Sebastian Marquardt

Sebastian Marquardt

Associate Professor - Promotion Programme


  1. 2023
  2. Published

    A ribose world: current status and future challenges of plant RNA biology

    Marquardt, Sebastian & Manavella, P. A., 2023, In: Journal of Experimental Botany. 74, 7, p. 2203-2207 5 p.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    Cotranscriptional RNA processing and modification in plants

    Marquardt, Sebastian, Petrillo, E. & Manavella, P. A., 2023, In: The Plant Cell. 35, 6, p. 1654-1670

    Research output: Contribution to journalJournal articlepeer-review

  4. Published

    Functional Variation in the Non-Coding Genome: Molecular Implications for Food Security

    Gullotta, Giorgio, Korte, A. & Marquardt, Sebastian, 2023, In: Journal of Experimental Botany. 74, 7, p. 2338–2351 14 p.

    Research output: Contribution to journalReviewpeer-review

  5. Published

    LncRNA FLAIL affects alternative splicing and represses flowering in Arabidopsis

    Jin, Yu, Ivanov, M., Dittrich, A. N., Nelson, A. D. L. & Marquardt, Sebastian, 2023, In: EMBO Journal. 42, 11, 21 p., e110921.

    Research output: Contribution to journalJournal articlepeer-review

  6. 2022
  7. Published

    Histone chaperone ASF1 mediates H3.3-H4 deposition in Arabidopsis

    Zhong, Z., Wang, Y., Wang, M., Yang, F., Thomas, Quentin, Xue, Y., Zhang, Y., Liu, W., Jami-Alahmadi, Y., Xu, L., Feng, S., Marquardt, Sebastian, Wohlschlegel, J. A., Ausin, I. & Jacobsen, S. E., 2022, In: Nature Communications. 13, 15 p., 6970.

    Research output: Contribution to journalJournal articlepeer-review

  8. Published

    R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants

    Gonzalo, L., Tossolini, I., Gulanicz, T., Cambiagno, D. A., Kasprowicz-Maluski, A., Smolinski, D. J., Mammarella, M. F., Ariel, F. D., Marquardt, Sebastian, Szweykowska-Kulinska, Z., Jarmolowski, A. & Manavella, P. A., 2022, In: Nature Plants. 8, 4, p. 402-418 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  9. 2021
  10. Published

    From Single Cells to Flowers – Biological Complexity Driving Plant Reproductive Development

    Schwarz, Isabel Aimèe, Neumann, M., Vega, R., Xu, X., Cornaro, L., Colombo, L., Vernoux, T., Xu, J., Marquardt, Sebastian & Kaufmann, K., 2021, Preprints.org.

    Research output: Working paperPreprintResearch

  11. Published

    Light-Dependent Translation Change of Arabidopsis psbA Correlates with RNA Structure Alterations at the Translation Initiation Region

    Gawroński, P., Enroth, Christel Hougård, Kindgren, P., Marquardt, Sebastian, Karpiński, S., Leister, D., Jensen, Poul Erik, Vinther, Jeppe & Scharff, L. B., 2021, In: Cells. 10, 2, 22 p., 322.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency

    Gowthaman, U., Ivanov, M., Schwarz, Isabel Aimèe, Patel, H. P., Müller, N. A., Garcia Pichardo, Desire, Lenstra, T. L. & Marquardt, Sebastian, 2021, In: EMBO Journal. 40, 23, 16 p., 108903.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

    Ivanov, M., Sandelin, Albin Gustav & Marquardt, Sebastian, 2021, In: BMC Bioinformatics. 22, 15 p., 290.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Winter fields antisense RNAs to kick off flowering

    Jin, Yu & Marquardt, Sebastian, 2021, In: Genes and Development. 38, 11-12, p. 785-786 2 p.

