- Published
Spring freeze effect on wheat yield is modulated by winter temperature fluctuations: evidence from meta-analysis and simulating experiment
Li, Xuan Ji, Cai, J., Liu, Fulai, Dai, T., Cao, W. & Jiang, D., 2015, In: Journal of Agronomy and Crop Science. 201, 4, p. 288-300 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft Genome Sequence of Se(IV)-Reducing Bacterium Pseudomonas migulae ES3-33
Li, Xuan Ji, Kot, W., Wang, D., Zheng, S., Wang, G., Hansen, L. H. & Rensing, C., 2015, In: Genome Announcements. 3, 3, p. 1-2 2 p., e00406-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genes conferring copper resistance in Sinorhizobium meliloti CCNWSX0020 also promote growth of Medicago lupulina in copper contaminated soil
Li, Z., Ma, Z., Rensing, C. G. T. & Wei, G., 2014, In: Applied and Environmental Microbiology. 80, 6, p. 1961-1971 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Carbon mineralization and microbial activity in agricultural topsoil and subsoil as regulated by root nitrogen and recalcitrant carbon concentrations
Liang, Z., Elsgaard, L., Nicolaisen, Mette Haubjerg, Lyhne-Kjærbye, A. & Olesen, J. E., 1 Dec 2018, In: Plant and Soil. 433, 1-2, p. 65-82Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Oligosaccharide Rich Diet Increases Akkermansia spp. Bacteria in the Equine Microbiota
Lindenberg, F. C., Lützhøft, Ditte Olsen, Krych, Lukasz, Fielden, J., Kot, Witold, Frøkiær, Hanne, van Galen, G., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2021, In: Frontiers in Microbiology. 12, 666039.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global regulator IscR positively contributes to antimonite resistance and oxidation in Comamonas testosteroni S44
Liu, H., Zhuang, W., Zhang, S., Rensing, C. G. T., Huang, J., Li, J. & Wang, G., 2015, In: Frontiers in Bioscience. 2, 12 p., 70.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Toxicity: resistance pathways for metalloids and toxic metals
Liu, Z., Rensing, C. G. T. & Rosen, B. P., 2013, Encyclopedia of inorganic and bioinorganic chemistry. WileyResearch output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Microbial Production of the Off-Flavor Geosmin in Tilapia Production in Brazilian Water Reservoirs: Importance of Bacteria in the Intestine and Other Fish-Associated Environments
Lukassen, M. B., Jonge, N. D., Bjerregaard, S. M., Podduturi, Raju, Jørgensen, Niels O. G., Petersen, Mikael Agerlin, David, G. S., da Silva, R. J. & Nielsen, J. L., 2019, In: Frontiers in Microbiology. 10, 12 p., 2447.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dynamics of geosmin-producing bacteria in a full-scale saltwater recirculated aquaculture system
Lukassen, M. B., Podduturi, Raju, Rohaan, B., Jørgensen, Niels O. G. & Nielsen, J. L., 1 Feb 2019, In: Aquaculture. 500, p. 170-177 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Draft genome sequences of two protease-producing strains of Arsukibacterium, isolated from two cold and alkaline environments
Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Hallin, P. F., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2015, In: Genome Announcements. 3, 3, 2 p., e00585-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic and exoproteomic analyses of cold- and alkaline-adapted bacteria reveal an abundance of secreted subtilisin-like proteases
Lylloff, J. E., Hansen, L. B. S., Jepsen, M., Sanggaard, K. W., Vester, J. K., Enghild, J. J., Sørensen, Søren Johannes, Stougaard, P. & Glaring, M. A., 2016, In: Microbial Biotechnology. 9, 2, p. 245-256 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatiotemporal heterogeneity of nitrogen transformation potentials in a freshwater estuarine system
Lv, Jiali, Wang, S., Liu, B. & Song, X., 2023, In: Science of the Total Environment. 859, Part 2, 160335.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
GUS and GFP transformation of the biocontrol strain Clonostachys rosea IK726 and the use of these marker genes in ecological studies
Lübeck, M., Knudsen, I. M. B., Jensen, Birgit, Thrane, U., Janvier, C. & Jensen, Dan Funck, Jul 2002, In: Mycological Research.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequences of two copper-resistant Escherichia coli strains isolated from copper-fed pigs
