- 2020
- Published
Identification and Characterization of a β-N-Acetylhexosaminidase with a Biosynthetic Activity from the Marine Bacterium Paraglaciecola hydrolytica S66T
Visnapuu, T., Teze, D., Kjeldsen, C., Lie, A., Duus, J. Ø., André-Miral, C., Pedersen, L. H., Stougaard, P. & Svensson, B., 2020, In: International Journal of Molecular Sciences (Online). 21, 2, 22 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of Root-Associated Bacteria That Influence Plant Physiology, Increase Seed Germination, or Promote Growth of the Christmas Tree Species Abies nordmanniana
Garcia-Lemos, A. M., Grosskinsky, D. K., Akhtar, S. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Nybroe, O. & Veierskov, Bjarke, 2020, In: Frontiers in Microbiology. 11, 15 p., 566613.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach
Latz, Meike, Jensen, Birgit, Collinge, David B. & Jørgensen, Hans Jørgen Lyngs, 2020, In: Biological Control. 141, p. 1-8 104128.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios
Braga, L. P. P., Spor, A., Kot, Witold, Breuil, M., Hansen, Lars Hestbjerg, Setubal, J. C. & Philippot, L., 2020, In: Microbiome. 8, 1, 14 p., 52.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
Aguilar, M. O., Gobbi, Alex, Browne, Patrick Denis, Ellegaard-Jensen, L., Hansen, Lars Hestbjerg, Semorile, L. & Pistorio, M., 2020, In: PLoS ONE. 15, 12, 19 p., 0243848.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling
Manzotti, A., Bergna, A., Burow, Meike, Jørgensen, Hans Jørgen Lyngs, Cernava, T., Berg, G., Collinge, David B. & Jensen, Birgit, 2020, In: FEMS Microbiology Ecology. 96, 5, 16 p., fiaa052.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrating bioinformatics in the teaching and redesign of the course Applied Microbiology
Hennessy, Rosanna Catherine, 2020, Improving University Science Teaching and Learning: Pedagogical Projects 2020. Christiansen, F. V. & Arias, A. A. (eds.). Department of Science Education, University of Copenhagen, Vol. 15. p. 147-167 21 p. (Improving University Science Teaching and Learning - Pedagogical Projects, Vol. 15).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research
- Published
Interaction between endophytic Proteobacteria strains and Serendipita indica enhances biocontrol activity against fungal pathogens
del Barrio-Duque, A., Samad, A., Nybroe, O., Antonielli, L., Sessitsch, A. & Compant, S., 2020, In: Plant and Soil. 451, 1-2, p. 277-305 29 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inulin and milk mineral fortification of a pork sausage exhibits distinct effects on the microbiome and biochemical activity in the gut of healthy rats
Thøgersen, R., Castro-Mejía, J. L., Sundekilde, U. K., Hansen, Lars Hestbjerg, Gray, N., Kuhnle, G., Jørgensen, Niklas Rye, Hansen, Axel Kornerup, Nielsen, Dennis Sandris & Bertram, H. C., 2020, In: Food Chemistry. 331, 10 p., 127291.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Isolation and characterisation of novel phages infecting Lactobacillus plantarum and proposal of a new genus, "Silenusvirus"
Kyrkou, I., Carstens, Alexander Byth, Ellegaard-Jensen, L., Kot, Witold, Zervas, A., Djurhuus, Amaru Miranda, Neve, H., Franz, C. M. A. P., Hansen, M. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 10 p., 8763.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial resistome
Rutgersson, C., Ebmeyer, S., Lassen, Simon Bo, Karkman, A., Fick, J., Kristiansson, E., Brandt, Kristian Koefoed, Flach, C. & Larsson, D. G. J., 2020, In: Environment International. 137, 12 p., 105339.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mechanisms of Pathogenicity
Collinge, David B. & Taylor, P., 2020, Fungal-Like Plant Pathogens. CABI International, p. 185-204 20 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function: [incl. Erratum]
Reddington, K., Eccles, D., O'Grady, J., Drown, D. M., Hansen, L. H., Nielsen, T. K., Ducluzeau, A-L., Leggett, R. M., Heavens, D., Peel, N., Snutch, T. P., Bayega, A., Oikonomopoulos, S., Ragoussis, J., Barry, T., van der Helm, E., Jolic, D., Richardson, H., Jansen, H., Tyson, J. R. & 2 others, , 2020, In: GigaScience. 9, 6, 12 p., 053.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Occurrence of cyanobacteria and microcystins in hydroelectric reservoirs used for fish farming
