Microbial Ecology and Biotechnology

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  1. 2018
  2. Published

    Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production

    Schluter, L., David, G. S., Jørgensen, Niels O. G., Podduturi, Raju, Tucci, A., Dias, A. S. & da Silva, R. J., 2018, In: Aquaculture Environment Interactions. 10, p. 35-48 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Community dispersal: Developing and applying a novel method to explore the dispersal potential of bacterial communities from environmental samples

    Krüger, U. S., 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  4. Published

    Conidia-based fluorescence quantification of Streptomyces

    Podduturi, Raju & Jørgensen, Niels O. G., 2018, In: Journal of Microbiological Methods. 153, p. 104-107 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS

    Podduturi, Raju, Clausen, N., Petersen, N. B., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2018, Flavour Science: Proceedings of the XV Weurman Flavour Research Symposium. Siegmund, B. & Leitner, E. (eds.). Verlag der Technische Universität Graz, p. 475-478 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  6. Published

    Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance

    Larsson, D. G. J., Andremont, A., Bengtsson-Palme, J., Brandt, K. K., Husman, A. M. D. R., Fagerstedt, P., Fick, J., Flach, C-F., Gaze, W. H., Kuroda, M., Kvint, K., Laxminarayan, R., Manaia, C. M., Nielsen, K. M., Plant, L., Ploy, M-C., Segovia, C., Simonet, P., Smalla, K., Snape, J. & 6 others, Topp, E., van Hengel, A. J., Verner-Jeffreys, D. W., Virta, M. P. J., Wellington, E. M. & Wernersson, A., 2018, In: Environment International. 117, p. 132-138

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Discovery and screening of novel metagenome-derived GH107 enzymes targeting sulfated fucans from brown algae

    Schultz-Johansen, M., Cueff, M., Hardouin, K., Jam, M., Larocque, R., Glaring, M. A., Herve, C., Czjzek, M. & Stougaard, P., 2018, In: FEBS Journal. 285, 22, p. 4281-4295

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Distribution of arsenic resistance genes in prokaryotes

    Ben Fekih, I., Zhang, C., Li, Y. P., Zhao, Y., Alwathnani, H. A., Saquib, Q., Rensing, C. & Cervantes, C., 2018, In: Frontiers in Microbiology. 9, p. 1-11 2473.

    Research output: Contribution to journal › Review › Research › peer-review

  9. Published

    Does Pseudomonas produce terpenes? Characterization of terpene synthases from Pseudomonas

    Podduturi, Raju, Hennessy, Rosanna Catherine, Petersen, Mikael Agerlin, Stougaard, P. & Jørgensen, Niels O. G., 2018.

    Research output: Contribution to conference › Poster › Research › peer-review

  10. Published

    Draft Genome Sequence of a Novel Serratia sp. Strain with Antifungal Activity

    Dichmann, S. I., Park, B., Pathiraja, D., Choi, I., Stougaard, P. & Hennessy, Rosanna Catherine, 2018, In: Microbiology resource announcements. 7, 22, p. 1-2 e01340-18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Evolution of the bacterial Cu resistome as revealed by comparative genomics

    Qin, Y., 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  12. Published

    First report of Neonectria neomacrospora on Abies concolor in Finland

    Uimari, A., Poteri, M., Vuorinen, M. & Nielsen, Knud Nor, 2018, In: New Disease Reports. 38, 1, p. 3 1 p.

    Research output: Contribution to journal › Comment/debate › Research

  13. Published

    Fungal communities associated with species of Fraxinus tolerant to ash dieback, and their potential for biological control

    Kosawang, Chatchai, Amby, Daniel Buchvaldt, Bussaban, B., McKinney, L. V., Xu, Jing, Kjær, Erik Dahl, Collinge, David B. & Nielsen, Lene Rostgaard, 2018, In: Fungal Biology. 122, 2-3, p. 110-120 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Insights into mixed contaminants interactions and its implication for heavy metals and metalloids mobility, bioavailability and risk assessment

    Cipullo, S., Snapir, B., Tardif, S., Campo, P., Prpich, G. & Coulon, F., 2018, In: Science of the Total Environment. 645, p. 662-673

