The gut microbiota of soil organisms show species-specific responses to liming

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Standard

The gut microbiota of soil organisms show species-specific responses to liming. / Ding, Jing; Zhu, Dong; Li, Hu; Ding, Kai; Chen, Qing Lin; Lassen, Simon Bo; Ke, Xin; O'Connor, Patrick; Zhu, Yong Guan.

I: Science of the Total Environment, Bind 659, 01.04.2019, s. 715-723.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Ding, J, Zhu, D, Li, H, Ding, K, Chen, QL, Lassen, SB, Ke, X, O'Connor, P & Zhu, YG 2019, 'The gut microbiota of soil organisms show species-specific responses to liming', Science of the Total Environment, bind 659, s. 715-723. https://doi.org/10.1016/j.scitotenv.2018.12.445

APA

Ding, J., Zhu, D., Li, H., Ding, K., Chen, Q. L., Lassen, S. B., Ke, X., O'Connor, P., & Zhu, Y. G. (2019). The gut microbiota of soil organisms show species-specific responses to liming. Science of the Total Environment, 659, 715-723. https://doi.org/10.1016/j.scitotenv.2018.12.445

Vancouver

Ding J, Zhu D, Li H, Ding K, Chen QL, Lassen SB o.a. The gut microbiota of soil organisms show species-specific responses to liming. Science of the Total Environment. 2019 apr. 1;659:715-723. https://doi.org/10.1016/j.scitotenv.2018.12.445

Author

Ding, Jing ; Zhu, Dong ; Li, Hu ; Ding, Kai ; Chen, Qing Lin ; Lassen, Simon Bo ; Ke, Xin ; O'Connor, Patrick ; Zhu, Yong Guan. / The gut microbiota of soil organisms show species-specific responses to liming. I: Science of the Total Environment. 2019 ; Bind 659. s. 715-723.

Bibtex

@article{ccd2afe9ef9f48a39385e56806cda0d8,
title = "The gut microbiota of soil organisms show species-specific responses to liming",
abstract = "Liming is a common agronomic practice used for alleviating soil acidification to improve plant growth. However, it is still unclear how liming can affect the gut microbiota composition of soil fauna, and subsequently the nutrient cycling and litter decomposition mediated by soil fauna. In the present study the effect of liming on the gut microbiota of two types of soil fauna, Folsomia candida, and Enchytraeus crypticus was investigated by using 16S rRNA gene high-throughput sequencing. The results revealed that there are differences between the gut microbial communities of the two types of soil fauna as well as between the gut microbiome of the soil fauna and the surrounding soil. Enterobacteriaceae and Bacillaceae were the predominant families in the gut microbiota of E. crypticus, while Rickettsiaceae and Moraxellaceae were the predominant families in the gut microbiota of F. candida. Liming affected the gut microbiota of E. crypticus at both the taxonomical and core microbiota level. The gut microbiota of F. candida was not affected by liming. Structural equation models suggest that 97% of the variation in the E. crypticus gut microbiota could be explained by liming-induced changes in soil properties and the soil microbial community. The indirect effects of liming, caused by a shift in the soil microbial community, contributed more in reshaping the gut microbiota of E. crypticus than the direct effects of the changed soil properties did. These findings suggest that the effects of liming on the gut microbiota composition in soil fauna are species-specific and are likely dependent on the response of the host to changes in soil properties and the soil microbial community.",
keywords = "High-throughput sequencing, Host-associated microbiome, Lime, Soil pH",
author = "Jing Ding and Dong Zhu and Hu Li and Kai Ding and Chen, {Qing Lin} and Lassen, {Simon Bo} and Xin Ke and Patrick O'Connor and Zhu, {Yong Guan}",
year = "2019",
month = apr,
day = "1",
doi = "10.1016/j.scitotenv.2018.12.445",
language = "English",
volume = "659",
pages = "715--723",
journal = "Science of the Total Environment",
issn = "0048-9697",
publisher = "Elsevier",

}

RIS

TY - JOUR

T1 - The gut microbiota of soil organisms show species-specific responses to liming

AU - Ding, Jing

AU - Zhu, Dong

AU - Li, Hu

AU - Ding, Kai

AU - Chen, Qing Lin

AU - Lassen, Simon Bo

AU - Ke, Xin

AU - O'Connor, Patrick

AU - Zhu, Yong Guan

PY - 2019/4/1

Y1 - 2019/4/1

N2 - Liming is a common agronomic practice used for alleviating soil acidification to improve plant growth. However, it is still unclear how liming can affect the gut microbiota composition of soil fauna, and subsequently the nutrient cycling and litter decomposition mediated by soil fauna. In the present study the effect of liming on the gut microbiota of two types of soil fauna, Folsomia candida, and Enchytraeus crypticus was investigated by using 16S rRNA gene high-throughput sequencing. The results revealed that there are differences between the gut microbial communities of the two types of soil fauna as well as between the gut microbiome of the soil fauna and the surrounding soil. Enterobacteriaceae and Bacillaceae were the predominant families in the gut microbiota of E. crypticus, while Rickettsiaceae and Moraxellaceae were the predominant families in the gut microbiota of F. candida. Liming affected the gut microbiota of E. crypticus at both the taxonomical and core microbiota level. The gut microbiota of F. candida was not affected by liming. Structural equation models suggest that 97% of the variation in the E. crypticus gut microbiota could be explained by liming-induced changes in soil properties and the soil microbial community. The indirect effects of liming, caused by a shift in the soil microbial community, contributed more in reshaping the gut microbiota of E. crypticus than the direct effects of the changed soil properties did. These findings suggest that the effects of liming on the gut microbiota composition in soil fauna are species-specific and are likely dependent on the response of the host to changes in soil properties and the soil microbial community.

AB - Liming is a common agronomic practice used for alleviating soil acidification to improve plant growth. However, it is still unclear how liming can affect the gut microbiota composition of soil fauna, and subsequently the nutrient cycling and litter decomposition mediated by soil fauna. In the present study the effect of liming on the gut microbiota of two types of soil fauna, Folsomia candida, and Enchytraeus crypticus was investigated by using 16S rRNA gene high-throughput sequencing. The results revealed that there are differences between the gut microbial communities of the two types of soil fauna as well as between the gut microbiome of the soil fauna and the surrounding soil. Enterobacteriaceae and Bacillaceae were the predominant families in the gut microbiota of E. crypticus, while Rickettsiaceae and Moraxellaceae were the predominant families in the gut microbiota of F. candida. Liming affected the gut microbiota of E. crypticus at both the taxonomical and core microbiota level. The gut microbiota of F. candida was not affected by liming. Structural equation models suggest that 97% of the variation in the E. crypticus gut microbiota could be explained by liming-induced changes in soil properties and the soil microbial community. The indirect effects of liming, caused by a shift in the soil microbial community, contributed more in reshaping the gut microbiota of E. crypticus than the direct effects of the changed soil properties did. These findings suggest that the effects of liming on the gut microbiota composition in soil fauna are species-specific and are likely dependent on the response of the host to changes in soil properties and the soil microbial community.

KW - High-throughput sequencing

KW - Host-associated microbiome

KW - Lime

KW - Soil pH

UR - http://www.scopus.com/inward/record.url?scp=85059349286&partnerID=8YFLogxK

U2 - 10.1016/j.scitotenv.2018.12.445

DO - 10.1016/j.scitotenv.2018.12.445

M3 - Journal article

C2 - 31096401

AN - SCOPUS:85059349286

VL - 659

SP - 715

EP - 723

JO - Science of the Total Environment

JF - Science of the Total Environment

SN - 0048-9697

ER -

ID: 216209918