Falcone-Dias, M. F., Rodrigues, M. V., Nielsen, J. L., De Jonge, N., Jørgensen, Niels O. G., Alonso, D. P., David, G. S., Da Silva, R. J. & Araújo, J. P., 2020, In: Journal of Water and Health. 18, 6, p. 983-994 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae
Pedersen, Julie Stenberg, Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold, Neve, H. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 237-244 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Physical fitness in community-dwelling older adults is linked to dietary intake, gut microbiota, and metabolomic signatures
Castro-Mejia, J. L., Khakimov, B., Krych, L., Bülow, J., Bechshøft, R. L., Højfeldt, G., Mertz, K. H., Garne, E. S., Schacht, S. R., Ahmad, H. F., Kot, W., Hansen, L. H., Perez-Cueto, F. J. A., Lind, M. V., Lassen, A. J., Tetens, I., Jensen, T., Reitelseder, S., Jespersen, A. P., Holm, L. & 2 others, , 2020, In: Aging Cell. 19, 3, 13 p., e13105.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant Disease Management in the Post-genomic Era: From Functional Genomics to Genome Editing
Sarrocco, S., Herrera-estrella, A. & Collinge, David B., 2020, In: Frontiers in Microbiology. 11, p. 1-2 107.Research output: Contribution to journal › Editorial › Research › peer-review
- Published
Plant Endophytes
Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Rojas, E. C., Latz, Meike, Manzotti, A., Ntana, F. & Jensen, Birgit, 2020, eLS. Wiley, 9 p. (eLS).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Plant Pathology and Plant Diseases
Tronsmo, A. M., Collinge, David B., Djurle, A., Munk, Lisa, Yuen, J. & Tronsmo, A., 2020, CABI Publishing. 400 p.Research output: Book/Report › Book › Education › peer-review
- Published
Plant pathology in a changing world
Yuen, J., Collinge, David B., Djurle, A. & Tronsmo, A. M., 2020, Plant Pathology and Plant Diseases. CABI International, p. 379-386 8 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Potential Rhodopsin- and Bacteriochlorophyll-Based Dual Phototrophy in a High Arctic Glacier
Zeng, Y., Chen, X., Madsen, A. M., Zervas, A., Nielsen, Tue Kjærgaard, Andrei, A., Lund-Hansen, L. C., Liu, Y. & Hansen, Lars Hestbjerg, 2020, In: mBio. 11, 6, 22 p., e02641-20.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Potential feedback mediated by soil microbiome response to warming in a glacier forefield
Wang, Y., Ma, A., Liu, G., Ma, J., Wei, J., Zhou, H., Brandt, Kristian Koefoed & Zhuang, G., 2020, In: Global Change Biology. 26, 2, p. 697-708Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Presentation of Three Novel Tailed Phages Targeting Multiple Strains of Pseudomonas syringae
Jørgensen, J. B., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Kot, Witold, Neve, H., Morris, C. E. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 245-250 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pretreatment Prevotella-to-Bacteroides ratio and salivary amylase gene copy number as prognostic markers for dietary weight loss
Hjorth, Mads Fiil, Christensen, Lars, Larsen, T. M., Roager, Henrik Munch, Krych, Lukasz, Kot, Witold, Nielsen, Dennis Sandris, Ritz, C. & Astrup, A., 2020, In: American Journal of Clinical Nutrition. 111, 5, p. 1079-1086 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Releasing the microbes from old bones: the effect of different DNA extraction protocols on microbial community profiling
Eriksen, A. M. H., Puetz, Lara Christine, Rocha, C., Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Gilbert, M Thomas P, 2020, In: STAR: Science & Technology of Archaeological Research. 6, 1, p. 1-15 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Restitution of gut microbiota in Ugandan children administered with probiotics (Lactobacillus rhamnosus GG and Bifidobacterium animalis subsp. lactis BB-12) during treatment for severe acute malnutrition
