Microbial Ecology and Biotechnology

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  1. Published

    Spring freeze effect on wheat yield is modulated by winter temperature fluctuations: evidence from meta-analysis and simulating experiment

    Li, Xuan Ji, Cai, J., Liu, Fulai, Dai, T., Cao, W. & Jiang, D., 2015, In: Journal of Agronomy and Crop Science. 201, 4, p. 288-300 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    Draft Genome Sequence of Se(IV)-Reducing Bacterium Pseudomonas migulae ES3-33

    Li, Xuan Ji, Kot, W., Wang, D., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C., 2015, In: Genome Announcements. 3, 3, p. 1-2 2 p., e00406-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. Published

    Genes conferring copper resistance in Sinorhizobium meliloti CCNWSX0020 also promote growth of Medicago lupulina in copper contaminated soil

    Li, Z., Ma, Z., Rensing, C. G. T. & Wei, G., 2014, In: Applied and Environmental Microbiology. 80, 6, p. 1961-1971 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Carbon mineralization and microbial activity in agricultural topsoil and subsoil as regulated by root nitrogen and recalcitrant carbon concentrations

    Liang, Z., Elsgaard, L., Nicolaisen, Mette Haubjerg, Lyhne-Kjærbye, A. & Olesen, J. E., 1 Dec 2018, In: Plant and Soil. 433, 1-2, p. 65-82

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    An Oligosaccharide Rich Diet Increases Akkermansia spp. Bacteria in the Equine Microbiota

    Lindenberg, F. C., Lützhøft, Ditte Olsen, Krych, Lukasz, Fielden, J., Kot, Witold, Frøkiær, Hanne, van Galen, G., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2021, In: Frontiers in Microbiology. 12, 666039.

    Research output: Contribution to journal › Journal article › Research › peer-review

  6. Published

    Global regulator IscR positively contributes to antimonite resistance and oxidation in Comamonas testosteroni S44

    Liu, H., Zhuang, W., Zhang, S., Rensing, C. G. T., Huang, J., Li, J. & Wang, G., 2015, In: Frontiers in Bioscience. 2, 12 p., 70.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Toxicity: resistance pathways for metalloids and toxic metals

    Liu, Z., Rensing, C. G. T. & Rosen, B. P., 2013, Encyclopedia of inorganic and bioinorganic chemistry. Wiley

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  8. Published

    Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments

    Lukassen, M. B., Jonge, N. D., Bjerregaard, S. M., Podduturi, Raju, Jørgensen, Niels O. G., Petersen, Mikael Agerlin, David, G. S., da Silva, R. J. & Nielsen, J. L., 2019, In: Frontiers in Microbiology. 10, 12 p., 2447.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system

    Lukassen, M. B., Podduturi, Raju, Rohaan, B., Jørgensen, Niels O. G. & Nielsen, J. L., 1 Feb 2019, In: Aquaculture. 500, p. 170-177 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments

    Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Hallin, P. F., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2015, In: Genome Announcements. 3, 3, 2 p., e00585-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases

    Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Sanggaard, K. W., Vester, J. K., Enghild, J. J., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2016, In: Microbial Biotechnology. 9, 2, p. 245-256 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Spatiotemporal heterogeneity of nitrogen transformation potentials in a freshwater estuarine system

    Lv, Jiali, Wang, S., Liu, B. & Song, X., 2023, In: Science of the Total Environment. 859, Part 2, 160335.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    GUS and GFP transformation of the biocontrol strain Clonostachys rosea IK726 and the use of these marker genes in ecological studies

    Lübeck, M., Knudsen, I. M. B., Jensen, Birgit, Thrane, U., Janvier, C. & Jensen, Dan Funck, Jul 2002, In: Mycological Research.

