Mette Haubjerg Nicolaisen

Mette Haubjerg Nicolaisen

Associate Professor


  1. 2023
  2. Published

    Activity of root-knot nematodes associated with composition of a nematode-attached microbiome and the surrounding soil microbiota

    Topalovic, Olivera, Bak, Frederik, Santos, S., Sikder, M. M., Sapkota, R., Ekelund, Flemming, Nicolaisen, Mette Haubjerg & Vestergård, M., 2023, In: FEMS Microbiology Ecology. 99, 9, 11 p., fiad091.

    Research output: Contribution to journalJournal articlepeer-review

  3. Published

    Complete Genome Sequence of Sphingopyxis sp. Strain PET50, a Potential Polyethylene Terephthalate (PET)-Degrading Bacterium Isolated from Compost

    Lago-Maciel, A., Nielsen, Tue Kjærgaard, Jensen, K., Nicolaisen, Mette Haubjerg & Hennessy, Rosanna Catherine, 2023, In: Microbiology Resource Announcements. 12, 1, 2 p., e0097022.

    Research output: Contribution to journalJournal article

  4. Published

    Differential impacts of sewage sludge and biochar on phosphorus-related processes: An imaging study of the rhizosphere

    Bornø, Marie Louise, Zervas, A., Bak, Frederik, Merl, T., Koren, K., Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Müller-Stöver, Dorette Sophie, 2023, In: Science of the Total Environment. 905, 13 p., 166888.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    Draft Genome Sequences of Phytase Active Endophytic and Epiphytic Erwinia gerundensis Isolated from Wheat (Triticum aestivum) Seeds

    Sølve, Jonathan, Nielsen, Tue Kjærgaard, Nicolaisen, Mette Haubjerg & Bak, Frederik, 2023, In: Microbiology Resource Announcements. 12, 1, 3 p., e0107322.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published

    Four novel Curtobacterium phages isolated from environmental samples

    Alanin, K. W. S., Olsen, Nikoline S., Djurhuus, Amaru Miranda, Carstens, Alexander Byth, Nielsen, Tue Kjærgaard, Rothgardt, M. M., Russel, A. M., Wagner, N., Lametsch, Rene, Bak, Frederik, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg & Kot, Witold, 2023, In: Archives of Virology. 168, 3

    Research output: Contribution to journalJournal articlepeer-review

  7. Published
  8. Published
  9. 2022
  10. Published
  11. Published

    Cellulose amendment promotes P solubilization by Penicillium aculeatum in non-sterilized soil

    Gómez Muñoz, Beatriz, Efthymiou, A., Dubey, M., Sølve, Jonathan, Nicolaisen, Mette Haubjerg, Jensen, Dan Funck, Nybroe, O. & Larsen, J., 2022, In: Fungal Biology. 126, 5, p. 356-365 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published

    Deep-rooted perennial crops differ in capacity to stabilize C inputs in deep soil layers

    Peixoto, L., Olesen, J. E., Elsgaard, L., Lønne Enggrob, K., C. Banfield, C., Dippold, M. A., Nicolaisen, Mette Haubjerg, Bak, Frederik, Zang, H., Dresbøll, Dorte Bodin, Thorup-Kristensen, Kristian & Rasmussen, J., 2022, In: Scientific Reports. 12, 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  13. Published

    Deep-rooted plant species recruit distinct bacterial communities in subsoil than in topsoil

    Bak, Frederik, Lyhne-Kjærbye, A., Tardif, S., Dresbøll, Dorte Bodin, Nybroe, O. & Nicolaisen, Mette Haubjerg, 2022, In: Phytobiomes Journal. 6, 3, p. 236-246 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  14. Published

    Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties

    Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Bak, Frederik, Guan, Ying, Herms, Courtney Horn, Molina Zamudio, Kitzia Yashvelt, Thybo Ganzhorn, D., Müller-Stöver, Dorette Sophie, Ahmad, J., Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology resource announcements. 11, 5, 3 p., e0022222.