Castro-Mejía, J. L., O’Ferrall, S., Krych, Lukasz, O’Mahony, E., Namusoke, H., Lanyero, B., Kot, Witold, Nabukeera-Barungi, N., Michaelsen, Kim F., Mølgaard, Christian, Friis, Henrik, Grenov, Benedikte & Nielsen, Dennis Sandris, 2020, In: Gut Microbes. 11, 4, p. 855-867 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seasonal epiphytic microbial dynamics on grapevine leaves under biocontrol and copper fungicide treatments
Gobbi, Alex, Kyrkou, I., Filippi, E., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 13 p., 681.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seed inoculation with Penicillium bilaiae and Bacillus simplex affects the nutrient status of winter wheat
Hansen, Veronika, Bonnichsen, L., Nunes, I., Sexlinger, K., Lopez, S. R., van der Bom, Frederik, Nybroe, O., Nicolaisen, Mette Haubjerg & Jensen, Lars Stoumann, 2020, In: Biology and Fertility of Soils. 56, 1, p. 97-109Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Selection of fungal endophytes with biocontrol potential against Fusarium head blight in wheat
Rojas, E. C., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Latz, Meike, Esteban, P., Ding, Y. & Collinge, David B., 2020, In: Biological Control. 144, 9 p., 104222.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial and temporal variability of cyanobacteria in two subtropical reservoirs: community composition, molecular and cyanotoxin analyses
De Almeida Bispo Moraes, M., 2020, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 128 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin
Hao, X., Zhu, Y., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2020, In: Frontiers in Microbiology. 10, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements
Browne, Patrick Denis, Kot, Witold, Jørgensen, T. S. & Hansen, Lars Hestbjerg, 2020, Horizontal Gene Transfer: Methods and Protocols. Cruz, F. D. L. (ed.). Humana Press, p. 253-264 (Methods in Molecular Biology, Vol. 2075).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
The environmental occurrence of Pseudomonas aeruginosa
Crone, S., Vives-Flórez, M., Kvich, Lasse Andersson, Saunders, A. M., Malone, M., Nicolaisen, Mette Haubjerg, Martínez-García, E., Rojas-Acosta, C., Catalina Gomez-Puerto, M., Calum, Henrik Pierre, Whiteley, M., Kolter, R. & Bjarnsholt, Thomas, 2020, In: APMIS. 128, 3, p. 220-231Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transglycosylating β-d-galactosidase and α-l-fucosidase from Paenibacillus sp. 3179 from a hot spring in East Greenland
Thøgersen, M. S., Christensen, S. J., Jepsen, M., Pedersen, L. H. & Stougaard, P., 2020, In: MicrobiologyOpen. 9, 3, 15 p., e980.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two New Dickeya dadantii Phages with Odd Growth Patterns Expand the Diversity of Phages Infecting Soft Rot Pectobacteriaceae
Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Neve, H., Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 251-259 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Two novel bacteriophage genera from a groundwater reservoir highlight subsurface environments as underexplored biotopes in bacteriophage ecology
Hylling, O., Carstens, Alexander Byth, Kot, Witold, Hansen, M., Neve, H., Franz, C. M. A. P., Johansen, A., Ellegaard-Jensen, L. & Hansen, Lars Hestbjerg, 2020, In: Scientific Reports. 10, 1, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development
Garcia-Lemos, A. M., Gobbi, Alex, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 17 p., 198.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unravelling plasmidome distribution and interaction with its hosting microbiome
Kav, A. B., Rozov, R., Bogumil, D., Sørensen, Søren Johannes, Hansen, Lars Hestbjerg, Benhar, I., Halperin, E., Shamir, R. & Mizrahi, I., 2020, In: Environmental Microbiology. 22, 1, p. 32-44Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation
