High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Standard

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. / Hufnagel, Bárbara; Marques, André; Soriano, Alexandre; Marquès, Laurence; Divol, Fanchon; Doumas, Patrick; Sallet, Erika; Mancinotti, Davide; Carrere, Sébastien; Marande, William; Arribat, Sandrine; Keller, Jean; Huneau, Cécile; Blein, Thomas; Aimé, Delphine; Laguerre, Malika; Taylor, Jemma; Schubert, Veit; Nelson, Matthew; Geu-Flores, Fernando; Crespi, Martin; Gallardo, Karine; Delaux, Pierre-Marc; Salse, Jérôme; Bergès, Hélène; Guyot, Romain; Gouzy, Jérôme; Péret, Benjamin.

I: Nature Communications, Bind 11, Nr. 1, 492, 2020.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Hufnagel, B, Marques, A, Soriano, A, Marquès, L, Divol, F, Doumas, P, Sallet, E, Mancinotti, D, Carrere, S, Marande, W, Arribat, S, Keller, J, Huneau, C, Blein, T, Aimé, D, Laguerre, M, Taylor, J, Schubert, V, Nelson, M, Geu-Flores, F, Crespi, M, Gallardo, K, Delaux, P-M, Salse, J, Bergès, H, Guyot, R, Gouzy, J & Péret, B 2020, 'High-quality genome sequence of white lupin provides insight into soil exploration and seed quality', Nature Communications, bind 11, nr. 1, 492. https://doi.org/10.1038/s41467-019-14197-9

APA

Hufnagel, B., Marques, A., Soriano, A., Marquès, L., Divol, F., Doumas, P., Sallet, E., Mancinotti, D., Carrere, S., Marande, W., Arribat, S., Keller, J., Huneau, C., Blein, T., Aimé, D., Laguerre, M., Taylor, J., Schubert, V., Nelson, M., ... Péret, B. (2020). High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nature Communications, 11(1), [492]. https://doi.org/10.1038/s41467-019-14197-9

Vancouver

Hufnagel B, Marques A, Soriano A, Marquès L, Divol F, Doumas P o.a. High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nature Communications. 2020;11(1). 492. https://doi.org/10.1038/s41467-019-14197-9

Author

Hufnagel, Bárbara ; Marques, André ; Soriano, Alexandre ; Marquès, Laurence ; Divol, Fanchon ; Doumas, Patrick ; Sallet, Erika ; Mancinotti, Davide ; Carrere, Sébastien ; Marande, William ; Arribat, Sandrine ; Keller, Jean ; Huneau, Cécile ; Blein, Thomas ; Aimé, Delphine ; Laguerre, Malika ; Taylor, Jemma ; Schubert, Veit ; Nelson, Matthew ; Geu-Flores, Fernando ; Crespi, Martin ; Gallardo, Karine ; Delaux, Pierre-Marc ; Salse, Jérôme ; Bergès, Hélène ; Guyot, Romain ; Gouzy, Jérôme ; Péret, Benjamin. / High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. I: Nature Communications. 2020 ; Bind 11, Nr. 1.

