Section for Plant Biochemistry

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  1. 2024
  2. Published

    "Seeing" the electromagnetic spectrum: spotlight on the cryptochrome photocycle

    Aguida, B., Babo, J., Baouz, S., Jourdan, N., Procopio, M., El-Esawi, M. A., Engle, D., Mills, S., Wenkel, Stephan, Huck, A., Berg-Sørensen, K., Kampranis, Sotirios, Link, J. & Ahmad, M., 2024, In: Frontiers in Plant Science. 15, 20 p., 1340304.

    Research output: Contribution to journal › Review › Research › peer-review

  3. Published

    Biosynthesis of chlorophyll c in a dinoflagellate and heterologous production in planta

    Jinkerson, R. E., Poveda Huertes, Daniel, Cooney, E. C., Cho, A., Ochoa-Fernandez, R., Keeling, P. J., Xiang, T. & Andersen-Ranberg, Johan, 2024, In: Current Biology. 34, 3, p. 594-605.e4 17 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Eremane, viscidane and isozizaene diterpenoids from the leaves of Eremophila rigida and their absolute configurations

    Liang, Chao, Ndi, C., Semple, S., Buirchell, B., Coriani, S., Møller, Birger Lindberg & Stærk, Dan, 2024, In: Phytochemistry. 219, 16 p., 113972.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Essentials in the acquisition, interpretation, and reporting of plant metabolite profiles

    Çiçek, S. S., Mangoni, A., Hanschen, F. S., Agerbirk, Niels & Zidorn, C., 2024, In: Phytochemistry. 220, 16 p., 114004.

    Research output: Contribution to journal › Review › Research › peer-review

  6. Published

    Exploring the genetic architecture of specialized metabolism in Arabidopsis seeds

    Straube, Henryk, 2024, In: Plant Physiology. p. 1266-1267 2 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Identification of Clubroot-Resistant Germplasm in a Radish (Raphanus sativus L.) Core Collection

    Ma, Y., Wang, H., Song, J., Yang, W., Jia, H., Agerbirk, Niels, Chen, Y., Li, C., Piao, Y., Li, S. & Zhang, X., 2024, In: Agronomy. 14, 1, 12 p., 157.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. Published

    Identification of nitric oxide mediated defense signaling and its microRNA mediated regulation during Phytophthora capsici infection in black pepper

    Asha, S., Kattupalli, D., Vijayanathan, Mallika & Soniya, E. V., 2024, In: Physiology and Molecular Biology of Plants. 30, p. 33-47 15 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Integrative transcript to proteome analysis of barley during Ramularia collo-cygni leaf spot development identified several proteins that are related to fungal recognition and infection responses

    Lemcke, René, Kamble, M., Schneider, S., Lyngkjær, M. F., Radutoiu, S. & Wienkoop, S., 2024, In: Frontiers in Plant Science. 15, 10 p., 1367271.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Oxetane ring formation in taxol biosynthesis is catalyzed by a bifunctional cytochrome P450 enzyme

    Zhao, Yong, zpm303, zpm303, Xie, Yuman, Duan, Y. T., Andeadelli, A., Pateraki, Irini, Makris, A. M., Pomorski, Thomas Guenther, Stærk, Dan & Kampranis, Sotirios, 2024, In: Journal of the American Chemical Society. 146, p. 801-810

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. E-pub ahead of print

    Site-directed genotype screening for elimination of antinutritional saponins in quinoa seeds identifies TSARL1 as a master controller of saponin biosynthesis selectively in seeds

    Trinh, Mai Duy Luu, Visintainer, Davide, Günther, Jan, Østerberg, J. T., Rodrigues da Fonseca, Rute Andreia, Fondevilla, S., Moog, Max William, Luo, Guangbin, Nørrevang, Anton Frisgaard, Crocoll, C., Nielsen, P. V., Jacobsen, S., Wendt, T., Bak, Søren, Lopez Marques, Rosa Laura & Palmgren, Michael, 2024, (E-pub ahead of print) In: Plant Biotechnology Journal. 19 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Published

    Triterpene tales: Two genes involved in Nicotiana attenuata herbivore defense

    Straube, Henryk, 2024, In: Plant Physiology. 194, 4, p. 2191-2193 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Weed control with laser beams: An eco-friendly alternative to herbicides and mechanical weed control

    Andreasen, Christian, Rakhmatulin, I., Saberi, M. & Zhang, Zongyi, 2024, In: A I P Conference Proceedings Series. 294, 1, 6 p., 040001.

    Research output: Contribution to journal › Conference article › Research › peer-review

  14. Published

    Whole-cell biocatalytic synthesis of terpenoids bypasses the isoprene rule

    Wang, Lina, 2024, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 132 p.