    Research output: Contribution to journal › Journal article › Research › peer-review

  14. Published

    Genome sequences of two copper-resistant Escherichia coli strains isolated from copper-fed pigs

    Lüthje, F. L., Hasman, H., Aarestrup, F. M., Alwathnani, H. A. & Rensing, C. G. T., 2014, In: Genome Announcements. 2, 6, 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Marked gut microbiota dysbiosis and increased imidazole propionate are associated with a NASH Göttingen Minipig model

    Lützhøft, Ditte Olsen, Sinioja, T., Christoffersen, B., Jakobsen, Rasmus Riemer, Geng, Dawei, Ahmad, H. F. B., Straarup, E. M., Pedersen, K. M., Kot, Witold, Pedersen, H. D., Cirera, Susanna, Hyötyläinen, T., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: BMC Microbiology. 22, 1, 287.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Transformación genética de maiz: expresion del gene de la cubierta proteica viral (pMRFVcp-Bar) en plantas transgénicas como estrategia para la obtención de resistencia al virus del rayado fino

    Madriz Ordenana, Kenneth, Garita, H., Valdéz, M., Thordal-Christensen, Hans, Collinge, David B., Hammond, R. & Ramirez Fonseca, P., 1996, Universidad de Costa Rica : Centro de Investigacion en Biologia Celular y Molecular : [årsberetning 1996]. Universidad de Costa Rica, p. 30-31 2 p.

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication

  17. Published

    A non-antifungal rhizobacterium stimulates plant immunity to protect tomato and Kalanchoe against Fusarium oxysporum and wheat against Zymoseptoria tritici

    Madriz Ordenana, Kenneth, Pazarlar, Sercan, Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Nielsen, K. L., Zhang, Y. & Thordal-Christensen, Hans, 2021. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  18. Published

    Mechanical transmission of maize rayado fino marafivirus (MRFV) to maize and barley by means of the vascular puncture technique

    Madriz Ordenana, Kenneth, Rojas-Montero, R., Lundsgaard, T., Ramirez, P., Thordal-Christensen, Hans & Collinge, David B., Apr 2000, In: Plant Pathology. 49, 2, p. 302-307

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    The Bacillus cereus Strain EC9 Primes the Plant Immune System for Superior Biocontrol of Fusarium oxysporum

    Madriz Ordenana, Kenneth, Pazarlar, S., Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Zhang, Y., Nielsen, K. L., Hansen, Lars Hestbjerg & Thordal-Christensen, Hans, 2022, In: Plants. 11, 5, 19 p., 687.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Published

    The effect of faecal microbiota transplantation on abdominal pain, stool frequency, and stool form in patients with moderate-to-severe irritable bowel syndrome: results from a randomised, double-blind, placebo-controlled study

    Madsen, A. M. A., Halkjaer, S. I., Christensen, A. H., Guenther, S., Browne, Patrick Denis, Kallemose, T., Hansen, Lars Hestbjerg & Petersen, Andreas Munk, 2021, In: Scandinavian Journal of Gastroenterology. 56, 7, p. 761-769 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Airborne methicillin-resistant Staphylococcus aureus, other bacteria, fungi, endotoxin, and dust in a pigeon exhibition

    Madsen, A. M., Zhang, F., Zeng, Y. & Frederiksen, M. W., 2023, In: Environmental Research. 216, 7 p., 114642.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture

    Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).

    Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

  23. Published

    Effect of probiotic and sand filtration treatments on water quality and growth of tilapia (Oreochromis niloticus) and pangas (Pangasianodon hypophthalmus) in earthen ponds of southern Bangladesh

    Mahmud, S., Ali, M. L., Alam, M. A., Rahman, M. M. & Jørgensen, Niels O. G., 2016, In: Journal of Applied Aquaculture. 28, 3, p. 199-212 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Antibacterial activity of oxytetracycline on microbial ecology of Nile tilapia (Oreochromis niloticus) gastrointestinal tract under laboratory condition

    Mannan, M., Islam, S. R., Osman, M. H., Rahman, M. K., Uddin, M. N., Kamal, M. & Reza, M. S., 2020, In: Aquaculture Research. 51, 5, p. 2125-2133 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Exploring the endophytic fungal microbiome of tomato roots: The role of phytohormones in plant-endophyte interactions

    Manzotti, A., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    How do phytohormones influence the composition of fungal endophyte communities in tomato roots?