Bibtex

@article{5949431d9adf4d619e22353d821406ed,
title = "High-quality genome sequence of white lupin provides insight into soil exploration and seed quality",
abstract = "White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n = 50, 451 Mb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.",
keywords = "Alkaloids/chemistry, Centromere/genetics, Ecotype, Evolution, Molecular, Gene Dosage, Gene Duplication, Genetic Variation, Genome, Plant, Genomic Structural Variation, Lupinus/genetics, Models, Genetic, Molecular Sequence Annotation, Plant Leaves/metabolism, Plant Proteins/metabolism, Plant Roots/genetics, Polymorphism, Single Nucleotide/genetics, Repetitive Sequences, Nucleic Acid/genetics, Seeds/physiology, Sequence Analysis, DNA, Soil, Synteny/genetics, Transcriptome/genetics",
author = "B{\'a}rbara Hufnagel and Andr{\'e} Marques and Alexandre Soriano and Laurence Marqu{\`e}s and Fanchon Divol and Patrick Doumas and Erika Sallet and Davide Mancinotti and S{\'e}bastien Carrere and William Marande and Sandrine Arribat and Jean Keller and C{\'e}cile Huneau and Thomas Blein and Delphine Aim{\'e} and Malika Laguerre and Jemma Taylor and Veit Schubert and Matthew Nelson and Fernando Geu-Flores and Martin Crespi and Karine Gallardo and Pierre-Marc Delaux and J{\'e}r{\^o}me Salse and H{\'e}l{\`e}ne Berg{\`e}s and Romain Guyot and J{\'e}r{\^o}me Gouzy and Benjamin P{\'e}ret",
year = "2020",
doi = "10.1038/s41467-019-14197-9",
language = "English",
volume = "11",
journal = "Nature Communications",
issn = "2041-1723",
publisher = "nature publishing group",
number = "1",

}

RIS

TY - JOUR

T1 - High-quality genome sequence of white lupin provides insight into soil exploration and seed quality

AU - Hufnagel, Bárbara

AU - Marques, André

AU - Soriano, Alexandre

AU - Marquès, Laurence

AU - Divol, Fanchon

AU - Doumas, Patrick

AU - Sallet, Erika

AU - Mancinotti, Davide

AU - Carrere, Sébastien

AU - Marande, William

AU - Arribat, Sandrine

AU - Keller, Jean

AU - Huneau, Cécile

AU - Blein, Thomas

AU - Aimé, Delphine

AU - Laguerre, Malika

AU - Taylor, Jemma

AU - Schubert, Veit

AU - Nelson, Matthew

AU - Geu-Flores, Fernando

AU - Crespi, Martin

AU - Gallardo, Karine

AU - Delaux, Pierre-Marc

AU - Salse, Jérôme

AU - Bergès, Hélène

AU - Guyot, Romain

AU - Gouzy, Jérôme

AU - Péret, Benjamin

PY - 2020

Y1 - 2020

N2 - White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n = 50, 451 Mb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.

AB - White lupin (Lupinus albus L.) is an annual crop cultivated for its protein-rich seeds. It is adapted to poor soils due to the production of cluster roots, which are made of dozens of determinate lateral roots that drastically improve soil exploration and nutrient acquisition (mostly phosphate). Using long-read sequencing technologies, we provide a high-quality genome sequence of a cultivated accession of white lupin (2n = 50, 451 Mb), as well as de novo assemblies of a landrace and a wild relative. We describe a modern accession displaying increased soil exploration capacity through early establishment of lateral and cluster roots. We also show how seed quality may have been impacted by domestication in term of protein profiles and alkaloid content. The availability of a high-quality genome assembly together with companion genomic and transcriptomic resources will enable the development of modern breeding strategies to increase and stabilize white lupin yield.

KW - Alkaloids/chemistry

KW - Centromere/genetics

KW - Ecotype

KW - Evolution, Molecular

KW - Gene Dosage

KW - Gene Duplication

KW - Genetic Variation

KW - Genome, Plant

KW - Genomic Structural Variation

KW - Lupinus/genetics

KW - Models, Genetic

KW - Molecular Sequence Annotation

KW - Plant Leaves/metabolism

KW - Plant Proteins/metabolism

KW - Plant Roots/genetics

KW - Polymorphism, Single Nucleotide/genetics

KW - Repetitive Sequences, Nucleic Acid/genetics

KW - Seeds/physiology

KW - Sequence Analysis, DNA

KW - Soil

KW - Synteny/genetics

KW - Transcriptome/genetics

U2 - 10.1038/s41467-019-14197-9

DO - 10.1038/s41467-019-14197-9

M3 - Journal article

C2 - 31980615

VL - 11

JO - Nature Communications

JF - Nature Communications

SN - 2041-1723

IS - 1

M1 - 492

ER -

ID: 243196945