Lüthje, F. L., Hasman, H., Aarestrup, F. M., Alwathnani, H. A. & Rensing, C. G. T., 2014, In: Genome Announcements. 2, 6, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Marked gut microbiota dysbiosis and increased imidazole propionate are associated with a NASH Göttingen Minipig model
Lützhøft, Ditte Olsen, Sinioja, T., Christoffersen, B., Jakobsen, Rasmus Riemer, Geng, Dawei, Ahmad, H. F. B., Straarup, E. M., Pedersen, K. M., Kot, Witold, Pedersen, H. D., Cirera, Susanna, Hyötyläinen, T., Nielsen, Dennis Sandris & Hansen, Axel Kornerup, 2022, In: BMC Microbiology. 22, 1, 287.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Transformación genética de maiz: expresion del gene de la cubierta proteica viral (pMRFVcp-Bar) en plantas transgénicas como estrategia para la obtención de resistencia al virus del rayado fino
Madriz Ordenana, Kenneth, Garita, H., Valdéz, M., Thordal-Christensen, Hans, Collinge, David B., Hammond, R. & Ramirez Fonseca, P., 1996, Universidad de Costa Rica : Centro de Investigacion en Biologia Celular y Molecular : [årsberetning 1996]. Universidad de Costa Rica, p. 30-31 2 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Communication
- Published
A non-antifungal rhizobacterium stimulates plant immunity to protect tomato and Kalanchoe against Fusarium oxysporum and wheat against Zymoseptoria tritici
Madriz Ordenana, Kenneth, Pazarlar, Sercan, Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Nielsen, K. L., Zhang, Y. & Thordal-Christensen, Hans, 2021. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Mechanical transmission of maize rayado fino marafivirus (MRFV) to maize and barley by means of the vascular puncture technique
Madriz Ordenana, Kenneth, Rojas-Montero, R., Lundsgaard, T., Ramirez, P., Thordal-Christensen, Hans & Collinge, David B., Apr 2000, In: Plant Pathology. 49, 2, p. 302-307Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Bacillus cereus Strain EC9 Primes the Plant Immune System for Superior Biocontrol of Fusarium oxysporum
Madriz Ordenana, Kenneth, Pazarlar, S., Jørgensen, Hans Jørgen Lyngs, Nielsen, Tue Kjærgaard, Zhang, Y., Nielsen, K. L., Hansen, Lars Hestbjerg & Thordal-Christensen, Hans, 2022, In: Plants. 11, 5, 19 p., 687.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of faecal microbiota transplantation on abdominal pain, stool frequency, and stool form in patients with moderate-to-severe irritable bowel syndrome: results from a randomised, double-blind, placebo-controlled study
Madsen, A. M. A., Halkjaer, S. I., Christensen, A. H., Guenther, S., Browne, Patrick Denis, Kallemose, T., Hansen, Lars Hestbjerg & Petersen, Andreas Munk, 2021, In: Scandinavian Journal of Gastroenterology. 56, 7, p. 761-769 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Airborne methicillin-resistant Staphylococcus aureus, other bacteria, fungi, endotoxin, and dust in a pigeon exhibition
Madsen, A. M., Zhang, F., Zeng, Y. & Frederiksen, M. W., 2023, In: Environmental Research. 216, 7 p., 114642.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative assessment of the risks associated with use of manure and sewage sludge in Danish agriculture
Magid, Jakob, Pedersen, K. E., Hansen, M., Cedergreen, Nina & Brandt, Kristian Koefoed, 2020, Advances in Agronomy. Sparks, D. L. (ed.). Elsevier, p. 289-334 (Advances in Agronomy, Vol. 164).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Effect of probiotic and sand filtration treatments on water quality and growth of tilapia (Oreochromis niloticus) and pangas (Pangasianodon hypophthalmus) in earthen ponds of southern Bangladesh
Mahmud, S., Ali, M. L., Alam, M. A., Rahman, M. M. & Jørgensen, Niels O. G., 2016, In: Journal of Applied Aquaculture. 28, 3, p. 199-212 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibacterial activity of oxytetracycline on microbial ecology of Nile tilapia (Oreochromis niloticus) gastrointestinal tract under laboratory condition
Mannan, M., Islam, S. R., Osman, M. H., Rahman, M. K., Uddin, M. N., Kamal, M. & Reza, M. S., 2020, In: Aquaculture Research. 51, 5, p. 2125-2133 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the endophytic fungal microbiome of tomato roots: The role of phytohormones in plant-endophyte interactions
Manzotti, A., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
How do phytohormones influence the composition of fungal endophyte communities in tomato roots?
