The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

Research output: Contribution to journal › Journal article › Research › peer-review

Standard

The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry. / Byrne, Stephen L.; Erthmann, Pernille Østerbye; Agerbirk, Niels; Bak, Søren; Hauser, Thure Pavlo; Nagy, Istvan; Paina, Cristiana; Asp, Torben.

In: Scientific Reports, Vol. 7, 40728, 2017.

Research output: Contribution to journal › Journal article › Research › peer-review

Harvard

Byrne, SL, Erthmann, PØ, Agerbirk, N, Bak, S, Hauser, TP, Nagy, I, Paina, C & Asp, T 2017, 'The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry', Scientific Reports, vol. 7, 40728. https://doi.org/10.1038/srep40728

APA

Byrne, S. L., Erthmann, P. Ø., Agerbirk, N., Bak, S., Hauser, T. P., Nagy, I., Paina, C., & Asp, T. (2017). The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry. Scientific Reports, 7, [40728]. https://doi.org/10.1038/srep40728

Vancouver

Byrne SL, Erthmann PØ, Agerbirk N, Bak S, Hauser TP, Nagy I et al. The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry. Scientific Reports. 2017;7. 40728. https://doi.org/10.1038/srep40728

Author

Byrne, Stephen L. ; Erthmann, Pernille Østerbye ; Agerbirk, Niels ; Bak, Søren ; Hauser, Thure Pavlo ; Nagy, Istvan ; Paina, Cristiana ; Asp, Torben. / The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry. In: Scientific Reports. 2017 ; Vol. 7.

Bibtex

@article{0c0f5e2877f94cc8a3baae0d8c6bbad5,
title = "The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry",
abstract = "The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds,due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. Onespecies, B. vulgaris, includes two {\textquoteleft}types{\textquoteright}, G-type and P-type that differ in trichome density, and theirglucosinolate and saponin profiles. A key difference is the stereochemistry of hydroxylation of theircommon phenethylglucosinolate backbone, leading to epimeric glucobarbarins. Here we report a draftgenome sequence of the G-type, and re-sequencing of the P-type for comparison. This enables us toidentify candidate genes underlying glucosinolate diversity, trichome density, and study the geneticsof biochemical variation for glucosinolate and saponins. B. vulgaris is resistant to the diamondbackmoth, and may be exploited for “dead-end” trap cropping where glucosinolates stimulate ovipositionand saponins deter larvae to the extent that they die. The B. vulgaris genome will promote the study ofmechanisms in ecological biochemistry to benefit crop resistance breeding.",
author = "Byrne, {Stephen L.} and Erthmann, {Pernille {\O}sterbye} and Niels Agerbirk and S{\o}ren Bak and Hauser, {Thure Pavlo} and Istvan Nagy and Cristiana Paina and Torben Asp",
year = "2017",
doi = "10.1038/srep40728",
language = "English",
volume = "7",
journal = "Scientific Reports",
issn = "2045-2322",
publisher = "nature publishing group",

}

RIS

TY - JOUR

T1 - The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

AU - Byrne, Stephen L.

AU - Erthmann, Pernille Østerbye

AU - Agerbirk, Niels

AU - Bak, Søren

AU - Hauser, Thure Pavlo

AU - Nagy, Istvan

AU - Paina, Cristiana

AU - Asp, Torben

PY - 2017

Y1 - 2017

N2 - The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds,due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. Onespecies, B. vulgaris, includes two ‘types’, G-type and P-type that differ in trichome density, and theirglucosinolate and saponin profiles. A key difference is the stereochemistry of hydroxylation of theircommon phenethylglucosinolate backbone, leading to epimeric glucobarbarins. Here we report a draftgenome sequence of the G-type, and re-sequencing of the P-type for comparison. This enables us toidentify candidate genes underlying glucosinolate diversity, trichome density, and study the geneticsof biochemical variation for glucosinolate and saponins. B. vulgaris is resistant to the diamondbackmoth, and may be exploited for “dead-end” trap cropping where glucosinolates stimulate ovipositionand saponins deter larvae to the extent that they die. The B. vulgaris genome will promote the study ofmechanisms in ecological biochemistry to benefit crop resistance breeding.

AB - The genus Barbarea has emerged as a model for evolution and ecology of plant defense compounds,due to its unusual glucosinolate profile and production of saponins, unique to the Brassicaceae. Onespecies, B. vulgaris, includes two ‘types’, G-type and P-type that differ in trichome density, and theirglucosinolate and saponin profiles. A key difference is the stereochemistry of hydroxylation of theircommon phenethylglucosinolate backbone, leading to epimeric glucobarbarins. Here we report a draftgenome sequence of the G-type, and re-sequencing of the P-type for comparison. This enables us toidentify candidate genes underlying glucosinolate diversity, trichome density, and study the geneticsof biochemical variation for glucosinolate and saponins. B. vulgaris is resistant to the diamondbackmoth, and may be exploited for “dead-end” trap cropping where glucosinolates stimulate ovipositionand saponins deter larvae to the extent that they die. The B. vulgaris genome will promote the study ofmechanisms in ecological biochemistry to benefit crop resistance breeding.

U2 - 10.1038/srep40728

DO - 10.1038/srep40728

M3 - Journal article

C2 - 28094805

VL - 7

JO - Scientific Reports

JF - Scientific Reports

SN - 2045-2322

M1 - 40728

ER -

ID: 172091011