Niels Agerbirk
Associate Professor
Section for Plant Biochemistry
Thorvaldsensvej 40, 1871 Frederiksberg C, 71 Højhus 71, Building: 71-5-T526
Member of:
- 2024
- Published
Identification of Clubroot-Resistant Germplasm in a Radish (Raphanus sativus L.) Core Collection
Ma, Y., Wang, H., Song, J., Yang, W., Jia, H., Agerbirk, Niels, Chen, Y., Li, C., Piao, Y., Li, S. & Zhang, X., 2024, In: Agronomy. 14, 1, 12 p., 157.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Essentials in the acquisition, interpretation, and reporting of plant metabolite profiles
Çiçek, S. S., Mangoni, A., Hanschen, F. S., Agerbirk, Niels & Zidorn, C., 2024, In: Phytochemistry. 220, 16 p., 114004.Research output: Contribution to journal › Review › Research › peer-review
- 2023
- Published
Phytoalexins of the crucifer Barbarea vulgaris: Structural profile and correlation with glucosinolate turnover
Cárdenas, Pablo D., Landtved, J. P., Larsen, S. H., Lindegaard, Nicolai, Wøhlk, S., Jensen, Karen Rysbjerg, Pattison, David, Burow, Meike, Bak, Søren, Crocoll, C. & Agerbirk, Niels, 2023, In: Phytochemistry. 213, 17 p., 113742.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Ancient biosynthesis in an oil crop: Glucosinulate profiles in Limnanthes alba and its relatives (Limnanthaceae, Brassicales)
Agerbirk, Niels, Pattison, David, Mandáková, T., Lysak, M. A., Montaut, S. & Stærk, Dan, 2022, In: Journal of Agricultural and Food Chemistry. 70, p. 1134-1147Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Comparison of glucosinolate diversity in the crucifer tribe Cardamineae and the remaining order Brassicales highlights repetitive evolutionary loss and gain of biosynthetic steps
Agerbirk, Niels, Hansen, Cecilie Ida Cetti, Kiefer, C., Hauser, T. P., Ørgaard, Marian, Lange, Conny Bruun Asmussen, Cipollini, D. & Koch, M. A., 2021, In: Phytochemistry. 185, 112668.Research output: Contribution to journal › Review › Research › peer-review
- Published
Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates
Agerbirk, Niels, Hansen, Cecilie Ida Cetti, Olsen, C. E., Kiefer, C., Hauser, T. P., Christensen, S., Jensen, Karen Rysbjerg, Ørgaard, Marian, Pattison, David, Lange, Conny Bruun Asmussen, Cipollini, D. & Koch, M. A., 2021, In: Phytochemistry. 185, 112658.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Development and application of a virus-induced gene silencing protocol for the study of gene function in narrow-leafed lupin
Mancinotti, Davide, Rodriguez, M. C., Frick, Karen Michiko, Dueholm, B., Jepsen, D. G., Agerbirk, Niels & Geu-Flores, Fernando, 2021, In: Plant Methods. 17, 1, 13 p., 131.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Engineering and optimization of the 2-phenylethylglucosinolate production in Nicotiana benthamiana by combining biosynthetic genes from Barbarea vulgaris and Arabidopsis thaliana
Wang, Cuiwei, Crocoll, C., Agerbirk, Niels & Halkier, Barbara Ann, 2021, In: Plant Journal. 106, 4, p. 978-992Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Making use of surplus sugar
Agerbirk, Niels, 2020, In: Nature Chemical Biology. 16, 12, p. 1283-1284 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Glucosinolate structural diversity, identification, chemical synthesis and metabolism in plants
Blažević, I., Montaut, S., Burčul, F., Olsen, C. E., Burow, Meike, Rollin, P. & Agerbirk, Niels, 2020, In: Phytochemistry. 169, 57 p., 112100.Research output: Contribution to journal › Review › Research › peer-review
- Published
Characterization of Arabidopsis CYP79C1 and CYP79C2 by Glucosinolate Pathway Engineering in Nicotiana benthamiana Shows Substrate Specificity Toward a Range of Aliphatic and Aromatic Amino Acids
Wang, Cuiwei, Dissing, M. M., Agerbirk, Niels, Crocoll, C. & Halkier, Barbara Ann, 2020, In: Frontiers in Plant Science. 11, 13 p., 57.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Different herbivore responses to two co-occurring chemotypes of the wild crucifer Barbarea vulgaris