Manzotti, A., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 124 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling
Manzotti, A., Bergna, A., Burow, Meike, Jørgensen, Hans Jørgen Lyngs, Cernava, T., Berg, G., Collinge, David B. & Jensen, Birgit, 2020, In: FEMS Microbiology Ecology. 96, 5, 16 p., fiaa052.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phytohormones in plant-endophyte interactions: investigating the role of these compounds in the recruitment of tomato root fungal endophytes
Manzotti, A., Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Jensen, Birgit, 2017.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Can phytohormones influence the composition of the endophytic microbiome in tomato roots?
Manzotti, A., Bergna, A., Cernava, T., Berg, G., Collinge, David B., Jørgensen, Hans Jørgen Lyngs & Jensen, Birgit, 2018, p. 218. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Species-specific content of As, Pb, and other elements in pangas (Pangasianodon hypophthalmus) and tilapia (Oreochromis niloticus) from aquaculture ponds in southern Bangladesh
Marcussen, H., Alam, M. A., Rahman, M. M., Ali, M. L., Mahmud, S. & Jørgensen, Niels O. G., 2014, In: Aquaculture. 426-427, p. 85-87 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence and Benzophenone-3 Mineralisation Potential of Rhodococcus sp. USK10, A Bacterium Isolated from Riverbank Sediment
Martin, J. D., Krüger, U. S., Zervas, A., Schostag, M., Nielsen, Tue Kjærgaard, Aamand, J., Hansen, Lars Hestbjerg & Ellegaard-Jensen, L., 2022, In: Applied Microbiology. 2, p. 104-112 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data
Mas-Sandoval, A., Pope, N. S., Nielsen, Knud Nor, Altinkaya, Isin, Fumagalli, M. & Korneliussen, Thorfinn Sand, 2022, In: GigaScience. 11, 9 p., giac032.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Regulation of virulence properties in the fish pathogen Vibrio anguillarum: The role of prophages and quorum sensing
Mauritzen, Jesper Juel, 2022, Department of Biology, Faculty of Science, University of Copenhagen. 277 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
The ash dieback crisis: genetic variation in resistance can prove a long-term solution
McKinney, L. V., Nielsen, Lene Rostgaard, Collinge, David B., Thomsen, Iben Margrete, Hansen, Jon Kehlet & Kjær, Erik Dahl, 2014, In: Plant Pathology. 63, 3, p. 485-499 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Used Nasogastric Feeding Tubes from Neonates Contain Infant-Specific Bacterial Profiles
Meinich Juhl, S., Angeliki Krogfelt, K., Kot, Witold, Nielsen, Dennis Sandris & Krych, Lukasz, 2023, In: Microorganisms. 11, 6, 11 p., 1365.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Inoculation of tomato (Solanum lycopersicum) roots with growth promoting Pseudomonas strains induces distinct local and systemic metabolic biosignatures
Mekureyaw, M. F., Beierholm, A. E., Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Physiological and Molecular Plant Pathology. 117, 10 p., 101757.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The cytokinin-producing plant beneficial bacterium Pseudomonas fluorescens G20-18 primes tomato (Solanum lycopersicum) for enhanced drought stress responses
Mekureyaw, M. F., Pandey, Chandana, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Liu, Fulai, Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Journal of Plant Physiology. 270, 15 p., 153629.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A simple model based on known plant defence reactions is sufficient to explain most aspects of nodulation
Mellor, R. B. & Collinge, David B., 1 Jan 1995, In: Journal of Experimental Botany. 46, 1, p. 1-18 18 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Critical Assessment of Metagenome Interpretation: the second round of challenges
