Microbial Ecology and Biotechnology

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  1. Published

    Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue

    Schostag, M. D., Gobbi, Alex, Fini, M. N., Ellegaard-Jensen, L., Aamand, J., Hansen, Lars Hestbjerg, Muff, J. & Albers, C. N., 2022, In: Water Research. 216, 12 p., 118352.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Community dispersal: Developing and applying a novel method to explore the dispersal potential of bacterial communities from environmental samples

    Krüger, U. S., 2018, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  3. Published

    Compaction stimulates denitrification in an urban park soil using 15N tracing technique

    Li, S., Deng, H., Rensing, C. G. T. & Zhu, Y. G., 2014, In: Environmental Science and Pollution Research. 21, 5, p. 3783-3791 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Comparative Genomic Analysis of Fusobacterium necrophorum Provides Insights into Conserved Virulence Genes

    Bista, P. K., Pillai, D., Roy, C., Scaria, J. & Narayanan, S. K., 2022, In: Microbiology Spectrum. 10, 6, 18 p., e00297-22.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture

    Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  6. Published

    Comparison of metals and tetracycline as selective agents for development of tetracycline resistant bacterial communities in agricultural soil

    Song, J., Rensing, C., Holm, Peter Engelund, Virta, M. & Brandt, Kristian Koefoed, 2017, In: Environmental Science & Technology (Washington). 51, 5, p. 3040-3047 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Competitive adsorption/desorption of tetracycline, oxytetracycline and chlortetracycline on two acid soils: stirred flow chamber experiments

    Fernandez Calviño, D., Bermudez-Couso, A., Arias-Estevez, M., Carlos Novoa-Munoz, J., Fernandez-Sanjurjo, M. J., Alvarez-Rodriguez, E. & Nunez-Delgado, A., 2015, In: Chemosphere. 134, p. 361-366 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment

    Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Complete Genome Sequence of Paenibacillus sp. Strain 37, a Plant Growth-Promoting Bacterium Isolated from the Rhizosphere of Abies nordmanniana (Nordmann Fir)

    Garcia-Lemos, A. M., Hennessy, Rosanna Catherine, Nielsen, Tue Kjærgaard, Hansen, Lars Hestbjerg & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology Resource Announcements. 10, 8, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Complete Genome Sequence of Sphingopyxis sp. Strain PET50, a Potential Polyethylene Terephthalate (PET)-Degrading Bacterium Isolated from Compost

    Lago-Maciel, A., Nielsen, Tue Kjærgaard, Jensen, K., Nicolaisen, Mette Haubjerg & Hennessy, Rosanna Catherine, 2023, In: Microbiology Resource Announcements. 12, 1, 2 p., e0097022.

    Research output: Contribution to journal › Journal article › Research

  11. Published

    Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment

    Bak, Frederik, Henriksen, Alexander Pil, Nielsen, Tue Kjærgaard & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology resource announcements. 10, 44, 2 p., e0075421.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18

    Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Complete Genome Sequences of Highly Arsenite-Resistant Bacteria Brevibacterium sp. Strain CS2 and Micrococcus luteus AS2

    Sher, S., Rehman, A., Hansen, Lars Hestbjerg & Nielsen, Tue Kjærgaard, 2019, In: Microbiology Resource Announcements. 8, 31, 2 p., e00531-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Complete Genome Sequences of Three Lactiplantibacillus plantarum Strains Isolated from Traditional Iranian Raw Milk Motal Cheese

    Fatemizadeh, S. S., Krych, Lukasz, Castro-Mejía, J. L., Stefanova, Denitsa Vladimirova, Kot, Witold, Najafi, M. B. H. & Nielsen, Dennis Sandris, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0047922.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Complete Genome and Plasmid Sequences of Salmonella enterica subsp. enterica Serovar Enteritidis PT1, Obtained from the Salmonella Reference Laboratory at Public Health England, Colindale, United Kingdom

    Anwar, M. Z., Zervas, A., Hansen, Lars Hestbjerg, Barker, G., Anesio, A. M. & Jacobsen, C. S., 2020, In: Microbiology Resource Announcements. 9, 2, 2 p., ARTN e01064-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Computational Tools for the Analysis of Uncultivated Phage Genomes

    Andrade-Martínez, J. S., Camelo Valera, L. C., Chica Cárdenas, L. A., Forero Junco, Laura Milena, López-Leal, G., Moreno-Gallego, J. L., Rangel Piñeros, Guillermo Andres & Reyes, A., 2022, In: Microbiology and Molecular Biology Reviews. 86, 2, e0000421.

    Research output: Contribution to journal › Review › Research › peer-review

  17. Published

    Conidia-based fluorescence quantification of Streptomyces

    Podduturi, Raju & Jørgensen, Niels O. G., 2018, In: Journal of Microbiological Methods. 153, p. 104-107 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    Constructing and screening a metagenomic library of a cold and alkaline extreme environment

    Glaring, M. A., Vester, J. K. & Stougaard, P., 2017, Metagenomics. Streit, W. R. & Daniel, R. (eds.). Springer, p. 43-55 13 p. (Methods in Molecular Biology, Vol. 1539).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  19. Published

    Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS

    Podduturi, Raju, Clausen, N., Petersen, N. B., Jørgensen, Niels O. G. & Petersen, Mikael Agerlin, 2018, Flavour Science: Proceedings of the XV Weurman Flavour Research Symposium. Siegmund, B. & Leitner, E. (eds.). Verlag der Technische Universität Graz, p. 475-478 4 p.

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  20. Published

    Contribution of the seed microbiome to weed management

    Müller-Stöver, Dorette Sophie, Nybroe, O., Baraibar, B., Loddo, D., Eizenberg, H., French, K., Sønderskov, M., Neve, Paul, Peltzer, D. A., Maczey, N. & Christensen, Svend, 2016, In: Weed Research. 56, 5, p. 335-339 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure

    Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Copper content and distribution in vineyard soils from Betanzos (A Coruña, Spain)

    Gómez-Armesto, A., Carballeira-Díaz, J., Pérez-Rodríguez, P., Fernandez Calviño, D., Arias-Estévez, M., Nóvoa-Muñoz, J. C., Álvarez-Rodríguez, E., Fernández-Sanjurjo, M. J. & Núñez-Delgado, A., 2015, In: Spanish Journal of Soil Science. 5, 1, p. 60-71 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Copper tolerance mechanisms of Mesorhizobium amorphae and its role in aiding phytostabilization by Robinia pseudoacacia in copper contaminated soil

    Hao, X., Xie, P., Zhu, Y., Taghavi, S., Wei, G. & Rensing, C. G. T., 2015, In: Environmental Science & Technology (Washington). 49, 4, p. 2328-2340 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, Lars Hestbjerg, Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, Jakob Nybo, Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, Simon, Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, Søren Johannes, Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance

    Larsson, D. G. J., Andremont, A., Bengtsson-Palme, J., Brandt, K. K., Husman, A. M. D. R., Fagerstedt, P., Fick, J., Flach, C-F., Gaze, W. H., Kuroda, M., Kvint, K., Laxminarayan, R., Manaia, C. M., Nielsen, K. M., Plant, L., Ploy, M-C., Segovia, C., Simonet, P., Smalla, K., Snape, J. & 6 others, Topp, E., van Hengel, A. J., Verner-Jeffreys, D. W., Virta, M. P. J., Wellington, E. M. & Wernersson, A., 2018, In: Environment International. 117, p. 132-138

    Research output: Contribution to journal › Journal article › Research › peer-review

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