Microbial Ecology and Biotechnology

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  1. Published

    Impaired skeletal muscle hypertrophy signaling and amino acid deprivation response in Apoe knockout mice with an unhealthy lipoprotein distribution

    Agergaard, J., Zillmer, M. C. F., Castro-Mejía, J. L., Mertz, K., Kot, Witold, Højfeldt, Grith Stougaard, van Hall, Gerrit, Nielsen, Dennis Sandris, Schjerling, Peter & Holm, Lars Morten, 2021, In: Scientific Reports. 11, 15 p., 16423.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Muskoxen homogenise soil microbial communities and affect the abundance of methanogens and methanotrophs

    Aggerbeck, M. R., Nielsen, Tue Kjærgaard, Mosbacher, J. B., Schmidt, N. M. & Hansen, Lars Hestbjerg, 2022, In: Science of the Total Environment. 827, 9 p., 153877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina

    Aguilar, M. O., Gobbi, Alex, Browne, Patrick Denis, Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Semorile, L. & Pistorio, M., 2020, In: PLoS ONE. 15, 12, 19 p., 0243848.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage

    Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Carbone, I., Cornish, V., Müller-Stöver, Dorette Sophie, Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology Resource Announcements. 11, 11, 4 p., e0066322.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Assessment of heavy metals from pangasius and tilapia aquaculture in Bangladesh and human consumption risk

    Ahsan, M. E., Islam, S. R., Razzak, M. A., Ali, M. L. & Haque, M. M., 2022, In: Aquaculture International. 30, 3, p. 1407-1434 28 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    14-3-3 proteins: a highly conserved, widespread family of eukaryotic proteins

    Aitken, A., Collinge, David B., van Heusden, B. P. H., Isobe, T., Roseboom, P. H., Rosenfeld, G. & Soll, J., 1 Jan 1992, In: Trends in Biochemical Sciences. 17, 12, p. 498-501 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  7. E-pub ahead of print

    Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

    Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

    Research output: Contribution to journal › Review › Research › peer-review

  8. Published

    An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms

    Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay

    Alanin, K. W. S., Forero Junco, Laura Milena, Jørgensen, J. B., Nielsen, Tue Kjærgaard, Rasmussen, Morten Arendt, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Viruses. 13, 6, 21 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Four novel Curtobacterium phages isolated from environmental samples

    Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Three novel Erwinia billingiae phages isolated from organic waste represent three new genera

    Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Kot, Witold & Hansen, Lars Hestbjerg, 2023, In: Archives of Virology. 168, 7 p., 71.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Genomic and Ecogenomic Characterization of Proteus mirabilis Bacteriophages

    Alves, D. R., Nzakizwanayo, J., Dedi, C., Olympiou, C., Hanin, A., Kot, Witold, Hansen, Lars Hestbjerg, Lametsch, Rene, Gahan, C. G. M., Schellenberger, P., Ogilvie, L. A. & Jones, B. V., 2019, In: Frontiers in Microbiology. 10, p. 1-14 1783.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Role of the Colletotrichum acutatum sesquiterpene synthase CaTPS in the biosynthesis of sesquiterpenoids

    Amby, Daniel Buchvaldt, Manczak, T., Petersen, Mikael Agerlin, Sundelin, T., Weitzel, C., Grajewski, M., Simonsen, H. T. & Jensen, Birgit, 2016, In: Microbiology. 162, 10, p. 1773-1783

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Tracking antibiotic resistome during wastewater treatment using high throughput quantitative PCR

    An, X., Su, J., Li, B., Ouyang, W., Zhao, Y., Chen, Q., Cui, L., Chen, H., Gillings, M. R., Zhang, T. & Zhu, Y., 2018, In: Environment International. 117, p. 146-153

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Seed coating with the fungal biocontrol agent Clonostachys rosea controls clubroot in oilseed rape

    Andersen, C. B., Jørgensen, Hans Jørgen Lyngs, Manzotti, A. & Jensen, Birgit, 2018, In: IOBC-WPRS Bulletin. 136, p. 157-163 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Computational Tools for the Analysis of Uncultivated Phage Genomes

    Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.

    Research output: Contribution to journal › Review › Research › peer-review

  17. Published

    Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom

    Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Human health risk assessment (HHRA) for environmental development and transfer of antibiotic resistance

    Ashbolt, N. J., Amézquita, A., Backhaus, T., Borriello, P., Brandt, Kristian Koefoed, Collignon, P., Coors, A., Finley, R., Gaze, W. H., Heberer, T., Lawrence, J. R., Larsson, D. G. J., McEwen, S. A., Ryan, J. J., Schönfeld, J., Silley, P., Snape, J. R., Van den Eede, C. & Topp, E., 2013, In: Environmental Health Perspectives. 121, 9, p. 993-1001 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Hydraulically active biopores stimulate pesticide mineralization in agricultural subsoil

    Badawi, N., Johnsen, A. R., Brandt, Kristian Koefoed, Sørensen, Jan & Aamand, J., 2013, In: Soil Biology & Biochemistry. 57, p. 533-541 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    Centimeter-scale spatial variability in 2-methyl-4-chlorophenoxyacetic acid mineralization increases with depth in agricultural soil

    Badawi, N., Johnsen, A. R., Sørensen, Jan & Aamand, J., 2013, In: Journal of Environmental Quality. 42, 3, p. 683-689 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Bacterial composition associated with different traditions of salted and dried fish across countries

    Bahrndorff, S., Menanteau-Ledouble, S., Stidsborg, S., Jørgensen, Niels O. G., Hoque, M. S. & Nielsen, J. L., 2022, In: Food Bioscience. 50, 7 p., 101991.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil

    Bak, Frederik, Lyhne-Kjærbye, A., Tardif, S., Dresbøll, Dorte Bodin, Nybroe, O. & Nicolaisen, Mette Haubjerg, 2022, In: Phytobiomes Journal. 6, 3, p. 236-246 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Microbiota in preferential flow paths: Composition and lifestyles of microbial communities in an understudied subsurface environment

    Bak, Frederik, 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    The biosurfactant viscosin transiently stimulates n-hexadecane mineralization by a bacterial consortium

    Bak, Frederik, Bonnichsen, L., Jørgensen, Niels O. G., Nicolaisen, Mette Haubjerg & Nybroe, O., 2015, In: Applied Microbiology and Biotechnology. 99, 3, p. 1475-1483 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile

    Bak, Frederik, Nybroe, O., Zheng, B., Badawi, N., Hao, X., Nicolaisen, Mette Haubjerg & Aamand, J., 1 Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-12 fiz008.

    Research output: Contribution to journal › Journal article › Research › peer-review

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