Meyer, F., Fritz, A., Deng, Z. L., Koslicki, D., Lesker, T. R., Gurevich, A., Robertson, G., Alser, M., Antipov, D., Beghini, F., Bertrand, D., Brito, J. J., Brown, C. T., Buchmann, J., Buluç, A., Chen, B., Chikhi, R., Clausen, P. T. L. C., Cristian, A., Dabrowski, P. W. & 83 others, , 2022, In: Nature Methods. 19, 4, p. 429-440Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bioactivities by a crude extract from the Greenlandic Pseudomonas sp. In5 involves the nonribosomal peptides, nunamycin and nunapeptin
Michelsen, C. F., Jensen, H., Venditto, V. J., Hennessy, Rosanna Catherine & Stougaard, P., 2015, In: PeerJ. 3, 16 p., e1476.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Beneficial rhizobacteria: bioactive compounds from a Greenlandic Pseudomonas fluorescens
Michelsen, C. F., 2013, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 160 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Bacterial diversity in Greenlandic soils as affected by potato cropping and inorganic versus organic fertilization
Michelsen, C. F., Pedas, P. R., Glaring, M. A., Schjoerring, Jan K. & Stougaard, P., 2014, In: Polar Biology. 37, 1, p. 61-71 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nonribosomal peptides, key biocontrol components for Pseudomonas fluorescens In5, isolated from a Greenlandic suppressive soil
Michelsen, C. F., Watrous, J., Glaring, M. A., Kersten, R., Koyama, N., Dorrestein, P. C. & Stougaard, P., 2015, In: mBio (Print). 6, 2, 9 p., e00079-15.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Endogenous Staphylococcus aureus CRISPR-Cas System Limits Phage Proliferation and Is Efficiently Excised from the Genome as Part of the SCCmec Cassette
Mikkelsen, K., Bowring, Janine Zara, Ng, Y. K., Svanberg Frisinger, Frida, Maglegaard, J. K., Li, Q., Sieber, R. N., Petersen, A., Andersen, P. S., Rostøl, J. T., Høyland-Kroghsbo, Nina Molin & Ingmer, Hanne, 2023, In: Microbiology Spectrum. 11, 4, e01277-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Resistance and Resilience of Soil Microbial Communities Exposed to Petroleum-Derived Compounds
Modrzynski, J. J., 2016, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 84 p.Research output: Book/Report › Ph.D. thesis › Research
- Published
Limited recovery of soil microbial activity after transient exposure to gasoline vapors
Modrzynski, J. J., Christensen, Jan H., Mayer, P. & Brandt, Kristian Koefoed, 2016, In: Environmental Pollution. 216, p. 826-835 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Evaluation of dimethyl sulfoxide (DMSO) as a co-solvent for toxicity testing of hydrophobic organic compounds
Modrzyński, J. J., Christensen, Jan H. & Brandt, Kristian Koefoed, 2019, In: Ecotoxicology. 28, p. 1136-1141Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Thermal Endurance by a Hot-Spring-Dwelling Phylogenetic Relative of the Mesophilic Paracoccus
Mondal, N., Roy, C., Chatterjee, S., Sarkar, J., Dutta, S., Bhattacharya, S., Chakraborty, R. & Ghosh, W., 2022, In: Microbiology Spectrum. 10, 6, 25 p., e0160622.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Influence of Environmental Factors on Occurrence of Cyanobacteria and Abundance of Saxitoxin-Producing Cyanobacteria in a Subtropical Drinking Water Reservoir in Brazil
Moraes, M. A. B., Rodrigues, R. A. M., Schlüter, L., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. C., 2021, In: Water. 13, 12, p. 1716Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Prediction of Cyanotoxin Episodes in Freshwater: A Case Study on Microcystin and Saxitoxin in the Lobo Reservoir, São Paulo State, Brazil
Moraes, M. D. A. B., Rodrigues, R. D. A. M., Podduturi, Raju, Jørgensen, Niels O. G. & Calijuri, M. D. C., 2023, In: Environments. 10, 8, 16 p., 143.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Humanized Diet Profile May Facilitate Colonization and Immune Stimulation in Human Microbiota-Colonized Mice