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples

    Jacobsen, C. S., Nielsen, T. K., Vester, J. K., Stougaard, P., Nielsen, J. L., Voriskova, J., Winding, A., Baldrian, P., Liu, B., Frostegard, A., Pedersen, D., Tveit, A. T., Svenning, M. M., Tebbe, C. C., Ovreas, L., Jakobsen, P. B., Blazewicz, S. J., Hubablek, V., Bertilsson, S., Hansen, L. H. & 4 others, Cary, S. C., Holben, W. E., Ekelund, Flemming & Bælum, J., 2018, In: Scientific Reports. 8, p. 1-6 6 p., 5711.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Long-term fertilisation form, level and duration affect the diversity, structure and functioning of soil microbial communities in the field

    van der Bom, Frederik, Nunes, I., Raymond, Nelly Sophie, Hansen, Veronika, Bonnichsen, L., Magid, Jakob, Nybroe, O. & Jensen, Lars Stoumann, 2018, In: Soil Biology & Biochemistry. 122, p. 91-103 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages

    Jacquiod, S., Nunes, I., Brejnrod, A., Hansen, M. A., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2018, In: Microbiome. 6, p. 1-14 223.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Novel method reveals a narrow phylogenetic distribution of bacterial dispersers in environmental communities exposed to low-hydration conditions

    Krüger, U. S., Bak, Frederik, Aamand, J., Nybroe, O., Badawi, N., Smets, B. F. & Dechesne, A., 2018, In: Applied and Environmental Microbiology. 84, 7, 16 p., e02857-17.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Part by Part: Synthetic Biology Parts Used in Solventogenic Clostridia

    Gyulev, I. S., Willson, B. J., Hennessy, Rosanna Catherine, Krabben, P., Jenkinson, E. R. & Thomas, G. H., 2018, In: A C S Synthetic Biology. 7, 2, p. 311-327 17 p.

    Research output: Contribution to journal › Review › Research › peer-review

  20. Published

    Seed coating with the fungal biocontrol agent Clonostachys rosea controls clubroot in oilseed rape

    Andersen, C. B., Jørgensen, Hans Jørgen Lyngs, Manzotti, A. & Jensen, Birgit, 2018, In: IOBC-WPRS Bulletin. 136, p. 157-163 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota

    Svenningsen, N. B., Watts-Williams, S. J., Joner, E. J., Battini, F., Efthymiou, A., Cruz Paredes, C., Nybroe, O. & Jakobsen, Iver, 2018, In: I S M E Journal. 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids

    Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.

    Research output: Working paper › Preprint › Research

  23. Published

    The biofilm matrix polysaccharides cellulose and alginate both protect Pseudomonas putida mt-2 against reactive oxygen species generated under matric stress and copper exposure

    Svenningsen, N. B., Martinez-Garcia, E., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2018, In: Microbiology. 164, 6, p. 883-888 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    The microbial cycling of phosphorus on long-term fertilized soil: insights from phosphate oxygen isotope ratios

    Bi, Q., Zheng, B., Lin, X., Li, K., Liu, X., Hao, X., Zhang, H., Zhang, J., Jaisi, D. P. & Zhu, Y., 2018, In: Chemical Geology. 483, p. 56-64

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    The roles of mycorrhiza and Penicillium inoculants in phosphorus uptake by biochar-amended wheat

    Efthymiou, A., Jensen, Birgit & Jakobsen, Iver, 2018, In: Soil Biology & Biochemistry. 127, p. 168-177

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    Tracking antibiotic resistome during wastewater treatment using high throughput quantitative PCR

    An, X., Su, J., Li, B., Ouyang, W., Zhao, Y., Chen, Q., Cui, L., Chen, H., Gillings, M. R., Zhang, T. & Zhu, Y., 2018, In: Environment International. 117, p. 146-153

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    Transgenic crops and beyond: how can biotechnology contribute to the sustainable control of plant diseases?: Biotechnology for plant disease control: GMOs and beyond

    Collinge, David B., 2018, In: European Journal of Plant Pathology. 152, 4, p. 977-986 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. 2017
  29. Published

    Imaging transcription during microbe-microbe interactions

    Hennessy, Rosanna Catherine, Olsson, S. & Stougaard, P., 13 Nov 2017, p. 79-79.

    Research output: Contribution to conference › Poster › Research › peer-review

  30. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Azadirachta indica reduces black sigatoka in east african highland banana by direct antimicrobial effects against Mycosphaerella fijiensis without inducing resistance

    Kumakech, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Edema, R. & Okori, P., 2017, In: Journal of Agricultural Science. 9, 4, p. 61-76 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil

    Zheng, B. X., Bi, Q. F., Hao, X., Zhou, G. W. & Yang, X. R., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 8, p. 2514-2519 6 p., 001916.

