Setting a baseline for global urban virome surveillance in sewage
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Setting a baseline for global urban virome surveillance in sewage. / Nieuwenhuijse, David F.; Oude Munnink, Bas B.; Phan, My V.T.; Hendriksen, Rene S.; Bego, Artan; Rees, Catherine; Neilson, Elizabeth Heather; Coventry, Kris; Collignon, Peter; Allerberger, Franz; Rahube, Teddie O.; Oliveira, Guilherme; Ivanov, Ivan; Sopheak, Thet; Vuthy, Yith; Yost, Christopher K.; Tabo, Djim adjim; Cuadros-Orellana, Sara; Ke, Changwen; Zheng, Huanying; Baisheng, Li; Jiao, Xiaoyang; Donado-Godoy, Pilar; Coulibaly, Kalpy Julien; Hrenovic, Jasna; Jergović, Matijana; Karpíšková, Renáta; Elsborg, Bodil; Legesse, Mengistu; Eguale, Tadesse; Heikinheimo, Annamari; Villacis, Jose Eduardo; Sanneh, Bakary; Malania, Lile; Nitsche, Andreas; Brinkmann, Annika; Saba, Courage Kosi Setsoafia; Kocsis, Bela; Solymosi, Norbert; Thorsteinsdottir, Thorunn R.; Hatha, Abdulla Mohamed; Alebouyeh, Masoud; Morris, Dearbhaile; O’Connor, Louise; Cormican, Martin; Moran-Gilad, Jacob; Battisti, Antonio; Alba, Patricia; Shakenova, Zeinegul; Kiiyukia, Ciira; the Global Sewage Surveillance project consortium.
In: Scientific Reports, Vol. 10, 13748, 2020.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Setting a baseline for global urban virome surveillance in sewage
AU - Nieuwenhuijse, David F.
AU - Oude Munnink, Bas B.
AU - Phan, My V.T.
AU - Hendriksen, Rene S.
AU - Bego, Artan
AU - Rees, Catherine
AU - Neilson, Elizabeth Heather
AU - Coventry, Kris
AU - Collignon, Peter
AU - Allerberger, Franz
AU - Rahube, Teddie O.
AU - Oliveira, Guilherme
AU - Ivanov, Ivan
AU - Sopheak, Thet
AU - Vuthy, Yith
AU - Yost, Christopher K.
AU - Tabo, Djim adjim
AU - Cuadros-Orellana, Sara
AU - Ke, Changwen
AU - Zheng, Huanying
AU - Baisheng, Li
AU - Jiao, Xiaoyang
AU - Donado-Godoy, Pilar
AU - Coulibaly, Kalpy Julien
AU - Hrenovic, Jasna
AU - Jergović, Matijana
AU - Karpíšková, Renáta
AU - Elsborg, Bodil
AU - Legesse, Mengistu
AU - Eguale, Tadesse
AU - Heikinheimo, Annamari
AU - Villacis, Jose Eduardo
AU - Sanneh, Bakary
AU - Malania, Lile
AU - Nitsche, Andreas
AU - Brinkmann, Annika
AU - Saba, Courage Kosi Setsoafia
AU - Kocsis, Bela
AU - Solymosi, Norbert
AU - Thorsteinsdottir, Thorunn R.
AU - Hatha, Abdulla Mohamed
AU - Alebouyeh, Masoud
AU - Morris, Dearbhaile
AU - O’Connor, Louise
AU - Cormican, Martin
AU - Moran-Gilad, Jacob
AU - Battisti, Antonio
AU - Alba, Patricia
AU - Shakenova, Zeinegul
AU - Kiiyukia, Ciira
AU - the Global Sewage Surveillance project consortium
N1 - Publisher Copyright: © 2020, The Author(s).
PY - 2020
Y1 - 2020
N2 - The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.
AB - The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective.
U2 - 10.1038/s41598-020-69869-0
DO - 10.1038/s41598-020-69869-0
M3 - Journal article
C2 - 32792677
AN - SCOPUS:85089383261
VL - 10
JO - Scientific Reports
JF - Scientific Reports
SN - 2045-2322
M1 - 13748
ER -
ID: 269505169