    Manzotti, A., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 124 1 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research

  27. Published

    Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling

    Manzotti, A., Bergna, A., Burow, Meike, Jørgensen, Hans Jørgen Lyngs, Cernava, T., Berg, G., Collinge, David B. & Jensen, Birgit, 2020, In: FEMS Microbiology Ecology. 96, 5, 16 p., fiaa052.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Phytohormones in plant-endophyte interactions: investigating the role of these compounds in the recruitment of tomato root fungal endophytes

    Manzotti, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Jensen, Birgit, 2017.

    Research output: Contribution to conference › Conference abstract for conference › Research

  29. Published

    Can phytohormones influence the composition of the endophytic microbiome in tomato roots?

    Manzotti, A., Bergna, A., Cernava, T., Berg, G., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2018, p. 218. 1 p.

    Research output: Contribution to conference › Conference abstract for conference › Research

  30. Published

    Species-specific content of As, Pb, and other elements in pangas (Pangasianodon hypophthalmus) and tilapia (Oreochromis niloticus) from aquaculture ponds in southern Bangladesh

    Marcussen, H., Alam, M. A., Rahman, M. M., Ali, M. L., Mahmud, S. & Jørgensen, Niels O. G., 2014, In: Aquaculture. 426-427, p. 85-87 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment

    Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data

    Mas-Sandoval, A., Pope, N. S., Nielsen, Knud Nor, Altinkaya, Isin, Fumagalli, M. & Korneliussen, Thorfinn Sand, 2022, In: GigaScience. 11, 9 p., giac032.

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Regulation of virulence properties in the fish pathogen Vibrio anguillarum: The role of prophages and quorum sensing

    Mauritzen, Jesper Juel, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 277 p.

    Research output: Book/Report › Ph.D. thesis › Research

  34. Published

    The ash dieback crisis: genetic variation in resistance can prove a long-term solution

    McKinney, L. V., Nielsen, Lene Rostgaard, Collinge, David B., Thomsen, Iben Margrete, Hansen, Jon Kehlet & Kjær, Erik Dahl, 2014, In: Plant Pathology. 63, 3, p. 485-499 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  35. Published

    Used Nasogastric Feeding Tubes from Neonates Contain Infant-Specific Bacterial Profiles

    Meinich Juhl, S., Angeliki Krogfelt, K., Kot, Witold, Nielsen, Dennis Sandris & Krych, Lukasz, 2023, In: Microorganisms. 11, 6, 11 p., 1365.

    Research output: Contribution to journal › Journal article › Research › peer-review

  36. Published

    Inoculation of tomato (Solanum lycopersicum) roots with growth promoting Pseudomonas strains induces distinct local and systemic metabolic biosignatures

    Mekureyaw, M. F., Beierholm, A. E., Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Physiological and Molecular Plant Pathology. 117, 10 p., 101757.

    Research output: Contribution to journal › Journal article › Research › peer-review

  37. Published

    The cytokinin-producing plant beneficial bacterium Pseudomonas fluorescens G20-18 primes tomato (Solanum lycopersicum) for enhanced drought stress responses

    Mekureyaw, M. F., Pandey, Chandana, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Liu, Fulai, Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Journal of Plant Physiology. 270, 15 p., 153629.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    A simple model based on known plant defence reactions is sufficient to explain most aspects of nodulation

    Mellor, R. B. & Collinge, David B., 1 Jan 1995, In: Journal of Experimental Botany. 46, 1, p. 1-18 18 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Critical Assessment of Metagenome Interpretation: the second round of challenges

    Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, Darling, A. E., Egan, R., Eskin, E., Georganas, E., Goltsman, E., Gray, M. A., Hansen, Lars Hestbjerg, Hofmeyr, S., Huang, P., Irber, L., Jia, H., Jørgensen, T. S., Kieser, S. D., Klemetsen, T., Kola, A., Kolmogorov, M., Korobeynikov, A., Kwan, J., LaPierre, N., Lemaitre, C., Li, C., Limasset, A., Malcher-Miranda, F., Mangul, S., Marcelino, V. R., Marchet, C., Marijon, P., Meleshko, D., Mende, D. R., Milanese, A., Nagarajan, N., Nissen, Jakob Nybo, Nurk, S., Oliker, L., Paoli, L., Peterlongo, P., Piro, V. C., Porter, J. S., Rasmussen, Simon, Rees, E. R., Reinert, K., Renard, B., Robertsen, E. M., Rosen, G. L., Ruscheweyh, H. J., Sarwal, V., Segata, N., Seiler, E., Shi, L., Sun, F., Sunagawa, S., Sørensen, Søren Johannes, Thomas, A., Tong, C., Trajkovski, M., Tremblay, J., Uritskiy, G., Vicedomini, R., Wang, Z., Wang, Z., Wang, Z., Warren, A., Willassen, N. P., Yelick, K., You, R., Zeller, G., Zhao, Z., Zhu, S., Zhu, J., Garrido-Oter, R., Gastmeier, P., Hacquard, S., Häußler, S., Khaledi, A., Maechler, F., Mesny, F., Radutoiu, S., Schulze-Lefert, P., Smit, N., Strowig, T., Bremges, A., Sczyrba, A. & McHardy, A. C., 2022, In: Nature Methods. 19, 4, p. 429-440

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Bioactivities by a crude extract from the Greenlandic Pseudomonas sp. In5 involves the nonribosomal peptides, nunamycin and nunapeptin

    Michelsen, C. F., Jensen, H., Venditto, V. J., Hennessy, Rosanna Catherine & Stougaard, P., 2015, In: PeerJ. 3, 16 p., e1476.

    Research output: Contribution to journal › Journal article › Research › peer-review

  41. Published

    Beneficial rhizobacteria: bioactive compounds from a Greenlandic Pseudomonas fluorescens

    Michelsen, C. F., 2013, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 160 p.

    Research output: Book/Report › Ph.D. thesis › Research

  42. Published

    Bacterial diversity in Greenlandic soils as affected by potato cropping and inorganic versus organic fertilization

    Michelsen, C. F., Pedas, P. R., Glaring, M. A., Schjoerring, Jan K. & Stougaard, P., 2014, In: Polar Biology. 37, 1, p. 61-71 11 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Nonribosomal peptides, key biocontrol components for Pseudomonas fluorescens In5, isolated from a Greenlandic suppressive soil

    Michelsen, C. F., Watrous, J., Glaring, M. A., Kersten, R., Koyama, N., Dorrestein, P. C. & Stougaard, P., 2015, In: mBio (Print). 6, 2, 9 p., e00079-15.

    Research output: Contribution to journal › Journal article › Research › peer-review

  44. Published

    An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette

    Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Resistance and Resilience of Soil Microbial Communities Exposed to Petroleum-Derived Compounds

    Modrzynski, J. J., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 84 p.

    Research output: Book/Report › Ph.D. thesis › Research

  46. Published

    Limited recovery of soil microbial activity after transient exposure to gasoline vapors

    Modrzynski, J. J., Christensen, Jan H., Mayer, P. & Brandt, Kristian Koefoed, 2016, In: Environmental Pollution. 216, p. 826-835 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Evaluation of dimethyl sulfoxide (DMSO) as a co-solvent for toxicity testing of hydrophobic organic compounds

    Modrzyński, J. J., Christensen, Jan H. & Brandt, Kristian Koefoed, 2019, In: Ecotoxicology. 28, p. 1136-1141

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Thermal Endurance by a Hot-Spring-Dwelling Phylogenetic Relative of the Mesophilic Paracoccus

    Mondal, N., Roy, C., Chatterjee, S., Sarkar, J., Dutta, S., Bhattacharya, S., Chakraborty, R. & Ghosh, W., 2022, In: Microbiology Spectrum. 10, 6, 25 p., e0160622.

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Influence of Environmental Factors on Occurrence of Cyanobacteria and Abundance of Saxitoxin-Producing Cyanobacteria in a Subtropical Drinking Water Reservoir in Brazil

    Moraes, M. A. B., Rodrigues, R. A. M., Schlüter, L., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. C., 2021, In: Water. 13, 12, p. 1716

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Prediction of Cyanotoxin Episodes in Freshwater: A Case Study on Microcystin and Saxitoxin in the Lobo Reservoir, São Paulo State, Brazil

    Moraes, M. D. A. B., Rodrigues, R. D. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., 2023, In: Environments. 10, 8, 16 p., 143.

    Research output: Contribution to journal › Journal article › Research › peer-review

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