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage

    Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, Rosanna Catherine, Carbone, I., Cornish, V., Müller-Stöver, Dorette Sophie, Grunden, A., Jacobsen, C. S. & Nicolaisen, Mette Haubjerg, 2022, In: Microbiology Resource Announcements. 11, 11, 4 p., e0066322.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    Succession of the wheat seed-associated microbiome as affected by soil fertility level and introduction of Penicillium and Bacillus inoculants in the field

    Nunes, I., Hansen, Veronika, Bak, Frederik, Bonnichsen, L., Su, J., Hao, X., Raymond, Nelly Sophie, Nicolaisen, Mette Haubjerg, Jensen, Lars Stoumann & Nybroe, O., 2022, In: FEMS Microbiology Ecology. 98, 3, 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    The cytokinin-producing plant beneficial bacterium Pseudomonas fluorescens G20-18 primes tomato (Solanum lycopersicum) for enhanced drought stress responses

    Mekureyaw, M. F., Pandey, Chandana, Hennessy, Rosanna Catherine, Nicolaisen, Mette Haubjerg, Liu, Fulai, Nybroe, O. & Roitsch, Thomas Georg, 2022, In: Journal of Plant Physiology. 270, 15 p., 153629.

    Research output: Contribution to journalJournal articlepeer-review

  18. 2021
  19. Published

    A novel microcosm to identify inherently competitive microorganisms with the ability to mineralize phytate in solum

    Pittroff, S. M., Olsson, S., Doolette, A., Greiner, R., Richardson, A. E. & Nicolaisen, Mette Haubjerg, 2021, In: Soil Ecology Letters. 3, p. 367-382

    Research output: Contribution to journalJournal articlepeer-review

  20. Published
  21. Published

    Complete Genome Sequence of a Novel Dyadobacter sp. Strain, NIV53, Isolated from 2-Meter Deep Subsurface Sediment

    Bak, Frederik, Henriksen, Alexander Pil, Nielsen, Tue Kjærgaard & Nicolaisen, Mette Haubjerg, 2021, In: Microbiology resource announcements. 10, 44, 2 p., e0075421.

    Research output: Contribution to journalJournal articlepeer-review

  22. Published

    Complete Genome Sequence of the Cytokinin-Producing Biocontrol Strain Pseudomonas fluorescens G20-18

    Nielsen, Tue Kjærgaard, Mekureyaw, M. F., Hansen, Lars Hestbjerg, Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg & Hennessy, Rosanna Catherine, 2021, In: Microbiology Resource Announcements. 10, 30, 2 p.

    Research output: Contribution to journalJournal articlepeer-review

  23. Published

    Root distribution in intercropping systems–a comparison of DNA based methods and visual distinction of roots

    Hassan, A., Dresbøll, Dorte Bodin, Rasmussen, Camilla Ruø, Lyhne-Kjærbye, A., Nicolaisen, Mette Haubjerg, Stokholm, M. S., Lund, O. S. & Thorup-Kristensen, Kristian, 2021, In: Archives of Agronomy and Soil Science. 67, 1, p. 15-28

    Research output: Contribution to journalJournal articlepeer-review

  24. 2020
  25. Published

    Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil

    Zhang, Y., Hao, X., Garcia-Lemos, A. M., Nunes, I., Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Applied and Environmental Microbiology. 86, 10, 16 p., ARTN e02969-19.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Digging Deeper for Agricultural Resources, the Value of Deep Rooting

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E., Crews, T. E., Hinsinger, P., Kirkegaard, J., Pierret, A. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 406-417

    Research output: Contribution to journalReviewpeer-review

  27. Published

    Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities

    Cavalieri, Andrea, Bak, Frederik, Garcia-Lemos, A. M., Weiner, Jacob, Nicolaisen, Mette Haubjerg & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 14 p., 1045.

    Research output: Contribution to journalJournal articlepeer-review

  28. Published

    Exposing Deep Roots: A Rhizobox Laboratory

    Thorup-Kristensen, Kristian, Halberg, N., Nicolaisen, Mette Haubjerg, Olesen, J. E. & Dresbøll, Dorte Bodin, 2020, In: Trends in Plant Science. 25, 4, p. 418-419

    Research output: Contribution to journalJournal article

  29. Published

    Identification of Root-Associated Bacteria That Influence Plant Physiology, Increase Seed Germination, or Promote Growth of the Christmas Tree Species Abies nordmanniana

    Garcia-Lemos, A. M., Grosskinsky, D. K., Akhtar, S. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Nybroe, O. & Veierskov, Bjarke, 2020, In: Frontiers in Microbiology. 11, 15 p., 566613.

