Niels Agerbirk

Niels Agerbirk

Associate Professor

Member of:


    1. 2023
    2. Published

      Phytoalexins of the crucifer Barbarea vulgaris: Structural profile and correlation with glucosinolate turnover

      Cárdenas, Pablo D., Landtved, J. P., Larsen, S. H., Lindegaard, Nicolai, Wøhlk, S., Jensen, Karen Rysbjerg, Pattison, David, Burow, Meike, Bak, Søren, Crocoll, C. & Agerbirk, Niels, 2023, In: Phytochemistry. 213, 17 p., 113742.

      Research output: Contribution to journalJournal articlepeer-review

    3. 2022
    4. Published

      Ancient biosynthesis in an oil crop: Glucosinulate profiles in Limnanthes alba and its relatives (Limnanthaceae, Brassicales)

      Agerbirk, Niels, Pattison, David, Mandáková, T., Lysak, M. A., Montaut, S. & Stærk, Dan, 2022, In: Journal of Agricultural and Food Chemistry. 70, p. 1134-1147

      Research output: Contribution to journalJournal articlepeer-review

    5. 2021
    6. Published
    7. Published

      Development and application of a virus-induced gene silencing protocol for the study of gene function in narrow-leafed lupin

      Mancinotti, Davide, Rodriguez, M. C., Frick, Karen Michiko, Dueholm, B., Jepsen, D. G., Agerbirk, Niels & Geu-Flores, Fernando, 2021, In: Plant Methods. 17, 1, 13 p., 131.

      Research output: Contribution to journalJournal articlepeer-review

    8. Published
    9. Published
    10. 2020
    11. Published

      Characterization of Arabidopsis CYP79C1 and CYP79C2 by Glucosinolate Pathway Engineering in Nicotiana benthamiana Shows Substrate Specificity Toward a Range of Aliphatic and Aromatic Amino Acids

      Wang, Cuiwei, Dissing, M. M., Agerbirk, Niels, Crocoll, C. & Halkier, Barbara Ann, 2020, In: Frontiers in Plant Science. 11, 13 p., 57.

      Research output: Contribution to journalJournal articlepeer-review

    12. Published

      Glucosinolate structural diversity, identification, chemical synthesis and metabolism in plants

      Blažević, I., Montaut, S., Burčul, F., Olsen, C. E., Burow, Meike, Rollin, P. & Agerbirk, Niels, 2020, In: Phytochemistry. 169, 57 p., 112100.

      Research output: Contribution to journalReviewpeer-review

    13. Published

      Making use of surplus sugar

      Agerbirk, Niels, 2020, In: Nature Chemical Biology. 16, 12, p. 1283-1284 2 p.

      Research output: Contribution to journalJournal articlepeer-review

    14. 2019
    15. Published

      A high-density genetic map and QTL mapping of leaf traits and glucosinolates in Barbarea vulgaris

      Liu, T. J., Zhang, Y. J., Agerbirk, Niels, Wang, H. P., Wei, X. C., Song, J. P., He, H. J., Zhao, X. Z., Zhang, X. H. & Li, X. X., 14 May 2019, In: BMC Genomics. 20, 1, p. 1-14 371.

      Research output: Contribution to journalJournal articlepeer-review

    16. Published

      Different herbivore responses to two co-occurring chemotypes of the wild crucifer Barbarea vulgaris

      Christensen, S., Enge, S., Jensen, Karen Rysbjerg, Müller, C., Kiær, Lars Pødenphant, Agerbirk, Niels, Heimes, C. & Hauser, T. P., 15 Feb 2019, In: Arthropod-Plant Interactions. 13, 1, p. 19-30 12 p.

      Research output: Contribution to journalJournal articlepeer-review

    17. 2018
    18. Published

      A tandem array of UDP-glycosyltransferases from the UGT73C subfamily glycosylate sapogenins, forming a spectrum of mono- and bisdesmosidic saponins

      Erthmann, P. Ø., Agerbirk, Niels & Bak, Søren, 2018, In: Plant Molecular Biology. 97, 1-2, p. 37-55 19 p.