Christensen, S., Enge, S., Jensen, Karen Rysbjerg, Müller, C., Kiær, Lars Pødenphant, Agerbirk, Niels, Heimes, C. & Hauser, T. P., 15 Feb 2019, In: Arthropod-Plant Interactions. 13, 1, p. 19-30 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A high-density genetic map and QTL mapping of leaf traits and glucosinolates in Barbarea vulgaris
Liu, T. J., Zhang, Y. J., Agerbirk, Niels, Wang, H. P., Wei, X. C., Song, J. P., He, H. J., Zhao, X. Z., Zhang, X. H. & Li, X. X., 14 May 2019, In: BMC Genomics. 20, 1, p. 1-14 371.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Glucosinolate turnover in Brassicales species to an oxazolidin-2-one, formed via the 2-thione and without formation of thioamide
Agerbirk, Niels, Matthes, A., Erthmann, P. Ø., Ugolini, L., Cinti, S., Lazaridi, E., Nuzillard, J., Mueller, C., Bak, Søren, Rollin, P. & Lazzeri, L., 2018, In: Phytochemistry. 153, p. 79-93Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A tandem array of UDP-glycosyltransferases from the UGT73C subfamily glycosylate sapogenins, forming a spectrum of mono- and bisdesmosidic saponins
Erthmann, P. Ø., Agerbirk, Niels & Bak, Søren, 2018, In: Plant Molecular Biology. 97, 1-2, p. 37-55 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Role of the Glucosinolate-Myrosinase System in Mediating Greater Resistance of Barbarea verna than B. vulgaris to Mamestra brassicae Larvae
Mueller, C., Schulz, M., Pagnotta, E., Ugolini, L., Yang, T., Matthes, A., Lazzeri, L. & Agerbirk, Niels, 2018, In: Journal of Chemical Ecology. 44, 12, p. 1190-1205Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry
Byrne, S. L., Erthmann, P. Ø., Agerbirk, Niels, Bak, Søren, Hauser, T. P., Nagy, I., Paina, C. & Asp, T., 2017, In: Scientific Reports. 7, 14 p., 40728.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Hydroxyl and methoxyl derivatives of benzylglucosinolate in Lepidium densiflorum with hydrolysis to isothiocyanates and non-isothiocyanate products: substitution governs product type and mass spectral fragmentation
Pagnotta, E., Agerbirk, Niels, Olsen, C. E., Ugolini, L., Cinti, S. & Lazzeri, L., 2017, In: Journal of Agricultural and Food Chemistry. 65, 15, p. 3167-3178 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Ecotypic differentiation of two sympatric chemotypes of Barbarea vulgaris (Brassicaceae) with different biotic resistances
Heimes, C., Agerbirk, Niels, Sørensen, Helle, van Mölken, T. & Hauser, T. P., 2016, In: Plant Ecology. 217, 9, p. 1055-1068 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Aromatic glucosinolate biosynthesis pathway in Barbarea vulgaris and its response to Plutella xylostella infestation
Liu, T., Zhang, X., Yang, H., Agerbirk, Niels, Qiu, Y., Wang, H., Shen, D., Song, J. & Li, X., 2016, In: Frontiers in Plant Science. 7, 15 p., 83.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Glucosinolate diversity within a phylogenetic framework of the tribe Cardamineae (Brassicaceae) unraveled with HPLC-MS/MS and NMR-based analytical distinction of 70 desulfoglucosinolates
Olsen, C. E., Huang, X., Hansen, Cecilie Ida Cetti, Cipollini, D., Ørgaard, Marian, Matthes, A., Geu-Flores, Fernando, Koch, M. A. & Agerbirk, Niels, 2016, In: Phytochemistry. 132, p. 33-56 24 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Methyl transfer in glucosinolate biosynthesis mediated by indole glucosinolate O-Methyltransferase 5
Pfalz, M., Mukhaimar, M., Perreau, F., Kirk, J., Hansen, Cecilie Ida Cetti, Olsen, C. E., Agerbirk, Niels & Kroymann, J., 2016, In: Plant Physiology. 172, 4, p. 2190-2203 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Derivatization of isothiocyanates and their reactive adducts for chromatographic analysis
Agerbirk, Niels, De Nicola, G. R., Olsen, C. E., Mueller, C. & Iori, R., 2015, In: Phytochemistry. 118, p. 109-115 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Glucosinolate hydrolysis products in the crucifer Barbarea vulgaris include a thiazolidine-2-one from a specific phenolic isomer as well as oxazolidine-2-thiones
Agerbirk, Niels & Olsen, C. E., 2015, In: Phytochemistry. 115, p. 143-151 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Multiple hydroxyphenethyl glucosinolate isomers and their tandem mass spectrometric destinction in a geographically structured polymorphism in the crucifer Barbarea vulgaris