    Research output: Book/Report › Ph.D. thesis › Research

  15. 2023
  16. Published

    Lessons learned from metabolic engineering in hairy roots: Transcriptome and metabolic profile changes caused by Rhizobium-mediated plant transformation in Cucurbitaceae species

    Almeida, A., Favero, Bruno Trevenzoli, Dong, L., Cárdenas, Pablo D., Saenz-Mata, J., Lütken, Henrik Vlk & Bak, Søren, Aug 2023, In: Plant Physiology and Biochemistry. 201, 8 p., 107797.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    A Genome-Wide Identification and Comparative Analysis of the Heavy-Metal-Associated Gene Family in Cucurbitaceae Species and Their Role in Cucurbita pepo under Arsenic Stress

    Flores-Iga, G., Lopez-Ortiz, C., Gracia-Rodriguez, C., Almeida, A., Nimmakayala, P., Reddy, U. K. & Balagurusamy, N., 2023, In: Genes. 14, 10, 19 p., 1877.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Published

    A glycoside-specific glycosyltransferase transfers apiose to flavonoid glucosides in celery

    Straube, Henryk, 2023, In: Plant Physiology. 193, 3, p. 1715-1717 3 p.

    Research output: Contribution to journal › Comment/debate › Research

  19. Published

    Am-aza-ing antidiabetic: Mulberry dehydrogenase MnGUTB1 contributes to the biosynthesis of 1-deoxynojirimycin

    Straube, Henryk, 2023, In: Plant Physiology. 192, 2, p. 700-702 3 p.

    Research output: Contribution to journal › Editorial › Research › peer-review

  20. Published

    An improved Nicotiana benthamiana bioproduction chassis provides novel insights into nicotine biosynthesis

    Vollheyde, K., Dudley, Q. M., Yang, T., Oz, M. T., Mancinotti, Davide, Fedi, M. O., Heavens, D., Linsmith, G., Chhetry, M., Smedley, M. A., Harwood, W. A., Swarbreck, D., Geu-Flores, Fernando & Patron, N. J., 2023, In: New Phytologist. 240, 1, p. 302-317 16 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. Published

    Biocontrol effect of Clonostachys rosea on Fusarium graminearum infection and mycotoxin detoxification in oat (Avena sativa)

    Khairullina, A., Micic, Nikola, Jørgensen, Hans Jørgen Lyngs, Bjarnholt, Nanna, Bülow, L., Collinge, David B. & Jensen, Birgit, 2023, In: Plants. 12, 3, 16 p., 500.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Published

    Biosynthesis and biotechnological production of the anti-obesity agent celastrol

    Zhao, Yong, Hansen, N. L., Duan, Yaotao, Prasad, M., Motawie, Mohammed Saddik, Møller, Birger Lindberg, Pateraki, Irini, Stærk, Dan, Bak, Søren, Miettinen, Karel & Kampranis, Sotirios, 2023, In: Nature Chemistry. 15, p. 1236–1246

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Characterization of serrulatane diterpenoids in Eremophila phyllopoda subsp. phyllopoda by triple high-resolution α-glucosidase/PTP1B/radical scavenging profiling, NMR spectroscopy, DFT-GIAO NMR, and electronic circular dichroism calculations

    Liang, Chao, Ndi, C., Kjaerulff, Louise, Semple, S., Buirchell, B., Coriani, S., Møller, Birger Lindberg & Stærk, Dan, 2023, In: Journal of Natural Products. 86, 4, p. 694–709

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Published

    Content, Composition, and Biosynthesis of Anthocyanin in Fragaria Species: A Review

    Cai, C., Shen, Jincheng, Chen, L. & Li, J., 2023, In: HortScience. 58, 9, p. 988-995 8 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Published

    Controlling flowering time of Medicago sativa (alfalfa)

    Chiurazzi, Maurizio Junior, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 147 p.

    Research output: Book/Report › Ph.D. thesis › Research

  26. Published

    Dynamic Metabolons in the Anthocyanin Pathway Studied by Proximity Labeling

    Aravena Calvo, Javiera Patricia, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 151 p.

    Research output: Book/Report › Ph.D. thesis › Research

  27. Published

    Exploiting photosynthesis-driven P450 activity to produce indican in tobacco chloroplasts

    Mellor, Silas Busck, Behrendorff, J. B. Y. H., Ipsen, J. O., Crocoll, C., Laursen, Tomas, Gillam, E. M. J. & Pribil, Mathias, 2023, In: Frontiers in Plant Science. 13, 17 p., 1049177.

    Research output: Contribution to journal › Journal article › Research › peer-review

  28. Published

    Hairy Root Induction of Taxus baccata L. by Natural Transformation with Rhizobium rhizogenes

    He, Junou, Alves Plácido, João Paulo, Pateraki, Irini, Kampranis, Sotirios, Favero, Bruno Trevenzoli & Lütken, Henrik Vlk, 2023, In: Horticulturae. 9, 1, 13 p., 4.