    Research output: Contribution to journalJournal articlepeer-review

  30. Published

    Seed inoculation with Penicillium bilaiae and Bacillus simplex affects the nutrient status of winter wheat

    Hansen, Veronika, Bonnichsen, L., Nunes, I., Sexlinger, K., Lopez, S. R., van der Bom, Frederik, Nybroe, O., Nicolaisen, Mette Haubjerg & Jensen, Lars Stoumann, 2020, In: Biology and Fertility of Soils. 56, 1, p. 97-109

    Research output: Contribution to journalJournal articlepeer-review

  31. Published

    The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin

    Hao, X., Zhu, Y., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2020, In: Frontiers in Microbiology. 10, 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  32. Published

    The environmental occurrence of Pseudomonas aeruginosa

    Crone, S., Vives-Flórez, M., Kvich, Lasse Andersson, Saunders, A. M., Malone, M., Nicolaisen, Mette Haubjerg, Martínez-García, E., Rojas-Acosta, C., Catalina Gomez-Puerto, M., Calum, Henrik Pierre, Whiteley, M., Kolter, R. & Bjarnsholt, Thomas, 2020, In: APMIS. 128, 3, p. 220-231

    Research output: Contribution to journalJournal articlepeer-review

  33. Published

    Under the Christmas Tree: Belowground Bacterial Associations With Abies nordmanniana Across Production Systems and Plant Development

    Garcia-Lemos, A. M., Gobbi, Alex, Nicolaisen, Mette Haubjerg, Hansen, Lars Hestbjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., 2020, In: Frontiers in Microbiology. 11, 17 p., 198.

    Research output: Contribution to journalJournal articlepeer-review

  34. 2019
  35. Published

    Root-Associated Microbial Communities of Abies nordmanniana: Insights Into Interactions of Microbial Communities With Antioxidative Enzymes and Plant Growth

    Garcia-Lemos, A. M., Großkinsky, D. K., Stokholm, M. S., Lund, O. S., Nicolaisen, Mette Haubjerg, Roitsch, Thomas Georg, Veierskov, Bjarke & Nybroe, O., Aug 2019, In: Frontiers in Microbiology. 10, p. 1-16 1937.

    Research output: Contribution to journalJournal articlepeer-review

  36. Published

    Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile

    Bak, Frederik, Nybroe, O., Zheng, B., Badawi, N., Hao, X., Nicolaisen, Mette Haubjerg & Aamand, J., 1 Mar 2019, In: FEMS Microbiology Ecology. 95, 3, p. 1-12 fiz008.

    Research output: Contribution to journalJournal articlepeer-review

  37. Published
  38. 2018
  39. Published

    Carbon mineralization and microbial activity in agricultural topsoil and subsoil as regulated by root nitrogen and recalcitrant carbon concentrations

    Liang, Z., Elsgaard, L., Nicolaisen, Mette Haubjerg, Lyhne-Kjærbye, A. & Olesen, J. E., 1 Dec 2018, In: Plant and Soil. 433, 1-2, p. 65-82

    Research output: Contribution to journalJournal articlepeer-review

  40. Published

    Biological control of rice sheath blight using hyphae-associated bacteria: development of an in planta screening assay to predict biological control agent performance under field conditions

    Nicolaisen, Mette Haubjerg, Nguyen Duc Cuong, Herschend, J., Jensen, Birgit, Le Cam Loan, Pham Van Du, Sørensen, Jan, Sørensen, Helle & Olsson, S., 2018, In: BioControl. 63, 6, p. 843-853

    Research output: Contribution to journalJournal articlepeer-review

  41. Published

    The biofilm matrix polysaccharides cellulose and alginate both protect Pseudomonas putida mt-2 against reactive oxygen species generated under matric stress and copper exposure

    Svenningsen, N. B., Martinez-Garcia, E., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2018, In: Microbiology. 164, 6, p. 883-888 6 p.