Agerbirk, Niels, Olsen, C. E., Heimes, C., Christensen, S., Bak, Søren & Hauser, T. P., 2015, In: Phytochemistry. 115, p. 130-142 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Diversified glucosinolate metabolism: biosynthesis of hydrogen cyanide and of the hydroxynitrile glucoside alliarinoside in relation to sinigrin metabolism in Alliaria petiolata
Frisch, T., Motawie, Mohammed Saddik, Olsen, C. E., Agerbirk, Niels, Møller, Birger Lindberg & Bjarnholt, Nanna, 2015, In: Frontiers in Plant Science. 6, 16 p., 926.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Taste detection of the non-volatile isothiocyanate moringin results in deterrence to glucosinolate-adapted insect larvae
Müller, C., van Loon, J., Ruschioni, S., De Nicola, G. R., Olsen, C. E., Iori, R. & Agerbirk, Niels, 2015, In: Phytochemistry. 118, p. 139-148 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A recycling pathway for cyanogenic glycosides evidenced by the comparative metabolic profiling in three cyanogenic plant species
Picmanova, M., Neilson, Elizabeth Heather Jakobsen, Motawie, Mohammed Saddik, Olsen, C. E., Agerbirk, Niels, Gray, C. J., Flitsch, S., Meier, S., Silvestro, D., Jørgensen, Kirsten, Sánchez Pérez, R., Møller, Birger Lindberg & Bjarnholt, Nanna, 2015, In: Biochemical Journal. 469, 3, p. 375-389 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative trnscriptome analysis
Zhang, X., Liu, T., Wei, X., Qiu, Y., Song, J., Wang, H., Shen, D., Agerbirk, Niels & Li, X., 2015, In: B M C Genomics. 16, 16 p., 486.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
- Published
Specific glucosinolate analysis reveals variable levels of epimeric glucobarbarins, dietary precursors of 5-phenyloxazolidine-2-thiones, in watercress types with contrasting chromosime numbers
Agerbirk, Niels, Olsen, C. E., Cipollini, D., Ørgaard, Marian, Linde-Laursen, I. & Chew, F. S., 2014, In: Journal of Agricultural and Food Chemistry. 62, 39, p. 9586-9596 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Øvelsesvejledning Biokemi 1
Agerbirk, Niels & Bjergegaard, C., 2014, 10 ed. Institut for Fødevarevidenskab, Det Natur- og Biovidenskabelige Fakultet, Københavns Universitet.Research output: Book/Report › Compendium/lecture notes › Education
- Published
Acylated glucosinolates with diverse acyl groups investigated by high resolution mass spectrometry and infrared multiphoton dissociation
Bianco, G., Agerbirk, Niels, Losito, I. & Cataldi, T. R. I., 2014, In: Phytochemistry. 100, p. 92-102 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Different geographical distributions of two chemotypes of Barbera vulgaris that differ in resistance to insects and a pathogen
Christensen, S., Heimes, C., Agerbirk, Niels, Poulsen, V. K., Olsen, C. E. & Hauser, T. P., 2014, In: Journal of Chemical Ecology. 40, 5, p. 491-501 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Glucosinolate-related glucosides in Alliaria petiolata: sources of variation in the plant and different metabolism in an adapted specialist herbivore, Pieris rapae
Frisch, T., Agerbirk, Niels, Davis, S., Cipollini, D., Olsen, C. E., Motawie, Mohammed Saddik, Bjarnholt, Nanna & Møller, Birger Lindberg, 2014, In: Journal of Chemical Ecology. 40, 10, p. 1063-1079 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
- Published
Glucosinolate structures in evolution
Agerbirk, Niels & Olsen, C. E., 2012, In: Phytochemistry. 77, p. 16-45 30 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Transient abiotic stresses lead to latent defense and reproductive responses over the Brassica rapa life cycle
Steinbrenner, A. D., Agerbirk, Niels, Orians, C. M. & Chew, F. S., 2012, In: Chemoecology. 22, 4, p. 239-250 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2011
- Published
Isoferuloyl derivatives of five seed glucosinolates in the crucifer genus Barbarea
Agerbirk, Niels & Olsen, C. E., 2011, In: Phytochemistry. 72, p. 610-623 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Øvelsesvejledning: Biokemi 1
Agerbirk, Niels & Bjergegaard, C., 2011, 7. ed. Institut for Grundvidenskab og Miljø, Københavns Universitet. 130 p.Research output: Book/Report › Compendium/lecture notes › Education