      Research output: Contribution to journalJournal articlepeer-review

    19. Published

      Glucosinolate turnover in Brassicales species to an oxazolidin-2-one, formed via the 2-thione and without formation of thioamide

      Agerbirk, Niels, Matthes, A., Erthmann, P. Ø., Ugolini, L., Cinti, S., Lazaridi, E., Nuzillard, J., Mueller, C., Bak, Søren, Rollin, P. & Lazzeri, L., 2018, In: Phytochemistry. 153, p. 79-93

      Research output: Contribution to journalJournal articlepeer-review

    20. Published

      The Role of the Glucosinolate-Myrosinase System in Mediating Greater Resistance of Barbarea verna than B. vulgaris to Mamestra brassicae Larvae

      Mueller, C., Schulz, M., Pagnotta, E., Ugolini, L., Yang, T., Matthes, A., Lazzeri, L. & Agerbirk, Niels, 2018, In: Journal of Chemical Ecology. 44, 12, p. 1190-1205

      Research output: Contribution to journalJournal articlepeer-review

    21. 2017
    22. Published

      Hydroxyl and methoxyl derivatives of benzylglucosinolate in Lepidium densiflorum with hydrolysis to isothiocyanates and non-isothiocyanate products: substitution governs product type and mass spectral fragmentation

      Pagnotta, E., Agerbirk, Niels, Olsen, C. E., Ugolini, L., Cinti, S. & Lazzeri, L., 2017, In: Journal of Agricultural and Food Chemistry. 65, 15, p. 3167-3178 12 p.

      Research output: Contribution to journalJournal articlepeer-review

    23. Published

      The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry

      Byrne, S. L., Erthmann, P. Ø., Agerbirk, Niels, Bak, Søren, Hauser, T. P., Nagy, I., Paina, C. & Asp, T., 2017, In: Scientific Reports. 7, 14 p., 40728.

      Research output: Contribution to journalJournal articlepeer-review

    24. 2016
    25. Published

      Aromatic glucosinolate biosynthesis pathway in Barbarea vulgaris and its response to Plutella xylostella infestation

      Liu, T., Zhang, X., Yang, H., Agerbirk, Niels, Qiu, Y., Wang, H., Shen, D., Song, J. & Li, X., 2016, In: Frontiers in Plant Science. 7, 15 p., 83.

      Research output: Contribution to journalJournal articlepeer-review

    26. Published

      Ecotypic differentiation of two sympatric chemotypes of Barbarea vulgaris (Brassicaceae) with different biotic resistances

      Heimes, C., Agerbirk, Niels, Sørensen, Helle, van Mölken, T. & Hauser, T. P., 2016, In: Plant Ecology. 217, 9, p. 1055-1068 14 p.

      Research output: Contribution to journalJournal articlepeer-review

    27. Published

      Glucosinolate diversity within a phylogenetic framework of the tribe Cardamineae (Brassicaceae) unraveled with HPLC-MS/MS and NMR-based analytical distinction of 70 desulfoglucosinolates

      Olsen, C. E., Huang, X., Hansen, Cecilie Ida Cetti, Cipollini, D., Ørgaard, Marian, Matthes, A., Geu-Flores, Fernando, Koch, M. A. & Agerbirk, Niels, 2016, In: Phytochemistry. 132, p. 33-56 24 p.

      Research output: Contribution to journalJournal articlepeer-review

    28. Published

      Methyl transfer in glucosinolate biosynthesis mediated by indole glucosinolate O-Methyltransferase 5

      Pfalz, M., Mukhaimar, M., Perreau, F., Kirk, J., Hansen, Cecilie Ida Cetti, Olsen, C. E., Agerbirk, Niels & Kroymann, J., 2016, In: Plant Physiology. 172, 4, p. 2190-2203 14 p.

      Research output: Contribution to journalJournal articlepeer-review

    29. 2015
    30. Published

      A recycling pathway for cyanogenic glycosides evidenced by the comparative metabolic profiling in three cyanogenic plant species

      Picmanova, M., Neilson, Elizabeth Heather Jakobsen, Motawie, Mohammed Saddik, Olsen, C. E., Agerbirk, Niels, Gray, C. J., Flitsch, S., Meier, S., Silvestro, D., Jørgensen, Kirsten, Sánchez Pérez, R., Møller, Birger Lindberg & Bjarnholt, Nanna, 2015, In: Biochemical Journal. 469, 3, p. 375-389 15 p.

      Research output: Contribution to journalJournal articlepeer-review

    31. Published

      Derivatization of isothiocyanates and their reactive adducts for chromatographic analysis

      Agerbirk, Niels, De Nicola, G. R., Olsen, C. E., Mueller, C. & Iori, R., 2015, In: Phytochemistry. 118, p. 109-115 7 p.

      Research output: Contribution to journalJournal articlepeer-review

    32. Published
    33. Published

      Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative trnscriptome analysis

      Zhang, X., Liu, T., Wei, X., Qiu, Y., Song, J., Wang, H., Shen, D., Agerbirk, Niels & Li, X., 2015, In: B M C Genomics. 16, 16 p., 486.

      Research output: Contribution to journalJournal articlepeer-review

    34. Published

      Glucosinolate hydrolysis products in the crucifer Barbarea vulgaris include a thiazolidine-2-one from a specific phenolic isomer as well as oxazolidine-2-thiones

      Agerbirk, Niels & Olsen, C. E., 2015, In: Phytochemistry. 115, p. 143-151 9 p.