Moreno-Indias, I., Lundberg, R., Krych, Lukasz, Metzdorff, S. B., Kot, Witold, Sørensen, Dorte Bratbo, Nielsen, Dennis Sandris, Hansen, Camilla Hartmann Friis & Hansen, Axel Kornerup, 2020, In: Frontiers in Microbiology. 11, 15 p., 1336.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Botanicals, endophytes and plant growth-promoting rhizobacteria (PGPR) to control Black Sigatoka disease of banana in Uganda
Mortensen, C. N., Collinge, David B., Jørgensen, Hans Jørgen Lyngs, Gumisiriya, C., Kumakech, A., Kateete, S. N. & Okori, P., 2013, Makerere University.Research output: Book/Report › Report › Research
- Published
Diagnosis of Plant Diseases
Munk, Lisa, Collinge, David B., Djurle, A. & Tronsmo, A. M., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 164-181 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Disease Management Strategies Using Host Resistance
Munk, Lisa, Yuen, J., Djurle, A. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 307-320 14 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Fermentable Dietary Fiber Promotes Helminth Infection and Exacerbates Host Inflammatory Responses
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Jakobsen, S. R., Hansen, Tina Vicky Alstrup, Andersen, D., Brix, S., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Nejsum, P., Thamsborg, Stig Milan & Williams, Andrew Richard, 2020, In: The Journal of Immunology. 204, 11, p. 3042-3055 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Parasite-Probiotic Interactions in the Gut: Bacillus sp. and Enterococcus faecium Regulate Type-2 Inflammatory Responses and Modify the Gut Microbiota of Pigs During Helminth Infection
Myhill, L. J., Stolzenbach, S., Mejer, Helena, Krych, Lukasz, Jakobsen, S. R., Kot, Witold, Skovgaard, K., Canibe, N., Nejsum, P., Nielsen, Dennis Sandris, Thamsborg, Stig Milan & Williams, Andrew Richard, 2022, In: Frontiers in Immunology. 12, 793260.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Contribution of the seed microbiome to weed management
Müller-Stöver, Dorette Sophie, Nybroe, O., Baraibar, B., Loddo, D., Eizenberg, H., French, K., Sønderskov, M., Neve, Paul, Peltzer, D. A., Maczey, N. & Christensen, Svend, 2016, In: Weed Research. 56, 5, p. 335-339 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pararhizobium antarcticum sp nov., isolated from Antarctic water samples
Naqvi, S. U., Qin, Y., Tahir, A. & Stougaard, P., 2017, In: International Journal of Systematic and Evolutionary Microbiology. 67, p. 1650-1655 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Association of Dietary Patterns with Testicular Function in Young Danish Men
Nassan, F. L., Jensen, T. K., Priskorn, L., Halldorsson, T. I., Chavarro, J. E. & Jørgensen, Niels O. G., 21 Feb 2020, In: JAMA Network Open. 3, 2, 16 p., e1921610.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Back to the future of soil metagenomics
Nesme, J., Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., Frostegard, A., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., Murrell, J. C., Myrold, D. D., Nalin, R. & 28 others, , 2016, In: Frontiers in Microbiology. 7, 5 p., 73.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The gut microbiome and abiotic factors as potential determinants of postprandial glucose responses: A single-arm meal study
Nestel, N., Hvass, J. D., Bahl, M. I., Hansen, Lars Hestbjerg, Krych, Lukasz, Nielsen, Dennis Sandris, Dragsted, Lars Ove & Roager, Henrik Munch, 2021, In: Frontiers in Nutrition. 7, 9 p., 594850.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Biological control of rice sheath blight using hyphae-associated bacteria: development of an in planta screening assay to predict biological control agent performance under field conditions
Nicolaisen, Mette Haubjerg, Nguyen Duc Cuong, Herschend, J., Jensen, Birgit, Le Cam Loan, Pham Van Du, Sørensen, Jan, Sørensen, Helle & Olsson, S., 2018, In: BioControl. 63, 6, p. 843-853Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Induced resistance in sugar beet against Cercospora beticola: Induction by dichloroisonicotinic acid is independent of chitinase and β-1,3-glucanase transcript accumulation