    Research output: Contribution to journalJournal articlepeer-review

  42. 2017
  43. Published

    A novel baiting microcosm approach used to identify the bacterial community associated with Penicillium bilaii hyphae in soil

    Ghodsalavi, B., Svenningsen, N. B., Hao, X., Olsson, S., Nicolaisen, Mette Haubjerg, Al-Soud, W. A., Sørensen, Søren Johannes & Nybroe, O., 27 Oct 2017, In: PLOS ONE. 12, 10, 14 p., e0187116.

    Research output: Contribution to journalJournal articlepeer-review

  44. Published

    Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid

    Svenningsen, N. B., Damgaard, M., Rasmussen, M. K., Pérez-Pantoja, D., Nybroe, O. & Nicolaisen, Mette Haubjerg, 2017, In: B M C Microbiology. 17, 1, 10 p., 211.

    Research output: Contribution to journalJournal articlepeer-review

  45. Published

    Penicillium bilaii effects on maize growth and P uptake from soil and localized sewage sludge in a rhizobox experiment

    Gómez Muñoz, Beatriz, Pittroff, S. M., de Neergaard, A., Jensen, Lars Stoumann, Nicolaisen, Mette Haubjerg & Magid, Jakob, 2017, In: Biology and Fertility of Soils. 53, 1, p. 23-35 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  46. 2016
  47. Published

    Nitrogen regulation of the xyl genes of Pseudomonas putida mt-2 propagates into a significant effect of nitrate on m-xylene mineralization in soil

    Svenningsen, N. B., Nicolaisen, Mette Haubjerg, Hansen, Hans Chr. Bruun, de Lorenzo, V. & Nybroe, O., 2016, In: Microbial Biotechnology. 9, 6, p. 814-823 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  48. 2015
  49. Published

    Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response

    Svenningsen, N. B., Pérez-Pantoja, D., Nikel, P. I., Nicolaisen, Mette Haubjerg, de Lorenzo, V. & Nybroe, O., 2015, In: BMC Microbiology. 15, 11 p., 202.

    Research output: Contribution to journalJournal articlepeer-review

  50. Published

    The biosurfactant viscosin transiently stimulates n-hexadecane mineralization by a bacterial consortium

    Bak, Frederik, Bonnichsen, L., Jørgensen, Niels O. G., Nicolaisen, Mette Haubjerg & Nybroe, O., 2015, In: Applied Microbiology and Biotechnology. 99, 3, p. 1475-1483 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  51. 2013
  52. Published

    Improving Griffith's protocol for co-extraction of microbial DNA and RNA in adsorptive soils

    Paulin, M. M., Nicolaisen, Mette Haubjerg, Jacobsen, C. S., Gimsing, A. L., Sørensen, Jan & Bælum, J., 2013, In: Soil Biology & Biochemistry. 63, p. 37-49 13 p.

    Research output: Contribution to journalJournal articlepeer-review

  53. 2012
  54. Published

    Proteinase production in Pseudomonas fluorescens ON2 is affected by carbon sources and allows surface-attached but not planktonic cells to utilize protein for growth in lake water

    Nicolaisen, Mette Haubjerg, Worm, J., Jørgensen, Niels O. G., Middelboe, Mathias & Nybroe, O., 2012, In: F E M S Microbiology Ecology. 80, 1, p. 168-178 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  55. 2011
  56. Published

    (R,S)-dichlorprop herbicide in agricultural soil induces proliferation and expression of multiple dioxygenase-encoding genes in the indigenous microbial community

    Paulin, M. M., Nicolaisen, Mette Haubjerg & Sørensen, Jan, 2011, In: Environmental Microbiology. 13, 6, p. 1513-1523 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  57. Published

    Hyphae-colonizing Burkholderia sp. - a new source of biological control agents against sheath blight disease (Rhizoctonia solani AG1-IA) in rice

    Nguyen, D. C., Nicolaisen, Mette Haubjerg, Sørensen, Jan & Olsson, S., 2011, In: Microbial Ecology. 62, 2, p. 425-434 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  58. 2010
  59. Published

    Abundance and expression of enantioselective rdpA and sdpA dioxygenase genes during degradation of the racemic herbicide (R,S)-2-(2,4-dichlorophenoxy)propionate in soil