Hylling, O., Nikbakht Fini, M., Ellegaard-Jensen, L., Muff, J., Madsen, H. T., Aamand, J. & Hansen, Lars Hestbjerg, 1 Dec 2019, In: Science of the Total Environment. 694, p. 1-12 133710.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal pollution and co-selection for antibiotic resistance: A microbial palaeontology approach
Dickinson, A. W., Power, A., Hansen, M. G., Brandt, Kristian Koefoed, Piliposian, G., Appleby, P., O'Neill, P. A., Jones, R. T., Sierocinski, P., Koskella, B. & Vos, M., Nov 2019, In: Environment International. 132, p. 1-10 105117.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomics of Aerobic Photoheterotrophs in Wheat Phyllosphere Reveals Divergent Evolutionary Patterns of Photosynthetic Genes in Methylobacterium spp
Zervas, A., Zeng, Y., Madsen, A. M. & Hansen, Lars Hestbjerg, 1 Oct 2019, In: Genome Biology and Evolution. 11, 10, p. 2895-2908Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Soil biota, antimicrobial resistance and planetary health
Zhu, Y. G., Zhao, Y., Zhu, D., Gillings, M., Penuelas, J., Ok, Y. S., Capon, A. & Banwart, S., Oct 2019, In: Environment International. 131, p. 1-7 105059.Research output: Contribution to journal › Review › Research › peer-review
- Published
Grey water treatment in stacked multi-layer reactors with passive aeration and particle trapping
Prajapati, B., Jensen, Marina Bergen, Jørgensen, Niels O. G. & Petersen, N. B., 15 Sep 2019, In: Water Research. 161, p. 181-190Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Heavy metal-induced co-selection of antibiotic resistance genes in the gut microbiota of collembolans
Ding, J., An, X. L., Lassen, Simon Bo, Wang, H. T., Zhu, D. & Ke, X., 15 Sep 2019, In: Science of the Total Environment. 683, p. 210-215Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effects of biochar amendments on antibiotic resistome of the soil and collembolan gut
Ding, J., Yin, Y., Sun, A. Q., Lassen, Simon Bo, Li, G., Zhu, D. & Ke, X., 5 Sep 2019, In: Journal of Hazardous Materials. 377, p. 186-194Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Root-Associated Microbial Communities of Abies nordmanniana: Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth
Garcia-Lemos, A. M., Großkinsky, D. K., Stokholm, M. S., Lund, O. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., Aug 2019, In: Frontiers in Microbiology. 10, p. 1-16 1937.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Imaging Gene Expression Dynamics in Pseudomonas fluorescens In5 during Interactions with the Fungus Fusarium graminearum PH-1
Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 20 Jun 2019, In: Bio-protocol. 9, 12, 14 p., e3264.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
RNA Stable Isotope Probing of Potential Feammox Population in Paddy Soil
Li, H., Su, J. Q., Yang, X. R., Zhou, G. W., Lassen, Simon Bo & Zhu, Y. G., 7 May 2019, In: Environmental Science and Technology. 53, 9, p. 4841-4849Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions
Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold & Hansen, Lars Hestbjerg, 1 May 2019, In: FEMS Microbiology Letters. 366, 9, p. 1-8 fnz101.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Detection of saxitoxin-producing cyanobacteria in subtropical Brazilian drinking water supply reservoir by quantitative PCR
De Almeida Bispo Moraes, M., Rodrigues, R. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., May 2019.Research output: Contribution to conference › Poster › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
Research output: Contribution to journal › Journal article › Research › peer-review
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The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
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Wine Yeast as Potential Biological Control Agent Against Downy Mildew of Grapevine (Plasmopara viticola)
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Randomised, Placebo-Controlled Investigation of the Impact of Probiotic Consumption on Gut Microbiota Diversity and the Faecal Metabolome in Seniors
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