Nielsen, K. K., Bojsen, K., Collinge, David B. & Mikkelsen, Jens D., 1 Jan 1994, In: Physiological and Molecular Plant Pathology. 45, 2, p. 89-99 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
The Genome of BAM-degrading Aminobacter sp. MSH1 with Several Low Copy Plasmids
Nielsen, Tue Kjærgaard, Hylling, Ole & Ellegaard-Jensen, L., 2018, 12 p.Research output: Working paper › Preprint › Research
- Published
Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18
Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Detection of nucleotide modifications in bacteria and bacteriophages: Strengths and limitations of current technologies and software
Nielsen, Tue Kjærgaard, Forero Junco, Laura Milena, Kot, Witold, Moineau, S., Hansen, Lars Hestbjerg & Riber, Leise, 2023, In: Molecular Ecology. 32, 6, p. 1236-1247 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Nielsen, Tue Kjærgaard, Horemans, B., Lood, C., T’Syen, J., van Noort, V., Lavigne, R., Ellegaard-Jensen, L., Hylling, Ole, Aamand, J., Springael, D. & Hansen, Lars Hestbjerg, 2021, In: Scientific Reports. 11, 12 p., 18943.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genetic rearrangements in Pseudomonas amygdali pathovar aesculi shape coronatine plasmids
Nielsen, Tue Kjærgaard, Winther-Have, Caroline Sophie W, Thomsen, Iben Margrete, Jackson, R. W., Rabiey, M., Hennessy, Rosanna Catherine, Bak, Frederik, Kot, Witold, Nicolaisen, Mette Haubjerg, Carstens, Alexander Byth & Hansen, Lars Hestbjerg, 2023, In: Infection, Genetics and Evolution. 113, 10 p., 105486.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Antibiotic resistance genes are differentially mobilized according to resistance mechanism
Nielsen, Tue Kjærgaard, Browne, Patrick Denis & Hansen, Lars Hestbjerg, 2022, In: GigaScience. 11, 17 p., giac072.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global transcriptome analysis of Rhizobium favelukesii LPU83 in response to acid stress
Nilsson, J. F., Castellani, L. G., Draghi, W. O., Mogro, E. G., Wibberg, D., Winkler, A., Hansen, Lars Hestbjerg, Schluüter, A., Puühler, A., Kalinowski, J., Tejerizo, G. A. T. & Pistorio, M., 2021, In: FEMS Microbiology Ecology. 97, 1, fiaa235.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Plant-endophyte interactions as a source of bioactive compounds: Regulation of specialised metabolism during tomato and Serendipita indica interaction
Ntana, F., 2019, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen.Research output: Book/Report › Ph.D. thesis › Research
- Published
Pseudomonas nunensis sp. nov. isolated from a suppressive potato field in Greenland
Ntana, F., Hennessy, Rosanna Catherine, Zervas, A. & Stougaard, P., 2023, In: International Journal of Systematic and Evolutionary Microbiology. 73, 2, 8 p., 005700.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fungal endophytes – the hidden inducers of volatile terpene biosynthesis in tomato plants
Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Cernava, T., Berg, G. & Hamberger, B., 2017.Research output: Contribution to conference › Conference abstract for conference › Research
- Published
Transcriptome analysis sheds light on the Serendipita indica-tomato interaction
Ntana, F., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs, Collinge, David B. & Hamberger, B., 2017, Microbe-assisted crop production - opportunities, challenges & needs: abstract book 2017. miCROPe, p. 119 1 p.Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research
- Published
Regulation of Tomato Specialised Metabolism after Establishment of Symbiosis with the Endophytic Fungus Serendipita indica
Ntana, F., Johnson, S. R., Hamberger, B., Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2022, In: Microorganisms. 10, 17 p., 194.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A sesquiterpene synthase from the endophytic fungus Serendipita indica catalyzes formation of viridiflorol