    Paulin, M. M., Nicolaisen, Mette Haubjerg & Sørensen, Jan, 2010, In: Applied and Environmental Microbiology. 76, 9, p. 2873-2883 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  60. 2009
  61. Published

    Direct transcript analysis by quantitative real-time PCR to study phenoxyalcanoic acid degrader gene expression in agricultural soil and rhizosphere

    Nicolaisen, Mette Haubjerg, Bælum, J., Paulin, M. M., Jacobsen, C. S. & Sørensen, Jan, 2009, Conference abstracts. p. 1

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearch

  62. Published

    Molecular tools in rhizosphere microbiology - from single-cell to whole-community analysis

    Sørensen, Jan, Nicolaisen, Mette Haubjerg, Ron, E. & Simonet, P., 2009, In: Plant and Soil. 321, 1-2, p. 483-512 30 p.

    Research output: Contribution to journalReviewpeer-review

  63. 2008
  64. Published

    Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil

    Bælum, J., Nicolaisen, Mette Haubjerg, Holben, W. E., Strobel, Bjarne W., Sørensen, Jan & Jacobsen, C. S., 2008, In: ISME Journal. 2, 6, p. 677-687 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  65. Published

    Transcription dynamics of the functional tfdA gene during MCPA herbicide degradation by Cupriavidus necator AEO106 (pRO101) in agricultural soil

    Nicolaisen, Mette Haubjerg, Bælum, J., Jacobsen, C. S. & Sørensen, Jan, 2008, In: Environmental Microbiology. 10, 3, p. 571-579 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  66. 2007
  67. Published

    Methods to detect and quantify bacteria in soil: chapter 11

    Nybroe, O., Brandt, Kristian Koefoed, Nicolaisen, Mette Haubjerg & Sørensen, Jan, 2007, Modern soil microbiology. p. 283-316 34 p.

    Research output: Chapter in Book/Report/Conference proceedingBook chapterResearch

  68. Published
  69. Published

    Transcriptional analysis of the functional tfdA gene in Ralstonia eutropha AEO106(pRO101) during MCPA herbicide degradation in natural soil and rhizosphere

    Nicolaisen, Mette Haubjerg, Bælum, J., Jacobsen, C. S. & Sørensen, Jan, 2007, Book of Abstracts. 1 p.

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearch

  70. 2006
  71. Published
  72. 2005
  73. Published

    Abundance of actinobacteria and production of geosmin and 2-methylisoborneol in Danish streams and fish ponds

    Klausen, C., Nicolaisen, Mette Haubjerg, Strobel, Bjarne W., Warnecke, F., Nielsen, J. L. & Jørgensen, Niels O. G., 2005, In: FEMS Microbiology Ecology. 52, 2, p. 265-278 14 p.

    Research output: Contribution to journalJournal articlepeer-review

  74. Influence of starvation on potential ammonia-oxidizing activity and amoA mRNA levels of Nitrosospira briensis

    Bollmann, A., Schmidt, I., Saunders, A. M. & Nicolaisen, Mette Haubjerg, 2005, In: Applied and Environmental Microbiology. 71, 3, p. 1276-1282 7 p.

    Research output: Contribution to journalJournal articlepeer-review

  75. 2004
  76. Competition between ammonia-oxidizing bacteria and benthic microalgae

    Risgaard-Petersen, N., Nicolaisen, Mette Haubjerg, Revsbech, N. P. & Lomstein, B. A., 2004, In: Applied and Environmental Microbiology. 70, 9, p. 5528-5537 10 p.

    Research output: Contribution to journalJournal articlepeer-review

  77. Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in a high yield irrigated Philippine rice field

    Nicolaisen, Mette Haubjerg, Risgaard-Petersen, N., Revsbech, N. P., Reichardt, W. & Ramsing, N. B., 2004, In: F E M S Microbiology Reviews. 49, 3, p. 359-369 11 p.

    Research output: Contribution to journalJournal articlepeer-review

  78. 2002
  79. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria

    Nicolaisen, Mette Haubjerg & Ramsing, N., 2002, In: Journal of Microbiological Methods. 50, 2, p. 189-203 15 p.

    Research output: Contribution to journalJournal articlepeer-review

ID: 6084239