      Research output: Contribution to journalJournal articlepeer-review

    35. Published

      Multiple hydroxyphenethyl glucosinolate isomers and their tandem mass spectrometric destinction in a geographically structured polymorphism in the crucifer Barbarea vulgaris

      Agerbirk, Niels, Olsen, C. E., Heimes, C., Christensen, S., Bak, Søren & Hauser, T. P., 2015, In: Phytochemistry. 115, p. 130-142 13 p.

      Research output: Contribution to journalJournal articlepeer-review

    36. Published

      Taste detection of the non-volatile isothiocyanate moringin results in deterrence to glucosinolate-adapted insect larvae

      Müller, C., van Loon, J., Ruschioni, S., De Nicola, G. R., Olsen, C. E., Iori, R. & Agerbirk, Niels, 2015, In: Phytochemistry. 118, p. 139-148 10 p.

      Research output: Contribution to journalJournal articlepeer-review

    37. 2014
    38. Published

      Acylated glucosinolates with diverse acyl groups investigated by high resolution mass spectrometry and infrared multiphoton dissociation

      Bianco, G., Agerbirk, Niels, Losito, I. & Cataldi, T. R. I., 2014, In: Phytochemistry. 100, p. 92-102 11 p.

      Research output: Contribution to journalJournal articlepeer-review

    39. Published

      Different geographical distributions of two chemotypes of Barbera vulgaris that differ in resistance to insects and a pathogen

      Christensen, S., Heimes, C., Agerbirk, Niels, Poulsen, V. K., Olsen, C. E. & Hauser, T. P., 2014, In: Journal of Chemical Ecology. 40, 5, p. 491-501 11 p.

      Research output: Contribution to journalJournal articlepeer-review

    40. Published

      Glucosinolate-related glucosides in Alliaria petiolata: sources of variation in the plant and different metabolism in an adapted specialist herbivore, Pieris rapae

      Frisch, T., Agerbirk, Niels, Davis, S., Cipollini, D., Olsen, C. E., Motawie, Mohammed Saddik, Bjarnholt, Nanna & Møller, Birger Lindberg, 2014, In: Journal of Chemical Ecology. 40, 10, p. 1063-1079 17 p.

      Research output: Contribution to journalJournal articlepeer-review

    41. Published

      Specific glucosinolate analysis reveals variable levels of epimeric glucobarbarins, dietary precursors of 5-phenyloxazolidine-2-thiones, in watercress types with contrasting chromosime numbers

      Agerbirk, Niels, Olsen, C. E., Cipollini, D., Ørgaard, Marian, Linde-Laursen, I. & Chew, F. S., 2014, In: Journal of Agricultural and Food Chemistry. 62, 39, p. 9586-9596 11 p.

      Research output: Contribution to journalJournal articlepeer-review

    42. Published

      Øvelsesvejledning Biokemi 1

      Agerbirk, Niels & Bjergegaard, C., 2014, 10 ed. Institut for Fødevarevidenskab, Det Natur- og Biovidenskabelige Fakultet, Københavns Universitet.

      Research output: Book/ReportCompendium/lecture notes

    43. 2012
    44. Published

      Glucosinolate structures in evolution

      Agerbirk, Niels & Olsen, C. E., 2012, In: Phytochemistry. 77, p. 16-45 30 p.

      Research output: Contribution to journalReviewpeer-review

    45. Published

      Transient abiotic stresses lead to latent defense and reproductive responses over the Brassica rapa life cycle

      Steinbrenner, A. D., Agerbirk, Niels, Orians, C. M. & Chew, F. S., 2012, In: Chemoecology. 22, 4, p. 239-250 12 p.

      Research output: Contribution to journalJournal articlepeer-review

    46. 2011
    47. Published

      Isoferuloyl derivatives of five seed glucosinolates in the crucifer genus Barbarea

      Agerbirk, Niels & Olsen, C. E., 2011, In: Phytochemistry. 72, p. 610-623 14 p.

      Research output: Contribution to journalJournal articlepeer-review

    48. Published

      Polymorphism for novel tetraglycosylated flavonols in an eco-model crucifer, Barbarea vulgaris

      Dalby-Brown, L., Olsen, C. E., Nielsen, J. K. & Agerbirk, Niels, 2011, In: Journal of Agricultural and Food Chemistry. 59, 13, p. 6947-6956 10 p.

      Research output: Contribution to journalJournal articlepeer-review

    49. Published

      Øvelsesvejledning: Biokemi 1

      Agerbirk, Niels & Bjergegaard, C., 2011, 7. ed. Institut for Grundvidenskab og Miljø, Københavns Universitet. 130 p.