    Research output: Contribution to journal › Journal article › Research › peer-review

  29. Published

    High-amylose starch: Structure, functionality and applications

    Zhong, Yuyue, Tai, L., Blennow, Andreas, Ding, Li, Herburger, K., Qu, J., Xin, Anzhou, Guo, D., Hebelstrup, K. H. & Liu, X., 2023, In: Critical Reviews in Food Science and Nutrition. 63, 27, p. 8568-8590 23 p.

    Research output: Contribution to journal › Review › Research › peer-review

  30. Published

    Identification of new PTP1B-inhibiting decipiene diterpenoid esters from Eremophila clarkei by high-resolution PTP1B inhibition profiling, enzyme kinetics analysis, and molecular docking

    Liang, Chao, Zang, J., Ndi, C., Semple, S., Buirchell, B., Coriani, S., Møller, Birger Lindberg & Stærk, Dan, 2023, In: Bioorganic Chemistry. 139, 15 p., 106744.

    Research output: Contribution to journal › Journal article › Research › peer-review

  31. Published

    In-depth Investigation on Triterpenoid Production from the Desert Plants Aloe vera (L.) Burm.f. and Opuntia robusta JC Wendl. Prompted by Their Low Specific Methane Production

    Almeida, A., Raadam, Morten Hessellund, Lopez-Villanueva, A., Omar Hernandez-De Lira, I. & Khakimov, Bekzod, 2023, In: BioEnergy Research. 16, p. 898–911

    Research output: Contribution to journal › Journal article › Research › peer-review

  32. Published

    Investigation of the spatial distribution of airborne polycyclic aromatic hydrocarbons using Rhytidiadelphus squarrosus in Tórshavn, Faroe Islands

    Cwalina, E., Kilpinen, Kristoffer Skovlund, Ryde, Ingvild, Nielsen, Nikoline Juul, Christiansen, S. & Christensen, Jan H., 2023, In: Environmental Science and Pollution Research. 30, p. 84663-84673

    Research output: Contribution to journal › Journal article › Research › peer-review

  33. Published

    Leaves of Cannabis sativa and their trichomes studied by DESI and MALDI mass spectrometry imaging for their contents of cannabinoids and flavonoids

    Lorensen, Marcus Daniel B B, Hayat, S. Y., Wellner, N., Bjarnholt, Nanna & Janfelt, Christian, 2023, In: Phytochemical Analysis. 34, 3, p. 269-279

    Research output: Contribution to journal › Journal article › Research › peer-review

  34. Published

    New genes on the block: Neofunctionalization of tandem duplicate genes with putative new functions in Arabidopsis

    Ugalde, J. M. & Straube, Henryk, 2023, In: Plant Physiology. 192, 4, p. 2574-2576 3 p., 271.

    Research output: Contribution to journal › Editorial › Research › peer-review

  35. Published

    New meets old - glutathione conjugates and mass spectrometry imaging as tools for exploring plant glutathione transferases

    Micic, Nikola, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 147 p.

    Research output: Book/Report › Ph.D. thesis › Research

  36. Published

    New methods for sorghum transformation in temperate climates

    Miller, Sara, Rønager, Asta Holmelund, Holm, R., Fontanet-Manzaneque, J. B., Caño-Delgado, A. I. & Bjarnholt, Nanna, 2023, In: AoB PLANTS. 15, 3, 14 p., plad030.

    Research output: Contribution to journal › Review › Research › peer-review

  37. Published

    Novel transformation strategies improve efficiency up to 10-fold in stramenopile algae

    Poveda Huertes, Daniel, Patwari, P., Günther, Jan, Fabris, M. & Andersen-Ranberg, Johan, 2023, In: Algal Research. 74, 11 p., 103165.

    Research output: Contribution to journal › Journal article › Research › peer-review

  38. Published

    Orthogonal reversed-phase C18 and pentafluorophenyl HPLC separation for phytochemical profiling of serrulatanes in Eremophila denticulata

    Zhao, Yong, Li, T., Kjaerulff, Louise, Venter, H., Coriani, S., Møller, Birger Lindberg, Semple, S. & Stærk, Dan, 2023, In: Journal of Natural Products. 86, 12, p. 2638-2650

    Research output: Contribution to journal › Journal article › Research › peer-review

  39. Published

    Overexpression of Physcomitrium patens cell cycle regulators leads to larger gametophytes

    Peramuna, A., López, C. Q., Rios, F. J. A., Bae, H., Fangel, J. U., Batth, R., Harholt, J. & Simonsen, H. T., 2023, In: Scientific Reports. 13, 1, 10 p., 4301.

