Microbial Ecology and Biotechnology

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  1. 2024
  2. Published

    A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea

    Latz, Meike, Andersson, A., Brugel, S., Hedblom, M., Jurdzinski, K. T., Karlson, B., Lindh, M., Lycken, J., Torstensson, A. & Andersson, A. F., 2024, In: Scientific Data. 11, 9 p., 18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Challenges and opportunities for increasing the use of low-risk plant protection products in sustainable production. A review

    Lankinen, Å., Witzell, J., Aleklett, K., Furenhed, S., Green, K. K., Latz, Meike, Liljeroth, E., Larsson, R., Löfkvist, K., Meijer, J., Menkis, A., Ninkovic, V., Olson, Å. & Grenville-Briggs, L., 2024, In: Agronomy for Sustainable Development. 44, 22 p., 21.

    Research output: Contribution to journal › Review › Research › peer-review

  4. Published

    Do contaminants compromise the use of recycled nutrients in organic agriculture? A review and synthesis of current knowledge on contaminant concentrations, fate in the environment and risk assessment

    Bünemann, E. K., Reimer, M., Smolders, E., Smith, S. R., Bigalke, M., Palmqvist, A., Brandt, Kristian Koefoed, Möller, K., Harder, R., Hermann, L., Speiser, B., Oudshoorn, F., Løes, A. K. & Magid, Jakob, 2024, In: Science of the Total Environment. 912, 18 p., 168901.

    Research output: Contribution to journal › Review › Research › peer-review

  5. Published

    Does regulation hold the key to optimizing lipopeptide production in Pseudomonas for biotechnology?

    Zhou, L., Höfte, M. & Hennessy, Rosanna Catherine, 2024, In: Frontiers in Bioengineering and Biotechnology. 12, 28 p., 1363183.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. E-pub ahead of print

    Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data

    Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.

    Research output: Contribution to journal › Review › Research › peer-review

  7. Published

    Insights into the circular: The cryptic plasmidome and its derived antibiotic resistome in the urban water systems

    Yu, Z., He, Wanli, Klincke, F., Madsen, Jonas Stenløkke, Kot, Witold, Hansen, Lars Hestbjerg, Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, Joseph & Sørensen, Søren Johannes, 2024, In: Environment International. 183, 12 p., 108351.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Multifaceted photoreceptor compositions in dual phototrophic systems – A genomic analysis

    Ihalainen, J. A., Dogan, B., Kurttila, M., Zeng, Y., van Elsas, J. D. & Nissinen, R., 2024, In: Journal of Molecular Biology. 436, 5, 13 p., 168412.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Niche differentiation and biogeography of Bathyarchaeia in paddy soil ecosystems: a case study in eastern China

    Yi, Xingyun, Brandt, Kristian Koefoed, Xue, S., Peng, J., Wang, Y., Li, M., Deng, Y. & Duan, G., 2024, In: Environmental Microbiome. 19, 12 p., 13.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    The coffee leaf rust pandemic: An ever-present danger to coffee production

    Koutouleas, Tina, Collinge, David B. & Boa, E., 2024, In: Plant Pathology. 73, 3, p. 522-534

    Research output: Contribution to journal › Review › Research › peer-review

  11. Published

    The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates

    Xie, Zhuqing, He, W., Gobbi, Alex, Bertram, H. C. & Nielsen, Dennis Sandris, 2024, In: BMC Microbiology. 24, 13 p., 83.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)

    Behrendt, R. A., Toldam-Andersen, Torben, Arneborg, Nils, Collinge, David B. & Jensen, Birgit, 2024, Proceedings of the 21st International Conference on Organic Fruit- Growing. p. 51-57 7 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  13. 2023
  14. Published

    Universiteterne har brug for en reformpause

    Kropp, K., Vallgårda, Karen Asta Arnfred, Hougaard Laustsen-Kiel, A., Albrechtsen, Nicolai Jacob Wewer, Sylow, Lykke, Damgaard, R. B., Kristensen, Line Burholt, Hansen, N. C., Uusimäki, E., Jønsson, A. B., Høyland-Kroghsbo, Nina Molin, Eriksen, J. J., Rasmussen, Laura Vang, Andersen, P. E., Jensen, Louise Kruse, Lomborg, Stine, Morueta-Holme, Naia, Simonsen, K. B., Zetterberg-Nielsen, S. & Autzen, A., 29 Jan 2023, In: Berlingske Tidende.

    Research output: Contribution to journal › Contribution to newspaper - Comment/debate › Communication

  15. Published

    Pseudomonas nunensis sp. nov. isolated from a suppressive potato field in Greenland

    Ntana, F., Hennessy, Rosanna Catherine, Zervas, A. & Stougaard, P., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 2, 8 p., 005700.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro

    Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Airborne methicillin-resistant Staphylococcus aureus, other bacteria, fungi, endotoxin, and dust in a pigeon exhibition

    Madsen, A. M., Zhang, F., Zeng, Y. & Frederiksen, M. W., 2023, In: Environmental Research. 216, 7 p., 114642.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Alternative plant protection strategies for tomorrow's coffee

    Koutouleas, Tina, Collinge, David B. & Ræbild, Anders, 2023, In: Plant Pathology. 72, 3, p. 409-429

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette

    Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Bacterial dual phototrophy was demystified

    Zeng, Y., 2023, In: Trends in Microbiology. 31, 4, p. 326-328 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Bacteriophages Targeting both Pathogenic and Commensal Plant-Associated Bacteria

    Djurhuus, Amaru Miranda, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 132 p.

    Research output: Book/Report › Ph.D. thesis › Research

  23. Published

    Biochar assisted soil quality recovery in chromated copper arsenate contaminated soil

    Tang, Yinqi, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 268 p.

    Research output: Book/Report › Ph.D. thesis › Research

  24. Published

    Biocontrol effect of Clonostachys rosea on Fusarium graminearum infection and mycotoxin detoxification in oat (Avena sativa)

    Khairullina, A., Micic, Nikola, Jørgensen, Hans Jørgen Lyngs, Bjarnholt, Nanna, Bülow, L., Collinge, David B. & Jensen, Birgit, 2023, In: Plants. 12, 3, 16 p., 500.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Biological control of Zymoseptoria tritici in wheat

    Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit, Latz, Meike, Jørgensen, L., Heick, T. M. & Collinge, David B., 2023. 1 p.

    Research output: Contribution to conference › Poster › Research

  26. Published

    CRISPR-Cas provides limited phage immunity to a prevalent gut bacterium in gnotobiotic mice

    Rasmussen, Torben Sølbeck, Koefoed, A. K., Deng, Ling, Muhammed, Musemma Kedir, Rousseau, G. M., Kot, Witold, Sprotte, S., Neve, H., Franz, C. M. A. P., Hansen, Axel Kornerup, Vogensen, Finn Kvist, Moineau, S. & Nielsen, Dennis Sandris, 2023, In: ISME Journal. 17, p. 432–442

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Cessation of grazing causes biodiversity loss and homogenization of soil food webs

    Schrama, M., Quist, C. W., Arjen De Groot, G., Cieraad, E., Ashworth, D., Laros, I., Hansen, Lars Hestbjerg, Leff, J., Fierer, N. & Bardgett, R. D., 2023, In: Proceedings of the Royal Society B: Biological Sciences. 290, 2011, 12 p., 20231345.

    Research output: Contribution to journal › Journal article › Research › peer-review

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