      Research output: Book/ReportCompendium/lecture notes

    50. 2010
    51. Published

      Complex metabolism of aromatic glucosinolates in Pieris rapae caterpillars involving nitrile formation, hydroxylation, demethylation, sulfation, and host plant dependent carboxylic acid formation

      Agerbirk, Niels, Olsen, C. E., Poulsen, E., Jacobsen, Niels & Hansen, Paul Robert, 2010, In: Insect Biochemistry and Molecular Biology. 40, 2, p. 126-137 12 p.

      Research output: Contribution to journalJournal articlepeer-review

    52. Published

      Leaf and floral parts feeding by orange tip butterfly larvae depends on larval position but not on glucosinolate profile or nitrogen level

      Agerbirk, Niels, Chew, F. S., Olsen, C. E. & Jørgensen, Kirsten, 2010, In: Journal of Chemical Ecology. 36, 12, p. 1335-1345 11 p.

      Research output: Contribution to journalJournal articlepeer-review

    53. Published

      Variable glucosinolate profiles of Cardamine pratensis (Brassicaceae) with equal chromosome numbers

      Agerbirk, Niels, Olsen, C. E., Chew, F. S. & Ørgaard, Marian, 2010, In: Journal of Agricultural and Food Chemistry. 58, 8, p. 4693-4700 8 p.

      Research output: Contribution to journalJournal articlepeer-review

    54. Published

      Øvelsesvejledning: Biokemi 1

      Bjergegaard, C. & Agerbirk, Niels, 2010, 6. ed. Institut for Grundvidenskab og Miljø, Københavns Universitet. 125 p.

      Research output: Book/ReportCompendium/lecture notes

    55. 2009
    56. Published

      Indole glucosinolate breakdown and its biological effects

      Agerbirk, Niels, De Vos, M., Kim, J. H. & Jander, G., 2009, In: Phytochemistry Reviews. 8, 1, p. 101-120 20 p.

      Research output: Contribution to journalJournal articlepeer-review

    57. Published

      Øvelsesvejledning: Biokemi 1

      Bjergegaard, C. & Agerbirk, Niels, 2009, 5. ed. Institut for Grundvidenskab og Miljø, Københavns Universitet.

      Research output: Book/ReportCompendium/lecture notes

    58. 2008
    59. Published

      Sinapis phylogeny and evolution of glucosinolates and specific nitrile degrading enzymes

      Agerbirk, Niels, Warwick, S. I., Hansen, Paul Robert & Olsen, C. E., 2008, In: Phytochemistry. 69, 17, p. 2937-2949 13 p.

      Research output: Contribution to journalJournal articlepeer-review

    60. Published

      Aurora-larvens korte liv fulgt i en vindueskarm: nogle iagttagelser af larvens adfærd og udvikling

      Agerbirk, Niels & Jørgensen, Kirsten, 2008, In: Lepidoptera. 9, 6, p. 176-180 5 p.

      Research output: Contribution to journalJournal article

    61. Published

      Evolution of glucosinolates in Sinapis & Brassica

      Agerbirk, Niels, Warwick, S. I. & Olsen, C. E., 2008.

      Research output: Contribution to conferencePosterResearch

    62. Published

      Exercises in enzymology and experimental biochemistry: accuracy and precision in enzymology, activity coefficients in enzymology, macromolecule-ligand dissociation constants

      Agerbirk, Niels, 2008, Department of Natural Sciences, University of Copenhagen. 34 p.

      Research output: Book/ReportCompendium/lecture notes

    63. Published

      Øvelsesvejledning: Biokemi 1

      Bjergegaard, C. & Agerbirk, Niels, 2008, 4 ed. Institut for Grundvidenskab og Miljø, Københavns Universitet.

      Research output: Book/ReportCompendium/lecture notes

    64. 2007
    65. Published

      Biokemiske laboratorieprojekter til studieretningsprojekter for gymnasieelever

      Olsen, S. & Agerbirk, Niels, 2007, Frederiksberg: Institut for Grundvidenskab, Det Biovidenskabelige Fakultet. 38 p.

      Research output: Book/ReportCompendium/lecture notes

    66. Published

      Flower vs. leaf feeding by Pieris brassicae: glucosinolate-rich flower tissues are preferred and sustain higher growth rate

      Smallegange, R. C., Loon, J. J. A. V., Blatt, S. E., Harvey, J. A., Agerbirk, Niels & Dicke, M., 2007, In: Journal of Chemical Ecology. 33, 10, p. 1831-1844 14 p.

      Research output: Contribution to journalJournal articlepeer-review

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