    Research output: Contribution to journal › Journal article › Research › peer-review

  40. Published

    Pathway Discovery and Engineering of Quinolizidine Alkaloid Biosynthesis in Narrow-Leafed Lupin

    Mancinotti, Davide, 2023, 172 p.

    Research output: Book/Report › Ph.D. thesis › Research

  41. Published

    Peeling back the layers: Unveiling the biochemistry of health-promoting molecules in orange fruits

    Straube, Henryk, 2023, In: Plant Physiology. 192, 4, 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  42. Published

    Phytoalexins of the crucifer Barbarea vulgaris: Structural profile and correlation with glucosinolate turnover

    Cárdenas, Pablo D., Landtved, J. P., Larsen, S. H., Lindegaard, Nicolai, Wøhlk, S., Jensen, Karen Rysbjerg, Pattison, David, Burow, Meike, Bak, Søren, Crocoll, C. & Agerbirk, Niels, 2023, In: Phytochemistry. 213, 17 p., 113742.

    Research output: Contribution to journal › Journal article › Research › peer-review

  43. Published

    Pollen-feeding delays reproductive senescence and maintains toxicity of Heliconius erato

    Castro, E. C. P. D., McPherson, J., Jullian, G., Mattila, A. L. K., Bak, Søren, Montgomery, S. H. & Jiggins, C., 2023, bioRxiv, 18 p.

    Research output: Working paper › Preprint › Research

  44. Published

    Polypharmacology-labeled molecular networking: An analytical technology workflow for accelerated identification of multiple bioactive constituents in complex extracts

    Zhao, Yong, Gericke, Oliver, Li, T., Kjaerulff, Louise, Kongstad, Kenneth Thermann, Heskes, A. M., Møller, Birger Lindberg, Jørgensen, Flemming Steen, Venter, H., Coriani, S., Semple, S. J. & Stærk, Dan, 2023, In: Analytical Chemistry. 95, 9, p. 4381-4389 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  45. Published

    Recruitment of distinct UDP-glycosyltransferase families demonstrates dynamic evolution of chemical defense within Eucalyptus L'Hér

    Hansen, Cecilie Ida Cetti, Sørensen, Mette, Bellucci, M., Brandt, W., Olsen, C. E., Goodger, J. Q. D., Woodrow, I. E., Møller, Birger Lindberg & Neilson, Elizabeth Heather Jakobsen, 2023, In: New Phytologist. 237, 3, p. 999-1013

    Research output: Contribution to journal › Journal article › Research › peer-review

  46. Published

    Rooted in chemistry: 2 secoiridoid glucosides promoting fungal symbiosis

    Straube, Henryk, 2023, In: Plant Physiology. 193, 4, p. 2257-2259

    Research output: Contribution to journal › Journal article › Research › peer-review

  47. Published

    Secondary Metabolites with Anti-Inflammatory Activity from Laurencia majuscula Collected in the Red Sea

    Tammam, M. A., Daskalaki, M. G. G., Tsoureas, N., Kolliniati, O., Mahdy, A., Kampranis, Sotirios, Tsatsanis, C., Roussis, V. & Ioannou, E., 2023, In: Marine Drugs. 21, 2, 15 p., 79.

    Research output: Contribution to journal › Journal article › Research › peer-review

  48. Published

    Self-devouring for survival: The influence of tissue-specific autophagy on seeds

    Straube, Henryk, 2023, In: Plant Physiology. 193, p. 166-168

    Research output: Contribution to journal › Journal article › Research › peer-review

  49. Published

    Spatial localization of monoterpenoid indole alkaloids in Rauvolfia tetraphylla by high resolution mass spectrometry imaging

    Lorensen, Marcus Daniel B B, Bjarnholt, Nanna, St-Pierre, B., Heinicke, S., Courdavault, V., O'Connor, S. & Janfelt, Christian, 2023, In: Phytochemistry. 209, 15 p., 113620.

    Research output: Contribution to journal › Journal article › Research › peer-review

  50. Published

    Species-specific dynamics of specialized metabolism in germinating sorghum grain revealed by temporal and tissue-resolved transcriptomics and metabolomics

    Liu, H., Micic, Nikola, Miller, Sara, Crocoll, C. & Bjarnholt, Nanna, 2023, In: Plant Physiology and Biochemistry. 196, p. 807-820 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  51. Published

    Structure of SALL4 zinc finger domain reveals link between AT-rich DNA binding and Okihiro syndrome

    Watson, J. A., Pantier, R., Jayachandran, U., Chhatbar, K., Alexander-Howden, B., Kruusvee, Valdeko, Prendecki, M., Bird, A. & Cook, A. G., 2023, In: Life Science Alliance. 6, 3, 13 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  52. Published

    Studies on the biosynthesis of natural products in faba bean

    Xia, Xinxing, 2023, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen. 79 p.

    Research output: Book/Report › Ph.D. thesis › Research

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