Microbial Ecology and Biotechnology

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  1. Published

    14-3-3 proteins: a highly conserved, widespread family of eukaryotic proteins

    Aitken, A., Collinge, David B., van Heusden, B. P. H., Isobe, T., Roseboom, P. H., Rosenfeld, G. & Soll, J., 1 Jan 1992, In: Trends in Biochemical Sciences. 17, 12, p. 498-501 4 p.

    Research output: Contribution to journal › Review › Research › peer-review

  2. Published

    2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem

    Qian, P., Gardiner, A. T., Šímová, I., Naydenova, K., Croll, T. I., Jackson, P. J., Nupur, Kloz, M., Čubáková, P., Kuzma, M., Zeng, Y., Castro-Hartmann, P., van Knippenberg, B., Goldie, K. N., Kaftan, D., Hrouzek, P., Hájek, J., Agirre, J., Siebert, C. A., Bína, D. & 7 others, Sader, K., Stahlberg, H., Sobotka, R., Russo, C. J., Polívka, T., Hunter, C. N. & Koblížek, M., 2022, In: Science Advances. 8, 7, 12 p., eabk3139.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    24 Messages on a Sustainable Career in Research at UCPH

    Larsen, K. R. (ed.), Wegener, H. C., Stein, A., Bach, A., Williams, A. R., Gall, C., Gravert, C., Gloriam, D. E., Lorenzen, E., Yvanez, E., Cappellini, E., Poulsen, F., Mortensen, J., Bentzen, J. S., Shik, J. Z., Miskowiak, K. W., Elgaard, K. K. E., Jønsson, K. A., Won, K. J., Nørgaard, L. C. & 9 others, Cantarero Arevalo, Lourdes, Kristiansen, Maria, Lund, Marianne N., Borregaard, Michael Krabbe, Høyland-Kroghsbo, Nina Molin, Iversen, Rune, Viskum, U., Nosch, Marie Louise Bech & Hjorth, Jens, 2020, University of Copenhagen. 31 p.

    Research output: Book/Report › Report › Communication

  4. Published

    In silico analysis of bacterial arsenic islands reveals remarkable synteny and functional relatedness between arsenate and phosphate

    Li, H., Li, M., Huang, Y., Rensing, C. G. T. & Wang, G., 2013, In: Frontiers in Microbiology. 4, 10 p., 347.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Azadirachta indica reduces black sigatoka in east african highland banana by direct antimicrobial effects against Mycosphaerella fijiensis without inducing resistance

    Kumakech, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Edema, R. & Okori, P., 2017, In: Journal of Agricultural Science. 9, 4, p. 61-76 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Clonostachys rosea reduces spot blotch in barley by inhibiting pre-penetration growth and sporulation of Bipolaris sorokiniana without inducing resistance

    Jensen, Birgit, Lübeck, P. S. & Jørgensen, Hans Jørgen Lyngs, 2016, In: Pest Management Science. 72, 12, p. 2231-2239 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Colwellia echini sp. nov., an agar- and carrageenan-solubilizing bacterium isolated from sea urchin

    Christiansen, L., Bech, P. K., Schultz-Johansen, M., Martens, Helle Jakobe & Stougaard, P., 2018, In: International Journal of Systematic and Evolutionary Microbiology. 68, 2, p. 687-691 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Fusarium diseases: biology and management perspectives

    Rojas Tayo, E. C., Jørgensen, Hans Jørgen Lyngs, Jensen, Birgit & Collinge, David B., 2019, Integrated disease management of wheat and barley. Burleigh Dodds Science Publishing Limited, Vol. 19. 23 p. (Burleigh Dodds series in agricultural science).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  10. Published

    In situ dynamics of O2, pH, light and photosynthesis in ikaite tufa columns (Ikka Fjord, Greenland) - a unique microbial habitat

    Trampe, Erik, Larsen, Jens Erik Nybo, Glaring, M. A., Stougaard, P. & Kühl, Michael, 2016, In: Frontiers in Microbiology. 7, 13 p., 722.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Massilia phosphatilytica sp. nov., a phosphate solubilizing bacteria isolated from a long-term fertilized soil

    Zheng, B. X., Bi, Q. F., Hao, X., Zhou, G. W. & Yang, X. R., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 8, p. 2514-2519 6 p., 001916.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Mesorhizobium intechi sp. nov. isolated from nodules of Lotus tenuis in soils of the Flooding Pampa, Argentina

    Julia Estrella, M., Florencia Fontana, M., Cumpa Velasquez, L. M., Torres Tejerizo, G. A., Diambra, L., Hansen, Lars Hestbjerg, Pistorio, M. & Ines Sannazzaro, A., 2020, In: Systematic and Applied Microbiology. 43, 1, 8 p., 126044.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Paraglaciecola hydrolytica sp nov., a bacterium with hydrolytic activity against multiple seaweed-derived polysaccharides

    Bech, P. K., Schultz-Johansen, M., Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, 7, p. 2242-2247 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Pararhizobium antarcticum sp nov., isolated from Antarctic water samples

    Naqvi, S. U., Qin, Y., Tahir, A. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, p. 1650-1655 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Pseudomonas nunensis sp. nov. isolated from a suppressive potato field in Greenland

    Ntana, F., Hennessy, Rosanna Catherine, Zervas, A. & Stougaard, P., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 2, 8 p., 005700.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response

    Svenningsen, N. B., Pérez-Pantoja, D., Nikel, P. I., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2015, In: BMC Microbiology. 15, 11 p., 202.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Pseudomonas Lipopeptide Biosurfactants: Roles in Pollutant Biodegradation and Biofilm Formation

    Bonnichsen, L., 2015, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 105 p.