    Research output: Contribution to journalJournal articlepeer-review

  15. 2020
  16. Published

    A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription

    Leng, Xueyuan, Thomas, Quentin, Rasmussen, S. H. & Marquardt, Sebastian, 2020, In: Trends in Plant Science. 25, 8, p. 744-764

    Research output: Contribution to journalReviewpeer-review

  17. Published

    DNA Processing in the Context of Noncoding Transcription

    Gowthaman, U., Garcia Pichardo, Desire, Jin, Yu, Schwarz, Isabel Aimèe & Marquardt, Sebastian, 2020, In: Trends in Biochemical Sciences. 45, 12, p. 1009-1021

    Research output: Contribution to journalJournal articlepeer-review

  18. Published

    Dual sgRNA-based Targeted Deletion of Large Genomic Regions and Isolation of Heritable Cas9-free Mutants in Arabidopsis

    Jin, Yu & Marquardt, Sebastian, 2020, In: Bio-protocol. 10, 20, 17 p., 3796.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Native elongation transcript sequencing reveals temperature dependent dynamics of nascent RNAPII transcription in Arabidopsis

    Kindgren, P., Ivanov, M. & Marquardt, Sebastian, 2020, In: Nucleic Acids Symposium Series. 48, 5, p. 2332-2347 16 p.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    Organismal benefits of transcription speed control at gene boundaries

    Leng, Xueyuan, Ivanov, M., Kindgren, P., Malik, I., Thieffry, A., Brodersen, Peter, Sandelin, Albin Gustav, Kaplan, C. D. & Marquardt, Sebastian, 2020, In: EMBO Reports. 21, 4, 16 p., e49315.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis

    Thomas, Quentin, Ard, R., Liu, J., Li, B., Wang, J., Pelechano, V. & Marquardt, Sebastian, 2020, In: Nature Communications. 11, 1, p. 1-15

    Research output: Contribution to journalJournal articlepeer-review

  22. 2019
  23. Published

    Transcription-driven chromatin repression of Intragenic transcription start sites

    Nielsen, M., Ard, R., Leng, Xueyuan, Ivanov, M., Kindgren, P. R., Pelechano, V. & Marquardt, Sebastian, 1 Feb 2019, In: PLOS Genetics. 15, 2, p. 1-33 e1007969.

    Research output: Contribution to journalJournal articlepeer-review

  24. 2018
  25. Published

    Efficient termination of nuclear lncRNA transcription promotes mitochondrial genome maintenance

    du Mee, D. J. M., Ivanov, M., Parker, J. P., Buratowski, S. & Marquardt, Sebastian, 5 Mar 2018, In: eLife. 7, e31989.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

    Kindgren, P. R., Ard, R., Ivanov, M. & Marquardt, Sebastian, 2018, In: Nature Communications. 9, p. 1-11 4561.

    Research output: Contribution to journalJournal articlepeer-review

  27. 2017
  28. Published

    Emerging properties and functional consequences of noncoding transcription

    Ard, R., Allshire, R. C. & Marquardt, Sebastian, 2017, In: Genetics (Print). 207, 2, p. 357-367 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  29. 2014
  30. A chromatin-based mechanism for limiting divergent noncoding transcription

    Marquardt, Sebastian, Escalante-Chong, R., Pho, N., Wang, J., Churchman, L. S., Springer, M. & Buratowski, S., 2014, In: Cell. 157, 7, p. 1712-23 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  31. Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcription

    Marquardt, Sebastian, Raitskin, O., Wu, Z., Liu, F., Sun, Q. & Dean, C., 2014, In: Molecular Cell. 54, 1, p. 156-165 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  32. 2013
  33. Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination

    Hazelbaker, D. Z., Marquardt, Sebastian, Wlotzka, W. & Buratowski, S., 2013, In: Molecular Cell. 49, 1, p. 55-66 12 p.

    Research output: Contribution to journalJournal articlepeer-review

  34. 2011
  35. Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species

    Marquardt, Sebastian, Hazelbaker, D. Z. & Buratowski, S., May 2011, In: Transcription. 2, 3, p. 145-154 10 p.

    Research output: Contribution to journalJournal articlepeer-review

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