The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements

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Standard

The Mobilome : Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements. / Browne, Patrick Denis; Kot, Witold; Jørgensen, Tue Sparholt; Hansen, Lars Hestbjerg.

Horizontal Gene Transfer: Methods and Protocols. red. / Fernando de la Cruz. Humana Press, 2020. s. 253-264 (Methods in Molecular Biology, Bind 2075).

Publikation: Bidrag til bog/antologi/rapport › Bidrag til bog/antologi › Forskning › fagfællebedømt

Harvard

Browne, PD, Kot, W, Jørgensen, TS & Hansen, LH 2020, The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements. i FDL Cruz (red.), Horizontal Gene Transfer: Methods and Protocols. Humana Press, Methods in Molecular Biology, bind 2075, s. 253-264. https://doi.org/10.1007/978-1-4939-9877-7_18

APA

Browne, P. D., Kot, W., Jørgensen, T. S., & Hansen, L. H. (2020). The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements. I F. D. L. Cruz (red.), Horizontal Gene Transfer: Methods and Protocols (s. 253-264). Humana Press. Methods in Molecular Biology Bind 2075 https://doi.org/10.1007/978-1-4939-9877-7_18

Vancouver

Browne PD, Kot W, Jørgensen TS, Hansen LH. The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements. I Cruz FDL, red., Horizontal Gene Transfer: Methods and Protocols. Humana Press. 2020. s. 253-264. (Methods in Molecular Biology, Bind 2075). https://doi.org/10.1007/978-1-4939-9877-7_18

Author

Browne, Patrick Denis ; Kot, Witold ; Jørgensen, Tue Sparholt ; Hansen, Lars Hestbjerg. / The Mobilome : Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements. Horizontal Gene Transfer: Methods and Protocols. red. / Fernando de la Cruz. Humana Press, 2020. s. 253-264 (Methods in Molecular Biology, Bind 2075).

Bibtex

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title = "The Mobilome: Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements",
abstract = "Isolation, sequencing, and analysis of circular genetic elements bring new insights to mobile genetic elements related to microbial ecology. One method used to study circular plasmids, viruses, and other elements is called the mobilome method. The mobilome method presented here is an unamplified mobilome approach allowing fast isolation of circular DNA elements from a variety of samples followed by directly building unamplified Illumina-compatible sequencing libraries using enzymatic tagging and fragmentation. Several methods for bioinformatic analysis of mobilome data are also suggested.",
keywords = "Circular DNA elements, Horizontal gene transfer, Metagenomics, MGE, Mobile genetic elements, Mobilome, Plasmid, Plasmidome",
author = "Browne, {Patrick Denis} and Witold Kot and J{\o}rgensen, {Tue Sparholt} and Hansen, {Lars Hestbjerg}",
year = "2020",
doi = "10.1007/978-1-4939-9877-7_18",
language = "English",
isbn = "978-1-4939-9876-0",
series = "Methods in Molecular Biology",
publisher = "Humana Press",
pages = "253--264",
editor = "Cruz, {Fernando de la}",
booktitle = "Horizontal Gene Transfer",
address = "United States",

}

RIS

TY - CHAP

T1 - The Mobilome

T2 - Metagenomic Analysis of Circular Plasmids, Viruses, and Other Extrachromosomal Elements

AU - Browne, Patrick Denis

AU - Kot, Witold

AU - Jørgensen, Tue Sparholt

AU - Hansen, Lars Hestbjerg

PY - 2020

Y1 - 2020

N2 - Isolation, sequencing, and analysis of circular genetic elements bring new insights to mobile genetic elements related to microbial ecology. One method used to study circular plasmids, viruses, and other elements is called the mobilome method. The mobilome method presented here is an unamplified mobilome approach allowing fast isolation of circular DNA elements from a variety of samples followed by directly building unamplified Illumina-compatible sequencing libraries using enzymatic tagging and fragmentation. Several methods for bioinformatic analysis of mobilome data are also suggested.

AB - Isolation, sequencing, and analysis of circular genetic elements bring new insights to mobile genetic elements related to microbial ecology. One method used to study circular plasmids, viruses, and other elements is called the mobilome method. The mobilome method presented here is an unamplified mobilome approach allowing fast isolation of circular DNA elements from a variety of samples followed by directly building unamplified Illumina-compatible sequencing libraries using enzymatic tagging and fragmentation. Several methods for bioinformatic analysis of mobilome data are also suggested.

KW - Circular DNA elements

KW - Horizontal gene transfer

KW - Metagenomics

KW - MGE

KW - Mobile genetic elements

KW - Mobilome

KW - Plasmid

KW - Plasmidome

U2 - 10.1007/978-1-4939-9877-7_18

DO - 10.1007/978-1-4939-9877-7_18

M3 - Book chapter

C2 - 31584168

AN - SCOPUS:85072939064

SN - 978-1-4939-9876-0

T3 - Methods in Molecular Biology

SP - 253

EP - 264

BT - Horizontal Gene Transfer

A2 - Cruz, Fernando de la

PB - Humana Press

ER -

ID: 234151105