- Published
Polymorphism for novel tetraglycosylated flavonols in an eco-model crucifer, Barbarea vulgaris
Dalby-Brown, L., Olsen, C. E., Nielsen, J. K. & Agerbirk, Niels, 2011, In: Journal of Agricultural and Food Chemistry. 59, 13, p. 6947-6956 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2010
- Published
Complex metabolism of aromatic glucosinolates in Pieris rapae caterpillars involving nitrile formation, hydroxylation, demethylation, sulfation, and host plant dependent carboxylic acid formation
Agerbirk, Niels, Olsen, C. E., Poulsen, E., Jacobsen, Niels & Hansen, Paul Robert, 2010, In: Insect Biochemistry and Molecular Biology. 40, 2, p. 126-137 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Leaf and floral parts feeding by orange tip butterfly larvae depends on larval position but not on glucosinolate profile or nitrogen level
Agerbirk, Niels, Chew, F. S., Olsen, C. E. & Jørgensen, Kirsten, 2010, In: Journal of Chemical Ecology. 36, 12, p. 1335-1345 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Variable glucosinolate profiles of Cardamine pratensis (Brassicaceae) with equal chromosome numbers
Agerbirk, Niels, Olsen, C. E., Chew, F. S. & Ørgaard, Marian, 2010, In: Journal of Agricultural and Food Chemistry. 58, 8, p. 4693-4700 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Øvelsesvejledning: Biokemi 1
Bjergegaard, C. & Agerbirk, Niels, 2010, 6. ed. Institut for Grundvidenskab og Miljø, Københavns Universitet. 125 p.Research output: Book/Report › Compendium/lecture notes › Education
- 2009
- Published
Indole glucosinolate breakdown and its biological effects
Agerbirk, Niels, De Vos, M., Kim, J. H. & Jander, G., 2009, In: Phytochemistry Reviews. 8, 1, p. 101-120 20 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Øvelsesvejledning: Biokemi 1
Bjergegaard, C. & Agerbirk, Niels, 2009, 5. ed. Institut for Grundvidenskab og Miljø, Københavns Universitet.Research output: Book/Report › Compendium/lecture notes › Education
- 2008
- Published
Sinapis phylogeny and evolution of glucosinolates and specific nitrile degrading enzymes
Agerbirk, Niels, Warwick, S. I., Hansen, Paul Robert & Olsen, C. E., 2008, In: Phytochemistry. 69, 17, p. 2937-2949 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Aurora-larvens korte liv fulgt i en vindueskarm: nogle iagttagelser af larvens adfærd og udvikling
Agerbirk, Niels & Jørgensen, Kirsten, 2008, In: Lepidoptera. 9, 6, p. 176-180 5 p.Research output: Contribution to journal › Journal article › Research
- Published
Evolution of glucosinolates in Sinapis & Brassica
Agerbirk, Niels, Warwick, S. I. & Olsen, C. E., 2008.Research output: Contribution to conference › Poster › Research
- Published
Exercises in enzymology and experimental biochemistry: accuracy and precision in enzymology, activity coefficients in enzymology, macromolecule-ligand dissociation constants
Agerbirk, Niels, 2008, Department of Natural Sciences, University of Copenhagen. 34 p.Research output: Book/Report › Compendium/lecture notes › Education
- Published
Øvelsesvejledning: Biokemi 1
Bjergegaard, C. & Agerbirk, Niels, 2008, 4 ed. Institut for Grundvidenskab og Miljø, Københavns Universitet.Research output: Book/Report › Compendium/lecture notes › Education
ID: 4236364
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351
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Diversified glucosinolate metabolism: biosynthesis of hydrogen cyanide and of the hydroxynitrile glucoside alliarinoside in relation to sinigrin metabolism in Alliaria petiolata
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
305
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Glucosinolate structural diversity, identification, chemical synthesis and metabolism in plants
Research output: Contribution to journal › Review › Research › peer-review
Published -
294
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Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative trnscriptome analysis
Research output: Contribution to journal › Journal article › Research › peer-review
Published