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    Paraglaciecola hydrolytica sp nov., a bacterium with hydrolytic activity against multiple seaweed-derived polysaccharides

    Bech, P. K., Schultz-Johansen, M., Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 7, p. 2242-2247 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Pararhizobium antarcticum sp nov., isolated from Antarctic water samples

    Naqvi, S. U., Qin, Y., Tahir, A. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, p. 1650-1655 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Serendipita indica provides resilience against salinity stress in tomato

    Koutouleas, Tina, Manzotti, A., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017.

    Research output: Contribution to conference › Poster › Research

  37. Published

    A microplate reader-based system for visualizing transcriptional activity during in vivo microbial interactions in space and time

    Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 2017, In: Scientific Reports. 7, 6 p., 281.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Adhesion to sand and ability to mineralise low pesticide concentrations are required for efficient bioaugmentation of flow-through sand filters

    Samuelsen, E. D., Badawi, N., Nybroe, O., Sørensen, S. R. & Aamand, J., 2017, In: Applied Microbiology and Biotechnology. 101, 1, p. 411-421 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    An underappreciated hotspot of antibiotic resistance: the groundwater near the municipal solid waste landfill

    Chen, Q., Li, H., Zhou, X., Zhao, Y., Su, J., Zhang, X. & Huang, F., 2017, In: Science of the Total Environment. 609, p. 966-973 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Arctic Biotechnology – Sustainable Products and Processes from Arctic Biological Resources

    Thøgersen, M. S., Hennessy, Rosanna Catherine & Stougaard, P., 2017.

    Research output: Contribution to conference › Poster › Research

  41. Published

    Biocide runoff from building facades: degradation kinetics in soil

    Bollmann, U. E., Fernandez Calviño, D., Brandt, Kristian Koefoed, Storgaard, M. S., Sanderson, H. & Bester, K., 2017, In: Environmental Science & Technology (Washington). 51, 7, p. 3694-3702 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Biosynthesis of the antimicrobial cyclic lipopeptides nunamycin and nunapeptin by Pseudomonas fluorescens strain In5 is regulated by the LuxR-type transcriptional regulator NunF

    Hennessy, Rosanna Catherine, Phippen, C. B. W., Nielsen, K. F., Olsson, S. & Stougaard, P., 2017, In: MicrobiologyOpen. 6, 6, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Changes in free amino acid content during naupliar development of the Calanoid copepod Acartia tonsa

    Rayner, T. A., Jørgensen, Niels O. G., Drillet, G. & Hansen, B. W., 2017, In: Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology. 210, p. 1-6 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    Comparison of metals and tetracycline as selective agents for development of tetracycline resistant bacterial communities in agricultural soil

    Song, J., Rensing, C., Holm, Peter Engelund, Virta, M. & Brandt, Kristian Koefoed, 2017, In: Environmental Science & Technology (Washington). 51, 5, p. 3040-3047 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Constructing and screening a metagenomic library of a cold and alkaline extreme environment

    Glaring, M. A., Vester, J. K. & Stougaard, P., 2017, Metagenomics. Streit, W. R. & Daniel, R. (eds.). Springer, p. 43-55 13 p. (Methods in Molecular Biology, Vol. 1539).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  46. Published

    Discovery of novel algae-degrading enzymes from marine bacteria

    Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine & Stougaard, P., 2017.

    Research output: Contribution to conference › Poster › Research

  47. Published

    Ecotoxicological assessment of propiconazole using soil bacterial and fungal growth assays

    Fernandez Calviño, D., Rousk, J., Baath, E., Bollmann, U. E., Bester, K. & Brandt, Kristian Koefoed, 2017, In: Agriculture, Ecosystems & Environment. 115, p. 27-30

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Effects of Metals on Antibiotic Resistance and Conjugal Plasmid Transfer in Soil Bacterial Communities

    Song, J., 2017, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 119 p.

    Research output: Book/Report › Ph.D. thesis › Research

  49. Published

    Effects of two different high-fidelity DNA polymerases on genetic analysis of the cyanobacterial community structure in a subtropical deep freshwater reservoir

    Zhen, Z., Liu, J., Rensing, C. G. T., Yan, C. & Zhang, Y., 2017, In: Archives of Microbiology. 199, 1, p. 125-134 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Endophytes for biological control of Septoria tritici blotch of wheat

    Latz, Meike, Seeliger, M., Collinge, David B., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017.

    Research output: Contribution to conference › Poster › Research

  51. Published

    Fight fungi with fungi: endophytes as biocontrol agents on wheat

    Rojas Tayo, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Henriksson, T., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 99 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  52. Published

    Fungal endophytes – the hidden inducers of volatile terpene biosynthesis in tomato plants

    Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Cernava, T., Berg, G. & Hamberger, B., 2017.

    Research output: Contribution to conference › Conference abstract for conference › Research

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