Ntana, F., Bhat, W. W., Johnson, S. R., Jørgensen, Hans Jørgen Lyngs, Collinge, David B., Jensen, Birgit & Hamberger, B., 2021, In: Biomolecules. 11, 6, 16 p., 898.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Method for producing the sesquiterpene viridiflorol with a fungal enzyme
Ntana, F., Collinge, David B., Hamberger, B. R., Bhat, W. W., Johnson, S. R., Jensen, Birgit & Jørgensen, Hans Jørgen Lyngs, 2021, IPC No. A61K-000/00, C12N-009/88, Patent No. WO2021050841-A2, 11 Sep 2020Research output: Patent
- Published
Coping with copper: legacy effect of copper on potential activity of soil bacteria following a century of exposure
Nunes, I. M., Jacquiod, S. J. A., Brejnrod, A. D., Holm, Peter Engelund, Johansen, A., Brandt, Kristian Koefoed, Priemé, Anders & Sørensen, Søren Johannes, 2016, In: F E M S Microbiology Ecology. 92, 11, 12 p., fiw175.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field
Nunes, I., Hansen, Veronika, Bak, Frederik, Bonnichsen, L., Su, J., Hao, X., Raymond, Nelly Sophie, Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Nybroe, O., 2022, In: FEMS Microbiology Ecology. 98, 3, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Perspectives on the use of by-products to treat soil and water pollution
Nunez-Delgado, A., Alvarez-Rodriguez, E., Fernandez-Sanjurjo, M. J., Carlos Novoa-Munoz, J., Arias-Estevez, M. & Fernandez Calviño, D., 2015, In: Microporous and Mesoporous Materials. 210, p. 199-201 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Olsen, Nikoline S., Nielsen, Tue Kjærgaard, Cui, L., Dedon, P., Neve, H., Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Nucleic Acids Research. 51, 16, 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential
Olsen, N. S., Hendriksen, N. B., Hansen, Lars Hestbjerg & Kot, Witold, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 3, p. 137-148Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exploring the Remarkable Diversity of Culturable Escherichia coli Phages in the Danish Wastewater Environment
Olsen, Nikoline S., Forero Junco, Laura Milena, Kot, Witold & Hansen, Lars Hestbjerg, 2020, In: Viruses. 12, 9, 21 p., 986.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Salmonella phage akira, infecting selected Salmonella enterica Enteritidis and Typhimurium strains, represents a new lineage of bacteriophages
Olsen, Nikoline S., Lametsch, Rene, Wagner, N., Hansen, Lars Hestbjerg & Kot, Witold, 2022, In: Archives of Virology. 167, p. 2049–2056Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enterococcus phage Nonaheksakonda infecting clinical isolates of Enterococcus faecalis represents a new lineage in the family Siphoviridae
Olsen, Nikoline S., Nielsen, K. J., Plöger, M., Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Archives of Virology. 166, p. 593-599 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Hitchhiker’s Guide to Statistical Analysis of Feature-based Molecular Networks from Non-Targeted Metabolomics Data
Pakkir Shah, A. K., Walter, A., Ottosson, F., Russo, F., Navarro-Díaz, M., Boldt, J., Kalinski, J-C., Kontou, E. E., Elofson, J., Polyzois, A., González-Marín, C., Farrell, S., Aggerbeck, M. R., Pruksatrakul, T., Chan, N., Wang, Y., Pöchhacker, M., Brungs, C., Cámara, B., Caraballo-Rodríguez, A. M. & 37 others, , 2023, ChemRxiv, 83 p.Research output: Working paper › Preprint › Research
- Published
BacMet: antibacterial biocide and metal resistance genes database
Pal, C., Bengtsson-Palme, J., Rensing, C. G. T., Kristiansson, E. & Larsson, D. G. J., 2014, In: Nucleic Acids Research. 42, D1, p. D737-D743 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic variation and genomic variation in insect virulence traits reveal patterns of intraspecific diversity in a locust-specific fungal pathogen
mbs625, mbs625, Meyling, Nicolai Vitt & de Fine Licht, Henrik Hjarvard, 2023, In: Journal of Evolutionary Biology. 36, 10, p. 1438-1454 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T