    Research output: Book/Report › Ph.D. thesis › Research

  18. Published

    Serendipita indica provides resilience against salinity stress in tomato

    Koutouleas, Tina, Manzotti, A., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2017.

    Research output: Contribution to conference › Poster › Research

  19. Published

    Serratia inhibens sp. nov., a new antifungal species isolated from potato (Solanum tuberosum)

    Hennessy, Rosanna Catherine, Dichmann, S. I., Martens, Helle Jakobe, Zervas, A. & Stougaard, P., 17 Jun 2020, In: International Journal of Systematic and Evolutionary Microbiology. 70, 7, p. 4204-4211 8 p., 004270.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    A 2-kb Mycovirus Converts a Pathogenic Fungus into a Beneficial Endophyte for Brassica Protection and Yield Enhancement

    Zhang, H., Xie, J., Fu, Y., Cheng, J., Qu, Z., Zhao, Z., Cheng, S., Chen, T., Li, B., Wang, Q., Liu, X., Tian, B., Collinge, David B. & Jiang, D., 2020, In: Molecular Plant. 13, 10, p. 1420-1433 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice

    Moreno-Indias, I., Lundberg, R., Krych, Lukasz, Metzdorff, S. B., Kot, Witold, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2020, In: Frontiers in Microbiology. 11, 15 p., 1336.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    A Multifunctional Polysaccharide Utilization Gene Cluster in Colwellia echini Encodes Enzymes for the Complete Degradation of κ-Carrageenan, ι-Carrageenan, and Hybrid β/κ-Carrageenan

    Christiansen, L., Pathiraja, D., Bech, P. K., Schultz-Johansen, M., Hennessy, Rosanna Catherine, Teze, D., Choi, I. & Stougaard, P., 2020, In: mSphere. 5, 1, 16 p., e00792-19.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential

    Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T

    Pathiraja, D., Christiansen, L., Park, B., Schultz-Johansen, M., Bang, G., Stougaard, P. & Choi, I. G., 2021, In: Applied and Environmental Microbiology. 87, 12, 19 p., e00230-21.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus

    Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  26. Published

    A broad-host range dual-fluorescence reporter system for gene expression analysis in Gram-negative bacteria

    Hennessy, Rosanna Catherine, Christiansen, L., Olsson, S. & Stougaard, P., 2018, In: Journal of Microbiological Methods. 144, p. 173-176 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  27. Published

    A cerato-platanin protein SsCP1 targets plant PR1 and contributes to virulence of Sclerotinia sclerotiorum

    Yang, G., Tang, L., Gong, Y., Xie, J., Fu, Y., Jiang, D., Li, G., Collinge, David B., Chen, W. & Cheng, J., 2018, In: New Phytologist. 217, 2, p. 739-755 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea

    Latz, Meike, Andersson, A., Brugel, S., Hedblom, M., Jurdzinski, K. T., Karlson, B., Lindh, M., Lycken, J., Torstensson, A. & Andersson, A. F., 2024, In: Scientific Data. 11, 9 p., 18.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination

    Song, J., Klümper, U., Riber, Leise, Dechesne, A., Smets, B. F., Sørensen, Søren Johannes & Brandt, Kristian Koefoed, 2020, In: FEMS Microbiology Ecology. 96, 11, 10 p., fiaa200.

    Research output: Contribution to journal › Journal article › Research › peer-review

  30. Published

    A flavonoid 7-O-methyltransferase is expressed in barely leaves in response to pathogen attack

    Christensen, Anders, Gregersen, P. L., Olsen, C. E. & Collinge, David B., 1 Jan 1998, In: Plant Molecular Biology. 36, 2, p. 219-227 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    A global microbiome survey of vineyard soils highlights the microbial dimension of viticultural terroirs

    Gobbi, Alex, Acedo, A., Imam, N., Santini, R. G., Ortiz-Alvarez, R., Ellegaard-Jensen, L., Belda, I. & Hansen, Lars Hestbjerg, 2022, In: Communications Biology . 5, 9 p., 241.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    A microplate reader-based system for visualizing transcriptional activity during in vivo microbial interactions in space and time

    Hennessy, Rosanna Catherine, Stougaard, P. & Olsson, S., 2017, In: Scientific Reports. 7, 6 p., 281.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    A non-antifungal rhizobacterium stimulates plant immunity to protect tomato and Kalanchoe against Fusarium oxysporum and wheat against Zymoseptoria tritici

    Madriz Ordenana, Kenneth, Pazarlar, Sercan, Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Nielsen, K. L., Zhang, Y. & Thordal-Christensen, Hans, 2021. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  34. Published

