the Value of Deep Rooting

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E., Crews, T. E., Hinsinger, P., Kirkegaard, J., Pierret, A. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 406-417

    Research output: Contribution to journal › Review › Research › peer-review

  33. Published

    Discovery of a bacterial gene cluster for deglycosylation of the toxic potato steroidal glycoalkaloids α-chaconine and α-solanine

    Hennessy, Rosanna Catherine, Nielsen, S. D., Greve-Poulsen, M., Larsen, L. B., Bandsholm, O. & Stougaard, P., 2020, In: Journal of Agricultural and Food Chemistry. 68, 5, p. 1390-1396 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Dysbiosis in the Gut Microbiota of Soil Fauna Explains the Toxicity of Tire Tread Particles

    Ding, J., Zhu, D., Wang, H., Lassen, Simon Bo, Chen, Q., Li, G., Lv, M. & Zhu, Y., 2020, In: Environmental Science & Technology. 54, 12, p. 7450-7460 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities

    Cavalieri, Andrea, Bak, Frederik, Garcia-Lemos, A. M., Weiner, Jacob, Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 14 p., 1045.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Effects of reduced organic matter loading through membrane filtration on the microbial community dynamics in recirculating aquaculture systems (RAS) with Atlantic salmon parr (Salmo salar)

    Fossmark, R. O., Vadstein, O., Rosten, T. W., Bakke, I., Koseto, D., Bugten, A. V., Helberg, G. A., Nesje, J., Jørgensen, Niels O. G., Raspati, G., Azrague, K., Østerhus, S. W. & Attramadal, K. J. K., 2020, In: Aquaculture. 524, 12 p., 735268.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment

    Olsen, Nikoline S., Forero Junco, Laura Milena, Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: Viruses. 12, 9, 21 p., 986.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Exposing Deep Roots: A Rhizobox Laboratory

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 418-419

    Research output: Contribution to journal › Journal article › Research

  39. Published

    Exposure of CuO nanoparticles and their metal counterpart leads to change in the gut microbiota and resistome of collembolans

    Ding, J., Liu, J., Chang, X. B., Zhu, D. & Lassen, Simon Bo, 2020, In: Chemosphere. 258, 10 p., 127347.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

    Rasmussen, Torben Sølbeck, Mentzel, Caroline M. Junker, Kot, Witold, Castro-Mejiá, J. L., Zuffa, S., Swann, J. R., Hansen, Lars Hestbjerg, Vogensen, Finn Kvist, Hansen, Axel Kornerup & Nielsen, Dennis Sandris, 2020, In: Gut. 69, 12, p. 2122-2130 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Fecal Microbiota Transplantation in the Treatment of Chronic Pouchitis: A Systematic Review

    Cold, F., Kousgaard, S. J., Halkjaer, S. I., Petersen, Andreas Munk, Nielsen, H. L., Thorlacius-Ussing, O. & Hansen, Lars Hestbjerg, 2020, In: Microorganisms. 8, 9, 17 p., 1433.

    Research output: Contribution to journal › Review › Research › peer-review

  42. Published

    Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses

    Myhill, L. J., Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, Tina Vicky Alstrup, Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In: The Journal of Immunology. 204, 11, p. 3042-3055 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    First record of a non-indigenous lanternbelly, Acropoma argentistigma (Teleostei: Perciformes: Acropomatidae) from the Bay of Bengal coast of Bangladesh

    Hanif, M. A., Siddik, M. A. B., Islam, S. R., Islam, M. A. & Sarower-E-mahfuj, M., 2020, In: Egyptian Journal of Aquatic Biology and Fisheries. 24, 7, p. 677-684 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Free‐Standing NiO Nanosheets as Non‐Enzymatic Electrochemical Sensors

    Qin, Y., Chen, F., Halder, A. & Zhang, M., 2020, In: ChemistrySelect. 5, 8, p. 2424-2429

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Fungal-associated molecules induce key genes involved in the biosynthesis of the antifungal secondary metabolites nunamycin and nunapeptin in the biocontrol strain Pseudomonas fluorescens In5

    Christiansen, L., Alanin, K. W. S., Phippen, C., Olsson, S., Stougaard, P. & Hennessy, Rosanna Catherine, 2020, In: Applied and Environmental Microbiology. 86, 14 p., e01284-20.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Fusarium head blight modifies fungal endophytic communities during infection of wheat spikes

    Rojas, E. C., Sapkota, R., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Henriksson, T., Jørgensen, L. N., Nicolaisen, M. & Collinge, David B., 2020, In: Microbial Ecology. 79, p. 397-408 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

    Browne, Patrick Denis, Nielsen, Tue Kjærgaard, Kot, Witold, Aggerholm, A., Gilbert, M Thomas P, Puetz, Lara Christine, Rasmussen, M., Zervas, A. & Hansen, Lars Hestbjerg, 2020, In: GigaScience. 9, 2, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Genetic variation and evolutionary history of a mycorrhizal fungus regulate the currency of exchange in symbiosis with the food security crop cassava

    Savary, R., Dupuis, C., Masclaux, F. G., Mateus, I. D., Rojas, E. C. & Sanders, I. R., 2020, In: I S M E Journal. 14, 6, p. 1333-1344 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    High starter phosphorus fertilization facilitates soil phosphorus turnover by promoting microbial functional interaction in an arable soil

    Li, H., Bi, Q., Yang, K., Lassen, Simon Bo, Zheng, B., Cui, L., Zhu, Y. & Ding, K., 2020, In: Journal of Environmental Sciences. 94, p. 179-185

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Housing temperature influences exercise training adaptations in mice

    Raun, Steffen Henning, Henriquez-Olguín, Carlos, Karavaeva, Iuliia, Ali, Mona Sadek, Møller, Lisbeth L V, Kot, Witold, Castro-Mejía, J. L., Nielsen, Dennis Sandris, Gerhart-Hines, Zach, Richter, Erik A. & Sylow, Lykke, 2020, In: Nature Communications. 11, 16 p., 1560.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Identification and Characterization of a β-N-Acetylhexosaminidase with a Biosynthetic Activity from the Marine Bacterium Paraglaciecola hydrolytica S66T

    Visnapuu, T., Teze, D., Kjeldsen, C., Lie, A., Duus, J. Ø., André-Miral, C., Pedersen, L. H., Stougaard, P. & Svensson, B., 2020, In: International Journal of Molecular Sciences (Online). 21, 2, 22 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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