Pathiraja, D., Christiansen, L., Park, B., Schultz-Johansen, M., Bang, G., Stougaard, P. & Choi, I. G., 2021, In: Applied and Environmental Microbiology. 87, 12, 19 p., e00230-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Improving Griffith's protocol for co-extraction of microbial DNA and RNA in adsorptive soils
Paulin, M. M., Nicolaisen, Mette Haubjerg, Jacobsen, C. S., Gimsing, A. L., Sørensen, Jan & Bælum, J., 2013, In: Soil Biology & Biochemistry. 63, p. 37-49 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A Rare, Virulent Clostridium perfringens Bacteriophage Susfortuna Is the First Isolated Bacteriophage in a New Viral Genus
Pedersen, Julie Stenberg, Kot, Witold, Plöger, M., Lametsch, Rene, Neve, H., Franz, C. M. A. P. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 230-236 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae
Pedersen, Julie Stenberg, Carstens, Alexander Byth, Djurhuus, Amaru Miranda, Kot, Witold, Neve, H. & Hansen, Lars Hestbjerg, 2020, In: PHAGE: Therapy, Applications, and Research. 1, 4, p. 237-244 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of risks related to agricultural use of sewage sludge, pig and cattle slurry
Pedersen, K. E., Brandt, Kristian Koefoed, Hansen, M., Cedergreen, Nina & Magid, Jakob, 2019, Department of Plant and Environmental Sciences, University of Copenhagen. 143 p.Research output: Book/Report › Report › Research
- Published
Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers
Peixoto, L., Olesen, J. E., Elsgaard, L., Lønne Enggrob, K., C. Banfield, C., Dippold, M. A., Nicolaisen, Mette Haubjerg, Bak, Frederik, Zang, H., Dresbøll, Dorte Bodin, Thorup-Kristensen, Kristian & Rasmussen, J., 2022, In: Scientific Reports. 12, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial Plant Pathogens
Perssona, P., Pirhonen, M. & Collinge, David B., 1 Jan 2020, Fungal-Like Plant Pathogens. CABI International, p. 89-106 18 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
- Published
Geosmin off-flavour in pond-raised fish in southern Bangladesh and occurrence of potential off-flavour producing organisms
Petersen, Mikael Agerlin, Alam, A., Rahman, M., Ali, L., Mahmud, S., Schlüter, L. & Jørgensen, Niels O. G., 2014, In: Aquaculture Environment Interactions. 5, p. 107-116 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Ballast water treatment and bacteria: Analysis of bacterial activity and diversity after treatment of simulated ballast water by electrochlorination and UV exposure
Petersen, N. B., Madsen, T., Glaring, M. A., Dobbs, F. C. & Jørgensen, Niels O. G., 2019, In: Science of the Total Environment. 648, p. 408-421 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Understanding the mechanisms underlying biological control of Fusarium diseases in cereals
Petrucci, A., Khairullina, A., Sarrocco, S., Jensen, Dan Funck, Jensen, Birgit, Jørgensen, Hans Jørgen Lyngs & Collinge, David B., 2023, In: European Journal of Plant Pathology. 167, p. 453-476Research output: Contribution to journal › Review › Research › peer-review
- Published
UHLPC- QTOF and MALDI-TOF analysis of novel antifungal natural products
Phippen, C., Nielsen, K. F., Hennessy, Rosanna Catherine, Michelsen, C. F. & Stougaard, P., 2015.Research output: Contribution to conference › Poster › Research › peer-review
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Fate and activity of fungal BCAs delivered to strawberry flowers and their potential for integration with fungicides
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Continuous collection of volatiles produced by Streptomyces grown on oatmeal agar by headspace extraction and GC-MS
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Transcriptomic profiling to identify genes involved in Fusarium mycotoxin Deoxynivalenol and Zearalenone tolerance in the mycoparasitic fungus Clonostachys rosea
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