    A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro

    Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    A novel enzyme portfolio for red algal polysaccharide degradation in the marine bacterium Paraglaciecola hydrolytica S66T encoded in a sizeable polysaccharide utilization locus

    Schultz-Johansen, M., Bech, P. K., Hennessy, Rosanna Catherine, Glaring, M. A., Barbeyron, T., Czjzek, M. & Stougaard, P., 2018, In: Frontiers in Microbiology. 9, 15 p., 839.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    A novel hybrid concept for implementation in drinking water treatment targets micropollutant removal by combining membrane filtration with biodegradation

    Hylling, O., Nikbakht Fini, M., Ellegaard-Jensen, L., Muff, J., Madsen, H. T., Aamand, J. & Hansen, Lars Hestbjerg, 1 Dec 2019, In: Science of the Total Environment. 694, p. 1-12 133710.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A novel microcosm to identify inherently competitive microorganisms with the ability to mineralize phytate in solum

    Pittroff, S. M., Olsson, S., Doolette, A., Greiner, R., Richardson, A. E. & Nicolaisen, Mette Haubjerg, 2021, In: Soil Ecology Letters. 3, p. 367-382

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    A novel six-phage cocktail reduces Pectobacterium atrosepticum soft rot infection in potato tubers under simulated storage conditions

    Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold & Hansen, Lars Hestbjerg, 1 May 2019, In: FEMS Microbiology Letters. 366, 9, p. 1-8 fnz101.

    Research output: Contribution to journal › Letter › Research › peer-review

  40. Published

    A novel transcription factor UvCGBP1 regulates development and virulence of rice false smut fungus Ustilaginoidea virens

    Chen, X., Li, P., Liu, H., Chen, X., Huang, J., Luo, C., Li, G., Hsiang, T., Collinge, David B. & Zheng, L., 2021, In: Virulence. 12, 1, p. 1563-1579 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    A pathogen-induced gene of barley encodes a HSP90 homologue showing striking similarity to vertebrate forms resident in the endoplasmic reticulum

    Walther-Larsen, H., Brandt, J., Collinge, David B. & Thordal-Christensen, Hans, 1 Mar 1993, In: Plant Molecular Biology. 21, 6, p. 1097-1108 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    A pathogen‐induced gene of barley encodes a protein showing high similarity to a protein kinase regulator

    Brandt, J., Thordal-Christensen, Hans, Vad, K., Gregersen, P. L. & Collinge, David B., 1 Jan 1992, In: The Plant Journal. 2, 5, p. 815-820 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    A putative O-methyltransferase from barley is induced by fungal pathogens and UV light

    Gregersen, P. L., Christensen, Anders, Sommer-Knudsen, J. & Collinge, David B., 1 Dec 1994, In: Plant Molecular Biology. 26, 6, p. 1797-1806 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    A revision of the history of the Colletotrichum acutatum species complex in the Nordic countries based on herbarium specimens.

    Sundelin, T., Strømeng, G. M., Gjærum, H. B., Amby, Daniel Buchvaldt, Ørstad, K., Jensen, Birgit, Lund, O. S. & Stensvand, A., 2015, In: F E M S Microbiology Letters. 362, 7 p., fnv130.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    A screening method for the isolation of bacteria capable of degrading toxic steroidal glycoalkaloids present in potato

    Hennessy, Rosanna Catherine, Jørgensen, Niels O. G., Scavenius, C., Enghild, J. J., Greve-Poulsen, M., Sørensen, O. B. & Stougaard, P., 2018, In: Frontiers in Microbiology. 9, p. 1-7 7 p., 2648.

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol

    Ntana, F., Bhat, W. W., Johnson, S. R., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Jensen, Birgit & Hamberger, B., 2021, In: Biomolecules. 11, 6, 16 p., 898.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    A simple model based on known plant defence reactions is sufficient to explain most aspects of nodulation

    Mellor, R. B. & Collinge, David B., 1 Jan 1995, In: Journal of Experimental Botany. 46, 1, p. 1-18 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Abundance and diversity of culturable Pseudomonas constitute sensitive indicators for adverse long-term copper impacts in soil

    Thorsen, M. K., Brandt, Kristian Koefoed & Nybroe, O., 2013, In: Soil Biology & Biochemistry. 57, p. 933-935 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Accumulation of a putative guanidine compound in relation to other early defence reactions in epidermal cells of barley and wheat exhibiting resistance to Erysiphe graminis f.sp. hordei

    Wei, Y. D., De Neergaard, E., Thordal-Christensen, Hans, Collinge, David B. & Smedegaard-Petersen, V., 1 Jan 1994, In: Physiological and Molecular Plant Pathology. 45, 6, p. 469-484 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Accumulation of defence-related transcripts and cloning of a chitinase mRNA from pea leaves (Pisum sativum L.) inoculated with Ascochyta pisi Lib.

    Vad, K., de Neergaard, E., Madriz Ordenana, Kenneth, Mikkelsen, J. D. & Collinge, David B., 1993, In: Plant Science. 92, 1, p. 69-79 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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