Setting a baseline for global urban virome surveillance in sewage

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Documents

  • David F. Nieuwenhuijse
  • Bas B. Oude Munnink
  • My V.T. Phan
  • Rene S. Hendriksen
  • Artan Bego
  • Catherine Rees
  • Neilson, Elizabeth Heather Jakobsen
  • Kris Coventry
  • Peter Collignon
  • Franz Allerberger
  • Teddie O. Rahube
  • Guilherme Oliveira
  • Ivan Ivanov
  • Thet Sopheak
  • Yith Vuthy
  • Christopher K. Yost
  • Djim adjim Tabo
  • Sara Cuadros-Orellana
  • Changwen Ke
  • Huanying Zheng
  • Li Baisheng
  • Xiaoyang Jiao
  • Pilar Donado-Godoy
  • Kalpy Julien Coulibaly
  • Jasna Hrenovic
  • Matijana Jergović
  • Renáta Karpíšková
  • Bodil Elsborg
  • Mengistu Legesse
  • Tadesse Eguale
  • Annamari Heikinheimo
  • Jose Eduardo Villacis
  • Bakary Sanneh
  • Lile Malania
  • Andreas Nitsche
  • Annika Brinkmann
  • Courage Kosi Setsoafia Saba
  • Bela Kocsis
  • Norbert Solymosi
  • Thorunn R. Thorsteinsdottir
  • Abdulla Mohamed Hatha
  • Masoud Alebouyeh
  • Dearbhaile Morris
  • Louise O’Connor
  • Martin Cormican
  • Jacob Moran-Gilad
  • Antonio Battisti
  • Patricia Alba
  • Zeinegul Shakenova
  • Ciira Kiiyukia
  • the Global Sewage Surveillance project consortium

The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.

Original languageEnglish
Article number13748
JournalScientific Reports
Volume10
ISSN2045-2322
DOIs
Publication statusPublished - 2020

Bibliographical note

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© 2020, The Author(s).

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