Starch from 15 different rice genotypes with amylose content (AC) ranging 1.5%–30.6% were investigated for relationships between structures and properties. For parameters related to the granular level, the most important relationships were found for AC, average chain lengths (ACL) of the amylopectin (AP) fb₁ chains having a length of DP 13-24, crystallinity, and the thickness of the crystalline (d_c) and the amorphous lamellae (d_a) of the starch granule. AC and d_c were negatively correlated with the peak gelatinization temperature (T_p), thermal enthalpy (ΔH), and peak viscosity (PV), but positively correlated with swelling power. ACL_fb1 and d_a, as compared to AC and d_c, had the opposite effects on these parameters, demonstrating important roles of specific molecular and lamellar structures on the starch granular stability. For the gelatinized systems, increasing ACL_fb1 decreased retrogradation, while AC increased retrogradation by increasing the resistant starch (RS) content, storage modulus (G′), and setback (SB).